Rhodocaloribacter litoris strain ISCAR-4553 chromosome.
Bacteria; Rhodothermota; Rhodothermia; Rhodothermales; Rhodothermaceae; Rhodocaloribacter.
Rhodocaloribacter litoris gen. nov., sp. nov., isolated from an intertidal hot spring
Int J Syst Evol Microbiol (2021) In press
Submitted (15-JUN-2021) Biotechnology, Matis ltd., Vinlandsleid 12, Reykjavik 113, Iceland
Submitted (27-JAN-2020) Biotechnology, Matis ltd., Vinlandsleid 12, Reykjavik 113, Iceland
REFSEQ INFORMATION: The reference sequence is identical to\nCP076718.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nBacteria and source DNA available from ATCC, DSMZ, snaedis@hi.is.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 08-JUL-2020\nAssembly Method :: SPAdes v. 3.14.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 80.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/16/2023 14:17:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,728\nCDSs (total) :: 3,678\nGenes (coding) :: 3,646\nCDSs (with protein) :: 3,646\nGenes (RNA) :: 50\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 3\nPseudo Genes (total) :: 32\nCDSs (without protein) :: 32\nPseudo Genes (ambiguous residues) :: 6 of 32\nPseudo Genes (frameshifted) :: 6 of 32\nPseudo Genes (incomplete) :: 20 of 32\nPseudo Genes (internal stop) :: 2 of 32\nPseudo Genes (multiple problems) :: 2 of 32\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##
type strain of Rhodocaloribacter litoris
COORDINATES: protein motif:HMM:NF002557.0
GO:0004342 - glucosamine-6-phosphate deaminase activity [Evidence IEA]
GO:0006046 - N-acetylglucosamine catabolic process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF016114.2
GO:0030246 - carbohydrate binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012801.2
GO:0015267 - channel activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF028442.2
COORDINATES: protein motif:HMM:NF013429.2
GO:0016853 - isomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013126.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
glycoside hydrolase family 3 N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF036578.2
COORDINATES: protein motif:HMM:NF012589.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0019200 - carbohydrate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006189.0
GO:0016491 - oxidoreductase activity [Evidence IEA]
bifunctional rhamnulose-1-phosphate aldolase/short-chain dehydrogenase
COORDINATES: protein motif:HMM:NF014774.2
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014628.2
COORDINATES: protein motif:HMM:NF018234.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
prolyl oligopeptidase family serine peptidase
COORDINATES: protein motif:HMM:NF005313.0
COORDINATES: protein motif:HMM:NF013706.2
fumarylacetoacetate hydrolase family protein
COORDINATES: protein motif:HMM:NF006091.0
GO:0018659 - 4-hydroxybenzoate 3-monooxygenase activity [Evidence IEA]
GO:0018874 - benzoate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02427.1
GO:0047570 - 3-oxoadipate enol-lactonase activity [Evidence IEA]
GO:0042952 - beta-ketoadipate pathway [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02425.1
GO:0047575 - 4-carboxymuconolactone decarboxylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02422.1
GO:0018578 - protocatechuate 3,4-dioxygenase activity [Evidence IEA]
GO:0046278 - 3,4-dihydroxybenzoate metabolic process [Evidence IEA]
protocatechuate 3,4-dioxygenase subunit beta
COORDINATES: protein motif:HMM:TIGR02423.1
protocatechuate 3,4-dioxygenase subunit alpha
COORDINATES: protein motif:HMM:TIGR02426.1
GO:0047472 - 3-carboxy-cis,cis-muconate cycloisomerase activity [Evidence IEA]
3-carboxy-cis,cis-muconate cycloisomerase
COORDINATES: protein motif:HMM:TIGR01930.1
GO:0016746 - acyltransferase activity [Evidence IEA]
GO:0006635 - fatty acid beta-oxidation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02429.1
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF040396.1
COORDINATES: protein motif:HMM:NF017050.2
GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:NF024242.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF016115.2
GO:0016812 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013098.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00813.1
COORDINATES: protein motif:HMM:TIGR00341.1
COORDINATES: protein motif:HMM:NF003027.0
GO:0008927 - mannonate dehydratase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03709.1
COORDINATES: protein motif:HMM:NF026255.2
COORDINATES: protein motif:HMM:NF013247.2
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00553.1
GO:0046820 - 4-amino-4-deoxychorismate synthase activity [Evidence IEA]
GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO:0008153 - para-aminobenzoic acid biosynthetic process [Evidence IEA]
aminodeoxychorismate synthase component I
COORDINATES: protein motif:HMM:TIGR02073.1
GO:0009274 - peptidoglycan-based cell wall [Evidence IEA]
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014893.2
COORDINATES: protein motif:HMM:NF014477.2
GO:0017013 - protein flavinylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF039847.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: protein motif:HMM:NF016176.2
COORDINATES: protein motif:HMM:TIGR01065.1
COORDINATES: protein motif:HMM:NF014026.2
COORDINATES: protein motif:HMM:NF012235.2
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025885.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-54 dependent transcriptional regulator
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: similar to AA sequence:RefSeq:WP_016290705.1
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0019682 - glyceraldehyde-3-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
type I glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_006863552.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004618 - phosphoglycerate kinase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014850.2
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: protein motif:HMM:NF025229.2
FlgD immunoglobulin-like domain containing protein
COORDINATES: protein motif:HMM:NF019592.2
GO:0009279 - cell outer membrane [Evidence IEA]
RagB/SusD family nutrient uptake outer membrane protein
COORDINATES: protein motif:HMM:TIGR04056.1
GO:0071702 - organic substance transport [Evidence IEA]
SusC/RagA family TonB-linked outer membrane protein
COORDINATES: protein motif:HMM:NF012742.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF008277.0
GO:0030246 - carbohydrate binding [Evidence IEA]; GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives [Evidence IEA]
COORDINATES: protein motif:HMM:NF008724.0
GO:0008108 - UDP-glucose:hexose-1-phosphate uridylyltransferase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
UDP-glucose--hexose-1-phosphate uridylyltransferase
COORDINATES: protein motif:HMM:TIGR00131.1
GO:0004335 - galactokinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019365.2
GO:0015926 - glucosidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019335.2
TonB-dependent receptor plug domain-containing protein
COORDINATES: protein motif:HMM:NF018038.2
COORDINATES: protein motif:HMM:NF015585.2
COORDINATES: similar to AA sequence:RefSeq:WP_002321245.1
GO:0047834 - D-threo-aldose 1-dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018877.2
COORDINATES: protein motif:HMM:NF012692.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012961.2
COORDINATES: protein motif:HMM:NF025736.2
COORDINATES: protein motif:HMM:TIGR02012.1
GO:0008094 - ATP-dependent activity, acting on DNA [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00010.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014567.2
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF012301.2
LytTR family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013206.2
COORDINATES: protein motif:HMM:TIGR00544.1
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: protein motif:HMM:TIGR00078.1
GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity [Evidence IEA]
GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]
carboxylating nicotinate-nucleotide diphosphorylase
COORDINATES: protein motif:HMM:NF012780.2
COORDINATES: protein motif:HMM:NF022479.2
COORDINATES: protein motif:HMM:TIGR01330.1
GO:0008441 - 3'(2'),5'-bisphosphate nucleotidase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024976.2
type I restriction enzyme HsdR N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF018805.2
lipocalin-like domain-containing protein
COORDINATES: protein motif:HMM:NF024116.2
COORDINATES: protein motif:HMM:NF013970.2
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:NF015947.2
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012993.2
carbon-nitrogen hydrolase family protein
COORDINATES: protein motif:HMM:NF012792.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF027637.2
COORDINATES: protein motif:HMM:NF014910.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024118.2
COORDINATES: protein motif:HMM:TIGR00875.1
GO:0016832 - aldehyde-lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03991.1
COORDINATES: protein motif:HMM:NF018884.2
GO:0016791 - phosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00040.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001911.0
COORDINATES: protein motif:HMM:TIGR00728.1
GO:0035673 - oligopeptide transmembrane transporter activity [Evidence IEA]
GO:0006857 - oligopeptide transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024777.2
LamG-like jellyroll fold domain-containing protein
COORDINATES: protein motif:HMM:TIGR00225.1
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: protein motif:HMM:NF025426.2
COORDINATES: protein motif:HMM:NF015944.2
COORDINATES: protein motif:HMM:NF016424.2
GO:0005515 - protein binding [Evidence IEA]
fibronectin type III domain-containing protein
COORDINATES: protein motif:HMM:NF012311.2
COORDINATES: protein motif:HMM:NF025910.2
COORDINATES: protein motif:HMM:NF014566.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0071586 - CAAX-box protein processing [Evidence IEA]
CPBP family intramembrane metalloprotease
COORDINATES: protein motif:HMM:NF002826.0
COORDINATES: protein motif:HMM:NF024180.2
COORDINATES: protein motif:HMM:TIGR04183.1
T9SS type A sorting domain-containing protein
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF006757.0
GO:0003994 - aconitate hydratase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: protein motif:HMM:NF017015.2
COORDINATES: protein motif:HMM:NF024909.2
COORDINATES: protein motif:HMM:NF016289.2
COORDINATES: protein motif:HMM:NF018050.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF027067.2
type II toxin-antitoxin system MqsA family antitoxin
COORDINATES: protein motif:HMM:NF021558.2
COORDINATES: protein motif:HMM:TIGR01891.1
COORDINATES: protein motif:HMM:NF013696.2
COORDINATES: protein motif:HMM:TIGR02453.1
COORDINATES: protein motif:HMM:NF001159.1
GO:0042586 - peptide deformylase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF012766.2
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014670.2
COORDINATES: protein motif:HMM:NF012515.2
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF018058.2
COORDINATES: protein motif:HMM:NF014114.2
COORDINATES: protein motif:HMM:TIGR00639.1
GO:0004644 - phosphoribosylglycinamide formyltransferase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
phosphoribosylglycinamide formyltransferase
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: protein motif:HMM:TIGR02734.1
GO:0016166 - phytoene dehydrogenase activity [Evidence IEA]
GO:0016117 - carotenoid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012705.2
COORDINATES: protein motif:HMM:NF014375.2
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: protein motif:HMM:NF017206.2
COORDINATES: protein motif:HMM:NF025092.2
carboxypeptidase-like regulatory domain-containing protein
COORDINATES: protein motif:HMM:NF013786.2
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: protein motif:HMM:NF040439.1
COORDINATES: protein motif:HMM:NF022317.2
COORDINATES: protein motif:HMM:NF020463.2
COORDINATES: similar to AA sequence:RefSeq:WP_012599651.1
GO:0004803 - transposase activity [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: protein motif:HMM:NF013046.2
COORDINATES: protein motif:HMM:NF025086.2
COORDINATES: protein motif:HMM:NF013434.2
COORDINATES: protein motif:HMM:NF006707.0
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012234.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014643.2
GO:0110001 - toxin-antitoxin complex [Evidence IEA]
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008168.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: protein motif:HMM:NF012955.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012321.2
COORDINATES: protein motif:HMM:NF013739.2
COORDINATES: protein motif:HMM:TIGR03462.1
lycopene cyclase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004912347.1
GO:0003934 - GTP cyclohydrolase I activity [Evidence IEA]
GO:0042559 - pteridine-containing compound biosynthetic process [Evidence IEA]; GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014522.2
GO:0031419 - cobalamin binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
Presence of a B(12) (cobalamin)-binding domain implies dependence on cobalamin itself, in one of its several forms, or in some unusual lineages, dependence on a cobalamin-like analog.; Presence of a B(12) (cobalamin)-binding domain implies dependence on cobalamin itself, in one of its several forms, or in some unusual lineages, dependence on a cobalamin-like analog; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033564.0
COORDINATES: protein motif:HMM:NF019265.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF006803.0
GO:0008686 - 3,4-dihydroxy-2-butanone-4-phosphate synthase activity [Evidence IEA]; GO:0003935 - GTP cyclohydrolase II activity [Evidence IEA]
bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II
COORDINATES: protein motif:HMM:NF024803.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013088.2
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024867.2
COORDINATES: protein motif:HMM:NF024109.2
bifunctional alpha/beta hydrolase/OsmC family protein
COORDINATES: protein motif:HMM:NF017551.2
COORDINATES: protein motif:HMM:NF018645.2
COORDINATES: protein motif:HMM:NF012958.2
COORDINATES: protein motif:HMM:NF039709.1
COORDINATES: protein motif:HMM:NF013781.2
GO:0031419 - cobalamin binding [Evidence IEA]; GO:0016866 - intramolecular transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012610.2
COORDINATES: protein motif:HMM:NF019317.2
COORDINATES: protein motif:HMM:NF005932.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF024805.2
COORDINATES: protein motif:HMM:NF012471.2
COORDINATES: protein motif:HMM:NF025042.2
COORDINATES: protein motif:HMM:NF013292.2
COORDINATES: protein motif:HMM:NF017495.2
GO:0007155 - cell adhesion [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02290.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04019.1
bacillithiol system redox-active protein YtxJ
COORDINATES: protein motif:HMM:NF020123.2
COORDINATES: protein motif:HMM:NF016214.2
COORDINATES: protein motif:HMM:NF001813.0
COORDINATES: protein motif:HMM:TIGR00336.1
GO:0004588 - orotate phosphoribosyltransferase activity [Evidence IEA]
GO:0009220 - pyrimidine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00560.1
GO:0008444 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
COORDINATES: protein motif:HMM:NF001413.0
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:NF027651.2
GO:0020037 - heme binding [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: protein motif:HMM:NF008633.0
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF013232.2
MTAP family purine nucleoside phosphorylase
COORDINATES: protein motif:HMM:NF013413.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0070573 - metallodipeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04514.1
COORDINATES: protein motif:HMM:NF024900.2
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: protein motif:HMM:NF027592.2
COORDINATES: protein motif:HMM:TIGR01959.1
GO:0050136 - NADH dehydrogenase (quinone) activity [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoF
COORDINATES: protein motif:HMM:NF017496.2
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01958.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
NAD(P)H-dependent oxidoreductase subunit E
COORDINATES: protein motif:HMM:TIGR01962.1
COORDINATES: protein motif:HMM:NF012549.2
COORDINATES: similar to AA sequence:RefSeq:WP_000236330.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
NADH-quinone oxidoreductase subunit NuoB
COORDINATES: protein motif:HMM:NF012717.2
COORDINATES: similar to AA sequence:RefSeq:WP_016476317.1
GO:0004018 - N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012348.2
GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013224.2
Lrp/AsnC family transcriptional regulator
COORDINATES: protein motif:HMM:NF024907.2
COORDINATES: protein motif:HMM:NF013752.2
COORDINATES: protein motif:HMM:TIGR02436.1
COORDINATES: protein motif:HMM:NF033709.1
COORDINATES: protein motif:HMM:NF013661.2
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00636.1
GO:0008817 - corrinoid adenosyltransferase activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: protein motif:HMM:NF024863.2
COORDINATES: protein motif:HMM:NF040570.1
COORDINATES: protein motif:HMM:NF014594.2
acetyl-CoA hydrolase/transferase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR00797.1
GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00513.1
GO:0009317 - acetyl-CoA carboxylase complex [Evidence IEA]
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
acetyl-CoA carboxylase carboxyltransferase subunit alpha
COORDINATES: protein motif:HMM:NF024675.2
COORDINATES: similar to AA sequence:RefSeq:WP_004153593.1
GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001030595.1
COORDINATES: protein motif:HMM:NF015658.2
COORDINATES: protein motif:HMM:NF012894.2
GO:0042834 - peptidoglycan binding [Evidence IEA]; GO:0015288 - porin activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF033488.1
COORDINATES: protein motif:HMM:NF013740.2
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:1905887 - autoinducer AI-2 transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF019139.2
GO:0006353 - DNA-templated transcription termination [Evidence IEA]
Rho termination factor N-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: protein motif:HMM:NF024589.2
COORDINATES: protein motif:HMM:NF023010.2
COORDINATES: protein motif:HMM:TIGR00530.1
lysophospholipid acyltransferase family protein
COORDINATES: protein motif:HMM:TIGR00326.1
GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]; GO:0008835 - diaminohydroxyphosphoribosylaminopyrimidine deaminase activity [Evidence IEA]
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
ATP-binding cassette domain-containing protein
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00557.1
GO:0050570 - 4-hydroxythreonine-4-phosphate dehydrogenase activity [Evidence IEA]
GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
4-hydroxythreonine-4-phosphate dehydrogenase PdxA
COORDINATES: protein motif:HMM:NF002073.0
GO:0030145 - manganese ion binding [Evidence IEA]; GO:0070006 - metalloaminopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013528.2
GO:0008441 - 3'(2'),5'-bisphosphate nucleotidase activity [Evidence IEA]; GO:0004527 - exonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
bifunctional oligoribonuclease/PAP phosphatase NrnA
COORDINATES: protein motif:HMM:NF022466.2
COORDINATES: protein motif:HMM:NF015925.2
antibiotic biosynthesis monooxygenase family protein
COORDINATES: protein motif:HMM:NF020252.2
COORDINATES: protein motif:HMM:NF002772.0
GO:0008878 - glucose-1-phosphate adenylyltransferase activity [Evidence IEA]
GO:0005978 - glycogen biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016056.2
thiol-disulfide oxidoreductase DCC family protein
COORDINATES: protein motif:HMM:NF019924.2
COORDINATES: protein motif:HMM:NF024816.2
COORDINATES: similar to AA sequence:RefSeq:WP_011001079.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016839.2
septum formation initiator family protein
COORDINATES: protein motif:HMM:NF040057.1
RNA-guided endonuclease TnpB family protein
COORDINATES: protein motif:HMM:NF016836.2
COORDINATES: protein motif:HMM:NF001913.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
ADP-forming succinate--CoA ligase subunit beta
COORDINATES: protein motif:HMM:NF015684.2
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01035.1
GO:0008883 - glutamyl-tRNA reductase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00212.1
GO:0004418 - hydroxymethylbilane synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014641.2
GO:0004852 - uroporphyrinogen-III synthase activity [Evidence IEA]
GO:0006782 - protoporphyrinogen IX biosynthetic process [Evidence IEA]; GO:0006780 - uroporphyrinogen III biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF006762.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004655 - porphobilinogen synthase activity [Evidence IEA]
GO:0033014 - tetrapyrrole biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF018484.2
GO:0020037 - heme binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013381.2
GO:0004853 - uroporphyrinogen decarboxylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00109.1
GO:0004325 - ferrochelatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00562.1
GO:0004729 - oxygen-dependent protoporphyrinogen oxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF000818.0
GO:0042286 - glutamate-1-semialdehyde 2,1-aminomutase activity [Evidence IEA]
glutamate-1-semialdehyde 2,1-aminomutase
COORDINATES: protein motif:HMM:NF023376.2
COORDINATES: protein motif:HMM:NF012512.2
COORDINATES: protein motif:HMM:TIGR00763.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00157.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome small subunit-dependent GTPase A
COORDINATES: protein motif:HMM:TIGR01051.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016291309.1
GO:0050242 - pyruvate, phosphate dikinase activity [Evidence IEA]
GO:0015976 - carbon utilization [Evidence IEA]
COORDINATES: protein motif:HMM:NF012936.2
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012398.2
COORDINATES: protein motif:HMM:NF013228.2
COORDINATES: protein motif:HMM:TIGR03037.1
COORDINATES: protein motif:HMM:NF016777.2
COORDINATES: protein motif:HMM:TIGR01814.1
GO:0030429 - kynureninase activity [Evidence IEA]
GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IEA]
COORDINATES: protein motif:HMM:NF019260.2
COORDINATES: protein motif:HMM:NF012371.2
COORDINATES: protein motif:HMM:NF013646.2
COORDINATES: protein motif:HMM:NF015272.2
GO:0020037 - heme binding [Evidence IEA]; GO:0004833 - tryptophan 2,3-dioxygenase activity [Evidence IEA]
tryptophan 2,3-dioxygenase family protein
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: protein motif:HMM:TIGR01203.1
GO:0006166 - purine ribonucleoside salvage [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02432.1
GO:0016879 - ligase activity, forming carbon-nitrogen bonds [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00585.2
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0006298 - mismatch repair [Evidence IEA]
COORDINATES: protein motif:HMM:NF013327.2
COORDINATES: protein motif:HMM:NF020967.2
COORDINATES: protein motif:HMM:NF016430.2
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: protein motif:HMM:NF012593.2
dicarboxylate/amino acid:cation symporter
COORDINATES: protein motif:HMM:NF014049.2
COORDINATES: protein motif:HMM:NF012787.2
COORDINATES: protein motif:HMM:NF033710.1
type IX secretion system outer membrane channel protein PorV
COORDINATES: protein motif:HMM:NF033707.0
GO:0008234 - cysteine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014269.2
LON peptidase substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012686.2
COORDINATES: protein motif:HMM:NF037565.2
phage tail sheath C-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR02241.1
COORDINATES: protein motif:HMM:NF025431.2
COORDINATES: protein motif:HMM:NF016595.2
COORDINATES: protein motif:HMM:NF016829.2
COORDINATES: protein motif:HMM:TIGR02243.1
COORDINATES: protein motif:HMM:NF039478.1
COORDINATES: protein motif:HMM:NF006879.0
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0008987 - quinolinate synthetase A activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF022137.2
GO:0008168 - methyltransferase activity [Evidence IEA]
GO:0006364 - rRNA processing [Evidence IEA]
class I SAM-dependent rRNA methyltransferase
COORDINATES: protein motif:HMM:NF011494.0
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]; GO:0001510 - RNA methylation [Evidence IEA]
16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB
COORDINATES: similar to AA sequence:RefSeq:WP_002340613.1
GO:0004802 - transketolase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: protein motif:HMM:NF024853.2
vitamin K epoxide reductase family protein
COORDINATES: protein motif:HMM:NF012861.2
GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]
GO:0006821 - chloride transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013117.2
GO:0008381 - mechanosensitive monoatomic ion channel activity [Evidence IEA]
mechanosensitive ion channel family protein
COORDINATES: protein motif:HMM:TIGR00564.1
GO:0004049 - anthranilate synthase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00233.1
GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA]
GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00566.1
GO:0046820 - 4-amino-4-deoxychorismate synthase activity [Evidence IEA]; GO:0004049 - anthranilate synthase activity [Evidence IEA]
aminodeoxychorismate/anthranilate synthase component II
COORDINATES: protein motif:HMM:TIGR01245.1
GO:0004048 - anthranilate phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001377.0
GO:0004425 - indole-3-glycerol-phosphate synthase activity [Evidence IEA]
GO:0006568 - tryptophan metabolic process [Evidence IEA]
indole-3-glycerol phosphate synthase TrpC
COORDINATES: protein motif:HMM:NF012900.2
COORDINATES: similar to AA sequence:RefSeq:WP_018036536.1
GO:0004834 - tryptophan synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00262.1
COORDINATES: protein motif:HMM:NF027451.2
COORDINATES: protein motif:HMM:NF025494.2
COORDINATES: protein motif:HMM:TIGR00614.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013700.2
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01389.1
GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF012493.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
C-terminal helicase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611352.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611351.1
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024935.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF024861.2
COORDINATES: protein motif:HMM:NF039417.1
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: protein motif:HMM:NF024139.2
COORDINATES: protein motif:HMM:NF013152.2
COORDINATES: protein motif:HMM:NF013704.2
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: protein motif:HMM:NF024487.2
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024668.2
COORDINATES: protein motif:HMM:NF013592.2
GO:0004177 - aminopeptidase activity [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024859.2
COORDINATES: protein motif:HMM:NF019301.2
COORDINATES: protein motif:HMM:NF013866.2
COORDINATES: protein motif:HMM:NF013714.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012698.2
serine hydrolase domain-containing protein
COORDINATES: protein motif:HMM:NF019145.2
COORDINATES: protein motif:HMM:NF013123.2
DPP IV N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024999.2
COORDINATES: protein motif:HMM:NF027232.2
COORDINATES: protein motif:HMM:NF015180.2
two-component regulator propeller domain-containing protein
COORDINATES: protein motif:HMM:NF014585.2
hydantoinase B/oxoprolinase family protein
COORDINATES: protein motif:HMM:NF012356.2
COORDINATES: protein motif:HMM:NF014071.2
hydantoinase/oxoprolinase family protein
COORDINATES: protein motif:HMM:TIGR00498.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0006282 - regulation of DNA repair [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00613.1
COORDINATES: protein motif:HMM:NF024245.2
helix-hairpin-helix domain-containing protein
COORDINATES: protein motif:HMM:NF017239.2
COORDINATES: protein motif:HMM:TIGR03798.1
Nif11-like leader peptide family natural product precursor
COORDINATES: protein motif:HMM:NF014385.2
COORDINATES: protein motif:HMM:TIGR00914.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: protein motif:HMM:TIGR01730.1
efflux RND transporter periplasmic adaptor subunit
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
HAMP domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:TIGR00033.1
GO:0004107 - chorismate synthase activity [Evidence IEA]
GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012318.2
trypsin-like peptidase domain-containing protein
COORDINATES: protein motif:HMM:NF013702.2
COORDINATES: protein motif:HMM:NF019581.2
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016438.2
GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity [Evidence IEA]
GO:0016114 - terpenoid biosynthetic process [Evidence IEA]
flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
COORDINATES: protein motif:HMM:NF001540.0
GO:0044237 - cellular metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015338.2
endonuclease/exonuclease/phosphatase family protein
COORDINATES: protein motif:HMM:NF013827.2
rhomboid family intramembrane serine protease
COORDINATES: protein motif:HMM:NF012376.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0008758 - UDP-2,3-diacylglucosamine hydrolase activity [Evidence IEA]
GO:0009245 - lipid A biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02074.1
GO:0008658 - penicillin binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024258.2
COORDINATES: protein motif:HMM:NF011202.0
GO:0050515 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity [Evidence IEA]
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
COORDINATES: protein motif:HMM:NF014606.2
COORDINATES: protein motif:HMM:NF025179.2
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: protein motif:HMM:NF024832.2
COORDINATES: protein motif:HMM:NF012744.2
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: protein motif:HMM:TIGR02669.1
COORDINATES: protein motif:HMM:NF014037.2
COORDINATES: protein motif:HMM:TIGR00057.1
GO:0061710 - L-threonylcarbamoyladenylate synthase [Evidence IEA]
COORDINATES: protein motif:HMM:NF019846.2
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF019325.2
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: protein motif:HMM:NF018028.2
COORDINATES: protein motif:HMM:NF015722.2
SUMF1/EgtB/PvdO family nonheme iron enzyme
COORDINATES: protein motif:HMM:NF014525.2
COORDINATES: protein motif:HMM:NF013760.2
MotA/TolQ/ExbB proton channel family protein
COORDINATES: protein motif:HMM:NF024603.2
COORDINATES: protein motif:HMM:NF012656.2
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012607273.1
YbhB/YbcL family Raf kinase inhibitor-like protein
COORDINATES: protein motif:HMM:NF012925.2
COORDINATES: protein motif:HMM:TIGR03432.1
COORDINATES: protein motif:HMM:NF014500.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00187.1
COORDINATES: protein motif:HMM:NF017044.2
COORDINATES: protein motif:HMM:TIGR00089.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
COORDINATES: protein motif:HMM:NF016290.2
COORDINATES: protein motif:HMM:NF007148.0
COORDINATES: protein motif:HMM:TIGR01379.1
GO:0009030 - thiamine-phosphate kinase activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00539.1
GO:0051989 - coproporphyrinogen dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014678.2
COORDINATES: protein motif:HMM:TIGR03251.1
GO:0045484 - L-lysine 6-transaminase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0017000 - antibiotic biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF009544.0
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0016992 - lipoate synthase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0009107 - lipoate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013791.2
GO:0070069 - cytochrome complex [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]
GO:0019646 - aerobic electron transport chain [Evidence IEA]
COORDINATES: protein motif:HMM:NF012264.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015983.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024247.2
COORDINATES: protein motif:HMM:NF022077.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF019968.2
COORDINATES: protein motif:HMM:NF025679.2
COORDINATES: protein motif:HMM:NF025006.2
carboxypeptidase regulatory-like domain-containing protein
COORDINATES: protein motif:HMM:NF012343.2
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: protein motif:HMM:NF012720.2
COORDINATES: protein motif:HMM:TIGR02229.1
cytochrome C oxidase subunit IV family protein
COORDINATES: protein motif:HMM:NF012344.2
cytochrome c oxidase subunit 3 family protein
COORDINATES: protein motif:HMM:TIGR02891.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02866.1
COORDINATES: protein motif:HMM:NF014667.2
COORDINATES: protein motif:HMM:NF024834.2
COORDINATES: protein motif:HMM:NF023249.2
COORDINATES: protein motif:HMM:NF015851.2
NrfD/PsrC family molybdoenzyme membrane anchor subunit
TAT-variant-translocated molybdopterin oxidoreductase
COORDINATES: protein motif:HMM:NF025875.2
COORDINATES: protein motif:HMM:TIGR00877.1
GO:0004637 - phosphoribosylamine-glycine ligase activity [Evidence IEA]
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016290285.1
COORDINATES: protein motif:HMM:TIGR01070.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0030983 - mismatched DNA binding [Evidence IEA]
bifunctional metallophosphatase/5'-nucleotidase
COORDINATES: protein motif:HMM:NF012790.2
GO:0016783 - sulfurtransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF039501.1
DUF5686 and carboxypeptidase-like regulatory domain-containing protein
COORDINATES: protein motif:HMM:NF014448.2
molybdenum cofactor biosynthesis protein MoaE
COORDINATES: protein motif:HMM:NF014636.2
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018129.2
GO:0031412 - gas vesicle organization [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01236.1
GO:0003842 - 1-pyrroline-5-carboxylate dehydrogenase activity [Evidence IEA]
GO:0006562 - proline catabolic process [Evidence IEA]
L-glutamate gamma-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF037979.1
COORDINATES: protein motif:HMM:NF013927.2
GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:TIGR00546.1
GO:0016410 - N-acyltransferase activity [Evidence IEA]
GO:0042158 - lipoprotein biosynthetic process [Evidence IEA]; GO:0006497 - protein lipidation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00172.1
COORDINATES: protein motif:HMM:NF012345.2
Members of this family of hydrolases with an active site Cys residue belong to MEROPS family C26; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF023401.2
COORDINATES: protein motif:HMM:NF019607.2
COORDINATES: protein motif:HMM:NF013356.2
COORDINATES: protein motif:HMM:NF015506.2
GO:0031992 - energy transducer activity [Evidence IEA]
GO:0016208 - AMP binding [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024091.2
COORDINATES: protein motif:HMM:TIGR04247.1
nitrous oxide reductase family maturation protein NosD
COORDINATES: protein motif:HMM:NF017394.2
nitrous oxide reductase accessory protein NosL
COORDINATES: protein motif:HMM:TIGR04246.1
GO:0050304 - nitrous-oxide reductase activity [Evidence IEA]
GO:0019333 - denitrification pathway [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00738.1
COORDINATES: protein motif:HMM:TIGR01048.1
GO:0008836 - diaminopimelate decarboxylase activity [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009598864.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007369914.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF013767.2
GO:0009927 - histidine phosphotransfer kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012888.2
COORDINATES: protein motif:HMM:NF017932.2
COORDINATES: protein motif:HMM:TIGR02490.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02488.1
GO:0009426 - bacterial-type flagellum basal body, distal rod [Evidence IEA]
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03170.1
GO:0009428 - bacterial-type flagellum basal body, distal rod, P ring [Evidence IEA]
flagellar basal body P-ring formation chaperone FlgA
COORDINATES: protein motif:HMM:NF014195.2
GO:0009427 - bacterial-type flagellum basal body, distal rod, L ring [Evidence IEA]
GO:0003774 - cytoskeletal motor activity [Evidence IEA]
flagellar basal body L-ring protein FlgH
COORDINATES: protein motif:HMM:NF014206.2
GO:0009428 - bacterial-type flagellum basal body, distal rod, P ring [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
flagellar basal body P-ring protein FlgI
COORDINATES: protein motif:HMM:NF016985.2
GO:0044780 - bacterial-type flagellum assembly [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02492.1
GO:0009424 - bacterial-type flagellum hook [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02550.1
COORDINATES: protein motif:HMM:TIGR02037.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0005515 - protein binding [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0006508 - proteolysis [Evidence IEA]; GO:0006950 - response to stress [Evidence IEA]
COORDINATES: protein motif:HMM:NF001220.0
COORDINATES: similar to AA sequence:RefSeq:WP_009256459.1
COORDINATES: protein motif:HMM:NF024771.2
COORDINATES: protein motif:HMM:TIGR02824.1
COORDINATES: protein motif:HMM:NF012874.2
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: protein motif:HMM:NF014604.2
COORDINATES: protein motif:HMM:NF018852.2
GO:0009288 - bacterial-type flagellum [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01395.1
GO:0009425 - bacterial-type flagellum basal body [Evidence IEA]
COORDINATES: protein motif:HMM:NF014143.2
flagellar hook-basal body complex protein FliE
COORDINATES: protein motif:HMM:TIGR00206.1
GO:0009431 - bacterial-type flagellum basal body, MS ring [Evidence IEA]
flagellar basal-body MS-ring/collar protein FliF
COORDINATES: protein motif:HMM:TIGR00207.1
GO:0009433 - bacterial-type flagellum basal body, C ring [Evidence IEA]
GO:0006935 - chemotaxis [Evidence IEA]; GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01026.1
COORDINATES: protein motif:HMM:NF014144.2
COORDINATES: protein motif:HMM:TIGR03506.1
COORDINATES: protein motif:HMM:NF013731.2
COORDINATES: protein motif:HMM:NF025030.2
COORDINATES: protein motif:HMM:NF013867.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0008983 - protein-glutamate O-methyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
protein-glutamate O-methyltransferase CheR
COORDINATES: protein motif:HMM:NF016247.2
GO:0050920 - regulation of chemotaxis [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
GO:0006935 - chemotaxis [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF001965.0
GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0008984 - protein-glutamate methylesterase activity [Evidence IEA]; GO:0050568 - protein-glutamine glutaminase activity [Evidence IEA]
GO:0006935 - chemotaxis [Evidence IEA]; GO:0018277 - protein deamination [Evidence IEA]; GO:0006482 - protein demethylation [Evidence IEA]
chemotaxis response regulator protein-glutamate methylesterase
COORDINATES: protein motif:HMM:NF016292.2
ABC transporter substrate binding protein
COORDINATES: protein motif:HMM:NF012245.2
COORDINATES: protein motif:HMM:NF015693.2
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]; GO:0006935 - chemotaxis [Evidence IEA]
flagellar basal body-associated FliL family protein
COORDINATES: protein motif:HMM:TIGR01397.1
COORDINATES: protein motif:HMM:TIGR02480.1
COORDINATES: protein motif:HMM:NF016250.2
COORDINATES: protein motif:HMM:NF009438.0
The bacterial flagellar biogenesis protein FliP forms a type III secretion system (T3SS)-type pore required for flagellar assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.
flagellar type III secretion system pore protein FliP
COORDINATES: protein motif:HMM:TIGR01402.1
COORDINATES: protein motif:HMM:TIGR01400.1
GO:0044780 - bacterial-type flagellum assembly [Evidence IEA]; GO:0006605 - protein targeting [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00328.1
COORDINATES: similar to AA sequence:RefSeq:WP_018035960.1
COORDINATES: protein motif:HMM:NF012662.2
COORDINATES: protein motif:HMM:NF025001.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
FliA/WhiG family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF025010.2
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024297.2
nuclear transport factor 2 family protein
COORDINATES: protein motif:HMM:NF013766.2
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: protein motif:HMM:TIGR00652.1
GO:0008837 - diaminopimelate epimerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014605.2
COORDINATES: similar to AA sequence:RefSeq:WP_002297874.1
GO:0004068 - aspartate 1-decarboxylase activity [Evidence IEA]
GO:0006523 - alanine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00018.1
GO:0004592 - pantoate-beta-alanine ligase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF008909.0
GO:0004333 - fumarate hydratase activity [Evidence IEA]
GO:0006106 - fumarate metabolic process [Evidence IEA]; GO:0006108 - malate metabolic process [Evidence IEA]; GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: protein motif:HMM:NF012514.2
COORDINATES: protein motif:HMM:NF022588.2
COORDINATES: protein motif:HMM:NF014704.2
COORDINATES: protein motif:HMM:NF020977.2
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: protein motif:HMM:NF013283.2
GO:0019867 - outer membrane [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01417.1
GO:0008965 - phosphoenolpyruvate-protein phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
phosphoenolpyruvate--protein phosphotransferase
COORDINATES: protein motif:HMM:TIGR01003.1
COORDINATES: protein motif:HMM:NF012568.2
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF001381.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0019205 - nucleobase-containing compound kinase activity [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF018980.2
COORDINATES: protein motif:HMM:NF020295.2
NifU N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014677.2
HAMP domain-containing methyl-accepting chemotaxis protein
COORDINATES: protein motif:HMM:NF013915.2
GO:0042158 - lipoprotein biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00442.1
GO:0004821 - histidine-tRNA ligase activity [Evidence IEA]
GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012579.2
GO:1902495 - transmembrane transporter complex [Evidence IEA]
GO:0016301 - kinase activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00005.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0001522 - pseudouridine synthesis [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00732.1
GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: protein motif:HMM:NF008954.0
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF001236.0
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013378.2
COORDINATES: similar to AA sequence:RefSeq:WP_002859435.1
GO:0004550 - nucleoside diphosphate kinase activity [Evidence IEA]
GO:0006165 - nucleoside diphosphate phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF018743.2
GO:0071949 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
glycerol-3-phosphate dehydrogenase/oxidase
COORDINATES: protein motif:HMM:NF012933.2
COORDINATES: protein motif:HMM:NF017181.2
COORDINATES: protein motif:HMM:NF021560.2
COORDINATES: protein motif:HMM:NF025442.2
COORDINATES: protein motif:HMM:NF014625.2
GO:0019213 - deacetylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00420.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF041079.1
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: protein motif:HMM:TIGR01297.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
cation diffusion facilitator family transporter
COORDINATES: protein motif:HMM:NF027474.2
COORDINATES: protein motif:HMM:NF020932.2
COORDINATES: protein motif:HMM:NF016946.2
COORDINATES: protein motif:HMM:NF012314.2
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF037429.2
COORDINATES: protein motif:HMM:TIGR01241.2
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: protein motif:HMM:NF012904.2
GO:0009436 - glyoxylate catabolic process [Evidence IEA]; GO:0071704 - organic substance metabolic process [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: protein motif:HMM:NF010578.0
COORDINATES: protein motif:HMM:NF019334.2
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012862.2
COORDINATES: protein motif:HMM:NF016330.2
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF040257.1
COORDINATES: protein motif:HMM:NF012428.2
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF026257.2
GDSL-type esterase/lipase family protein
COORDINATES: protein motif:HMM:NF012869.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF033521.1
lasso RiPP family leader peptide-containing protein
COORDINATES: protein motif:HMM:NF033535.1
lasso peptide isopeptide bond-forming cyclase
COORDINATES: protein motif:HMM:NF033537.1
COORDINATES: protein motif:HMM:TIGR03026.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013146.2
GO:0005576 - extracellular region [Evidence IEA]
COORDINATES: protein motif:HMM:NF020768.2
GO:0046556 - alpha-L-arabinofuranosidase activity [Evidence IEA]
GO:0031221 - arabinan metabolic process [Evidence IEA]
arabinofuranosidase catalytic domain-containing protein
COORDINATES: protein motif:HMM:TIGR00236.1
GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
COORDINATES: protein motif:HMM:NF019552.2
COORDINATES: protein motif:HMM:NF012760.2
GO:0016742 - hydroxymethyl-, formyl- and related transferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF036807.2
COORDINATES: protein motif:HMM:NF015527.2
GO:0008146 - sulfotransferase activity [Evidence IEA]
sulfotransferase family 2 domain-containing protein
COORDINATES: protein motif:HMM:NF024968.2
COORDINATES: protein motif:HMM:NF021850.2
putative capsular polysaccharide synthesis family protein
COORDINATES: protein motif:HMM:NF016145.2
polysaccharide pyruvyl transferase family protein
COORDINATES: protein motif:HMM:NF013077.2
GO:0050656 - 3'-phosphoadenosine 5'-phosphosulfate binding [Evidence IEA]; GO:0008146 - sulfotransferase activity [Evidence IEA]
sulfotransferase domain-containing protein
COORDINATES: protein motif:HMM:NF024954.2
COORDINATES: protein motif:HMM:NF024751.2
COORDINATES: protein motif:HMM:NF027900.2
COORDINATES: protein motif:HMM:NF015651.2
lysylphosphatidylglycerol synthase transmembrane domain-containing protein
COORDINATES: protein motif:HMM:NF013672.2
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: protein motif:HMM:NF025953.2
COORDINATES: protein motif:HMM:NF014589.2
carbamoyltransferase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF027681.2
NAD-dependent epimerase/dehydratase family protein
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024629.2
COORDINATES: similar to AA sequence:RefSeq:WP_001764656.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005133346.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
glucose-1-phosphate thymidylyltransferase RfbA
COORDINATES: similar to AA sequence:RefSeq:WP_020801803.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01007.1
GO:0045226 - extracellular polysaccharide biosynthetic process [Evidence IEA]
polysaccharide biosynthesis tyrosine autokinase
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012521.2
COORDINATES: protein motif:HMM:NF017085.2
COORDINATES: protein motif:HMM:TIGR00567.1
COORDINATES: protein motif:HMM:NF024743.2
DUF4097 family beta strand repeat-containing protein
COORDINATES: protein motif:HMM:NF015168.2
COORDINATES: protein motif:HMM:NF016895.2
GO:0042834 - peptidoglycan binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014244.2
COORDINATES: protein motif:HMM:NF006886.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008186 - ATP-dependent activity, acting on RNA [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF019850.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0047480 - UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity [Evidence IEA]
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
COORDINATES: protein motif:HMM:NF000594.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020039.2
SMP-30/gluconolactonase/LRE family protein
COORDINATES: protein motif:HMM:NF013259.2
COORDINATES: protein motif:HMM:NF004790.0
GO:0004851 - uroporphyrin-III C-methyltransferase activity [Evidence IEA]
GO:0019354 - siroheme biosynthetic process [Evidence IEA]
uroporphyrinogen-III C-methyltransferase
COORDINATES: protein motif:HMM:NF002537.0
GO:0003824 - catalytic activity [Evidence IEA]; GO:0004604 - phosphoadenylyl-sulfate reductase (thioredoxin) activity [Evidence IEA]
GO:0019379 - sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01470.1
bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase
COORDINATES: protein motif:HMM:NF012492.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008808.1
GO:0016740 - transferase activity [Evidence IEA]
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
GO:0008840 - 4-hydroxy-tetrahydrodipicolinate synthase activity [Evidence IEA]
4-hydroxy-tetrahydrodipicolinate synthase
COORDINATES: protein motif:HMM:TIGR00036.1
GO:0008839 - 4-hydroxy-tetrahydrodipicolinate reductase [Evidence IEA]
4-hydroxy-tetrahydrodipicolinate reductase
COORDINATES: protein motif:HMM:NF014608.2
COORDINATES: protein motif:HMM:NF024423.2
COORDINATES: protein motif:HMM:TIGR02278.1
phenylacetic acid degradation bifunctional protein PaaZ
COORDINATES: protein motif:HMM:NF012360.2
transferase hexapeptide repeat family protein
COORDINATES: protein motif:HMM:NF017451.2
COORDINATES: similar to AA sequence:RefSeq:WP_005133237.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
GO:0019619 - 3,4-dihydroxybenzoate catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02286.1
GO:0010124 - phenylacetate catabolic process [Evidence IEA]
hydroxyphenylacetyl-CoA thioesterase PaaI
COORDINATES: protein motif:HMM:NF014757.2
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: protein motif:HMM:NF006009.0
COORDINATES: protein motif:HMM:NF014651.2
COORDINATES: protein motif:HMM:NF020130.2
COORDINATES: protein motif:HMM:NF004198.0
GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024854.2
COORDINATES: protein motif:HMM:NF024212.2
GO:0042597 - periplasmic space [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007562671.1
GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019464.2
COORDINATES: protein motif:HMM:NF012602.2
COORDINATES: protein motif:HMM:NF024644.2
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
4Fe-4S dicluster domain-containing protein
COORDINATES: protein motif:HMM:NF024214.2
GO:0005525 - GTP binding [Evidence IEA]; GO:0061603 - molybdenum cofactor guanylyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012596.2
COORDINATES: similar to AA sequence:RefSeq:WP_002795307.1
COORDINATES: protein motif:HMM:NF012880.2
transketolase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012424.2
COORDINATES: protein motif:HMM:NF024299.2
COORDINATES: protein motif:HMM:TIGR00693.1
GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017501.2
GO:1990107 - thiazole synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01683.1
COORDINATES: protein motif:HMM:TIGR02352.1
GO:0016647 - oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF015057.2
GO:0050334 - thiaminase activity [Evidence IEA]
GO:0006772 - thiamine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006590957.1
GO:0008902 - hydroxymethylpyrimidine kinase activity [Evidence IEA]; GO:0008972 - phosphomethylpyrimidine kinase activity [Evidence IEA]
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
COORDINATES: protein motif:HMM:TIGR02159.1
1,2-phenylacetyl-CoA epoxidase subunit PaaD
COORDINATES: protein motif:HMM:NF016993.2
1,2-phenylacetyl-CoA epoxidase subunit PaaC
COORDINATES: similar to AA sequence:RefSeq:WP_003857353.1
1,2-phenylacetyl-CoA epoxidase subunit PaaB
COORDINATES: protein motif:HMM:NF010350.0
GO:0097266 - phenylacetyl-CoA 1,2-epoxidase activity [Evidence IEA]
1,2-phenylacetyl-CoA epoxidase subunit PaaA
COORDINATES: protein motif:HMM:NF001492.0
GO:0008252 - nucleotidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00222.1
GO:0003864 - 3-methyl-2-oxobutanoate hydroxymethyltransferase activity [Evidence IEA]
3-methyl-2-oxobutanoate hydroxymethyltransferase
COORDINATES: protein motif:HMM:NF015871.2
COORDINATES: protein motif:HMM:TIGR03303.1
outer membrane protein assembly factor BamA
COORDINATES: protein motif:HMM:NF011405.0
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00054.1
COORDINATES: protein motif:HMM:TIGR00243.1
GO:0030604 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0070402 - NADPH binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
1-deoxy-D-xylulose-5-phosphate reductoisomerase
COORDINATES: protein motif:HMM:NF021492.2
COORDINATES: protein motif:HMM:NF015048.2
GO:0047617 - acyl-CoA hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016228.2
GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003218092.1
GO:0004828 - serine-tRNA ligase activity [Evidence IEA]
GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF016167.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611171.1
COORDINATES: protein motif:HMM:NF023276.2
COORDINATES: protein motif:HMM:NF015630.2
COORDINATES: protein motif:HMM:TIGR00589.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003908 - methylated-DNA-[protein]-cysteine S-methyltransferase activity [Evidence IEA]
methylated-DNA--[protein]-cysteine S-methyltransferase
COORDINATES: protein motif:HMM:NF018190.2
carbohydrate-binding family 9-like protein
COORDINATES: protein motif:HMM:NF019403.2
heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF012907.2
COORDINATES: protein motif:HMM:NF037007.2
COORDINATES: protein motif:HMM:NF024829.2
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF024883.2
COORDINATES: protein motif:HMM:TIGR00090.1
GO:0043022 - ribosome binding [Evidence IEA]
GO:0017148 - negative regulation of translation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024791.2
LytR C-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR03723.1
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
COORDINATES: protein motif:HMM:NF013939.2
COORDINATES: protein motif:HMM:TIGR00247.1
GO:0008932 - lytic endotransglycosylase activity [Evidence IEA]
GO:0071555 - cell wall organization [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF039992.1
COORDINATES: protein motif:HMM:NF017765.2
sodium-dependent bicarbonate transport family permease
COORDINATES: protein motif:HMM:NF027249.2
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: protein motif:HMM:NF013654.2
COORDINATES: protein motif:HMM:NF024827.2
COORDINATES: protein motif:HMM:NF024925.2
COORDINATES: protein motif:HMM:NF001899.0
GO:0004373 - glycogen (starch) synthase activity [Evidence IEA]
GO:0004181 - metallocarboxypeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014919.2
isoamylase early set domain-containing protein
COORDINATES: protein motif:HMM:NF019292.2
nucleoside recognition domain-containing protein
COORDINATES: protein motif:HMM:NF018045.2
COORDINATES: protein motif:HMM:NF040826.1
COORDINATES: protein motif:HMM:NF001824.0
GO:0009380 - excinuclease repair complex [Evidence IEA]
GO:0009381 - excinuclease ABC activity [Evidence IEA]
GO:0006289 - nucleotide-excision repair [Evidence IEA]
COORDINATES: protein motif:HMM:NF024587.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00066.1
GO:0006750 - glutathione biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF006684.0
COORDINATES: protein motif:HMM:NF012503.2
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF014081.2
hybrid sensor histidine kinase/response regulator
COORDINATES: protein motif:HMM:NF010588.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003952 - NAD+ synthase (glutamine-hydrolyzing) activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01084.1
GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF025227.2
COORDINATES: protein motif:HMM:NF021384.2
COORDINATES: similar to AA sequence:RefSeq:WP_003966899.1
COORDINATES: similar to AA sequence:RefSeq:WP_005920153.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016300.2
The SIMPL domain is named for its presence in mouse protein SIMPL (signalling molecule that associates with mouse pelle-like kinase). Bacterial member BP26, from Brucella, was shown to assemble into a channel-like structure, while YggE from E. coli has been associated with resistance to oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012379.2
GO:0004816 - asparagine-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF039201.1
COORDINATES: protein motif:HMM:TIGR01349.1
GO:0045254 - pyruvate dehydrogenase complex [Evidence IEA]
GO:0004742 - dihydrolipoyllysine-residue acetyltransferase activity [Evidence IEA]; GO:0004738 - pyruvate dehydrogenase activity [Evidence IEA]
GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IEA]
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
COORDINATES: protein motif:HMM:NF008854.0
GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IEA]
pyruvate dehydrogenase complex E1 component subunit beta
COORDINATES: protein motif:HMM:TIGR03182.1
GO:0045250 - cytosolic pyruvate dehydrogenase complex [Evidence IEA]
pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha
COORDINATES: protein motif:HMM:NF024881.2
COORDINATES: protein motif:HMM:TIGR00183.1
GO:0004450 - isocitrate dehydrogenase (NADP+) activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
GO:0000156 - phosphorelay response regulator activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF023462.2
COORDINATES: protein motif:HMM:NF012383.2
GO:0009116 - nucleoside metabolic process [Evidence IEA]
phosphoribosyltransferase family protein
COORDINATES: protein motif:HMM:NF025705.2
COORDINATES: protein motif:HMM:NF039827.1
COORDINATES: protein motif:HMM:NF014135.2
COORDINATES: protein motif:HMM:NF012964.2
COORDINATES: protein motif:HMM:NF041192.1
GO:0140737 - encapsulin nanocompartment [Evidence IEA]
family 4C encapsulin nanocompartment shell protein
COORDINATES: protein motif:HMM:NF013045.2
COORDINATES: protein motif:HMM:NF016152.2
COORDINATES: protein motif:HMM:NF013756.2
GO:0010181 - FMN binding [Evidence IEA]; GO:0016646 - oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF019436.2
COORDINATES: protein motif:HMM:TIGR00924.1
COORDINATES: similar to AA sequence:RefSeq:WP_002307075.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024676.2
COORDINATES: protein motif:HMM:TIGR01587.1
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: protein motif:HMM:NF021030.2
GO:0003674 - molecular_function [Evidence IEA]
type I-E CRISPR-associated protein Cse1/CasA
COORDINATES: protein motif:HMM:TIGR02548.1
type I-E CRISPR-associated protein Cse2/CasB
COORDINATES: protein motif:HMM:NF020902.2
type I-E CRISPR-associated protein Cas7/Cse4/CasC
COORDINATES: protein motif:HMM:TIGR01868.1
type I-E CRISPR-associated protein Cas5/CasD
COORDINATES: protein motif:HMM:TIGR01907.1
type I-E CRISPR-associated protein Cas6/Cse3/CasE
COORDINATES: protein motif:HMM:NF014021.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF017020.2
COORDINATES: protein motif:HMM:TIGR03638.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0051607 - defense response to virus [Evidence IEA]; GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type I-E CRISPR-associated endonuclease Cas1e
COORDINATES: protein motif:HMM:NF021242.2
GO:0004521 - endoribonuclease activity [Evidence IEA]
type I-E CRISPR-associated endoribonuclease Cas2e
COORDINATES: protein motif:HMM:NF014516.2
COORDINATES: protein motif:HMM:NF015325.2
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00460.1
GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IEA]
GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00064.1
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005047 - signal recognition particle binding [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]
signal recognition particle-docking protein FtsY
COORDINATES: protein motif:HMM:NF014749.2
COORDINATES: protein motif:HMM:NF013250.2
GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: protein motif:HMM:NF033542.1
too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024545.2
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
nitrilase-related carbon-nitrogen hydrolase
COORDINATES: protein motif:HMM:NF037100.2
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00536.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0018364 - peptidyl-glutamine methylation [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
peptide chain release factor N(5)-glutamine methyltransferase
COORDINATES: protein motif:HMM:TIGR02094.1
COORDINATES: protein motif:HMM:NF012911.2
COORDINATES: similar to AA sequence:RefSeq:WP_007056944.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00531.1
acetyl-CoA carboxylase biotin carboxyl carrier protein
COORDINATES: protein motif:HMM:NF006367.0
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]; GO:0004075 - biotin carboxylase activity [Evidence IEA]
acetyl-CoA carboxylase biotin carboxylase subunit
COORDINATES: similar to AA sequence:RefSeq:WP_001831963.1
GO:0019464 - glycine decarboxylation via glycine cleavage system [Evidence IEA]
COORDINATES: protein motif:HMM:NF000848.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO:0016462 - pyrophosphatase activity [Evidence IEA]
GO:0006177 - GMP biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024850.2
COORDINATES: protein motif:HMM:TIGR03302.1
GO:0065003 - protein-containing complex assembly [Evidence IEA]
outer membrane protein assembly factor BamD
COORDINATES: protein motif:HMM:NF000840.1
GO:0000309 - nicotinamide-nucleotide adenylyltransferase activity [Evidence IEA]; GO:0004515 - nicotinate-nucleotide adenylyltransferase activity [Evidence IEA]
nicotinate (nicotinamide) nucleotide adenylyltransferase
COORDINATES: protein motif:HMM:NF015515.2
COORDINATES: protein motif:HMM:NF018455.2
COORDINATES: protein motif:HMM:TIGR04001.1
bacillithiol biosynthesis deacetylase BshB1
COORDINATES: protein motif:HMM:TIGR00396.1
GO:0004823 - leucine-tRNA ligase activity [Evidence IEA]
GO:0006429 - leucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024773.2
GO:0120225 - coenzyme A binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013237.2
GO:0019346 - transsulfuration [Evidence IEA]
COORDINATES: protein motif:HMM:NF014505.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: protein motif:HMM:NF024886.2
GO:0015074 - DNA integration [Evidence IEA]
phage integrase N-terminal SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010941629.1
COORDINATES: protein motif:HMM:NF008823.0
COORDINATES: protein motif:HMM:NF033788.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: protein motif:HMM:NF000801.0
GO:0016891 - endoribonuclease activity, producing 5'-phosphomonoesters [Evidence IEA]
GO:0042779 - tRNA 3'-trailer cleavage [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00377.1
GO:0043856 - anti-sigma factor antagonist activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014523.2
COORDINATES: protein motif:HMM:TIGR00056.1
COORDINATES: protein motif:HMM:TIGR00367.1
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]
PP2C family protein-serine/threonine phosphatase
COORDINATES: protein motif:HMM:NF016260.2
COORDINATES: similar to AA sequence:RefSeq:WP_004328839.1
COORDINATES: protein motif:HMM:NF015291.2
GH3 auxin-responsive promoter family protein
COORDINATES: protein motif:HMM:TIGR01496.1
GO:0004156 - dihydropteroate synthase activity [Evidence IEA]
GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00159.1
GO:0004016 - adenylate cyclase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003222172.1
GO:0004719 - protein-L-isoaspartate (D-aspartate) O-methyltransferase activity [Evidence IEA]
protein-L-isoaspartate(D-aspartate) O-methyltransferase
COORDINATES: protein motif:HMM:NF013377.2
GO:0004555 - alpha,alpha-trehalase activity [Evidence IEA]
GO:0005991 - trehalose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF023036.2
COORDINATES: protein motif:HMM:NF019844.2
GO:0070064 - proline-rich region binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00004.1
COORDINATES: protein motif:HMM:NF002634.0
GO:0003999 - adenine phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013670.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00416.1
COORDINATES: protein motif:HMM:NF014460.2
COORDINATES: protein motif:HMM:NF016196.2
COORDINATES: protein motif:HMM:NF013955.2
COORDINATES: protein motif:HMM:NF014675.2
COORDINATES: protein motif:HMM:NF014035.2
sulfite exporter TauE/SafE family protein
COORDINATES: protein motif:HMM:NF006421.0
GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]; GO:0046417 - chorismate metabolic process [Evidence IEA]
bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase
COORDINATES: protein motif:HMM:TIGR00737.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024788.2
PLD nuclease N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013799.2
ectonucleotide pyrophosphatase/phosphodiesterase
calcineurin-like phosphoesterase family protein
choice-of-anchor V domain-containing protein
COORDINATES: protein motif:HMM:NF008865.0
GO:0004664 - prephenate dehydratase activity [Evidence IEA]
GO:0009094 - L-phenylalanine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00456.1
GO:0004814 - arginine-tRNA ligase activity [Evidence IEA]
GO:0006420 - arginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF039907.1
COORDINATES: protein motif:HMM:TIGR02210.1
GO:0008360 - regulation of cell shape [Evidence IEA]
COORDINATES: protein motif:HMM:NF013567.2
COORDINATES: protein motif:HMM:NF019229.2
COORDINATES: protein motif:HMM:TIGR03423.1
COORDINATES: protein motif:HMM:TIGR01036.1
GO:0004152 - dihydroorotate dehydrogenase activity [Evidence IEA]
GO:0006222 - UMP biosynthetic process [Evidence IEA]
quinone-dependent dihydroorotate dehydrogenase
COORDINATES: protein motif:HMM:NF017922.2
COORDINATES: protein motif:HMM:NF013736.2
COORDINATES: protein motif:HMM:TIGR00741.1
GO:0022626 - cytosolic ribosome [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA]
GO:0045182 - translation regulator activity [Evidence IEA]
GO:0009386 - translational attenuation [Evidence IEA]
ribosome-associated translation inhibitor RaiA
COORDINATES: protein motif:HMM:NF013319.2
GO:0008452 - RNA ligase activity [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF014058.2
COORDINATES: protein motif:HMM:NF015431.2
LysR substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR01069.1
GO:0030983 - mismatched DNA binding [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012695.2
COORDINATES: protein motif:HMM:TIGR00730.1
COORDINATES: protein motif:HMM:NF024579.2
COORDINATES: protein motif:HMM:NF012905.2
GO:0016746 - acyltransferase activity [Evidence IEA]; GO:0120225 - coenzyme A binding [Evidence IEA]
GO:0009279 - cell outer membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
COORDINATES: protein motif:HMM:NF025680.2
COORDINATES: protein motif:HMM:NF024759.2
COORDINATES: protein motif:HMM:TIGR04256.1
COORDINATES: protein motif:HMM:TIGR02384.1
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: protein motif:HMM:NF001843.0
GO:0034220 - monoatomic ion transmembrane transport [Evidence IEA]
large conductance mechanosensitive channel protein MscL
COORDINATES: protein motif:HMM:NF012421.2
COORDINATES: protein motif:HMM:NF007113.1
nucleoside triphosphate pyrophosphohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_000290791.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: protein motif:HMM:NF013741.2
COORDINATES: protein motif:HMM:TIGR01134.1
GO:0004044 - amidophosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012393.2
COORDINATES: protein motif:HMM:NF025053.2
protein phosphatase 2C domain-containing protein
COORDINATES: protein motif:HMM:NF041131.1
regulatory iron-sulfur-containing complex subunit RicT
COORDINATES: protein motif:HMM:TIGR00678.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF012437.2
GO:0009975 - cyclase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016849 - phosphorus-oxygen lyase activity [Evidence IEA]; GO:0032555 - purine ribonucleotide binding [Evidence IEA]
adenylate/guanylate cyclase domain-containing protein
COORDINATES: protein motif:HMM:NF006696.0
COORDINATES: protein motif:HMM:NF014659.2
COORDINATES: protein motif:HMM:NF014051.2
COORDINATES: protein motif:HMM:NF003807.0
GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00757.1
GO:0004540 - ribonuclease activity [Evidence IEA]
GO:0006401 - RNA catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01800.1
COORDINATES: protein motif:HMM:NF025670.2
COORDINATES: protein motif:HMM:NF012442.2
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024183.2
COORDINATES: protein motif:HMM:NF019285.2
nucleoside transporter C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF015541.2
GO:0004806 - triglyceride lipase activity [Evidence IEA]
GO:0016042 - lipid catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF021352.2
COORDINATES: protein motif:HMM:NF019121.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0008716 - D-alanine-D-alanine ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
D-alanine--D-alanine ligase family protein
COORDINATES: protein motif:HMM:NF036516.2
COORDINATES: protein motif:HMM:TIGR04312.1
COORDINATES: similar to AA sequence:RefSeq:WP_017953234.1
COORDINATES: protein motif:HMM:NF025701.2
protease complex subunit PrcB family protein
COORDINATES: protein motif:HMM:NF021758.2
COORDINATES: protein motif:HMM:NF015423.2
trimeric intracellular cation channel family protein
COORDINATES: protein motif:HMM:NF008740.0
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016648.2
COORDINATES: protein motif:HMM:NF019095.2
GO:0016655 - oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF013625.2
peptidoglycan-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:NF013068.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611812.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
choice-of-anchor Q domain-containing protein
COORDINATES: protein motif:HMM:NF024754.2
COORDINATES: protein motif:HMM:NF013188.2
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF018648.2
GO:0015385 - sodium:proton antiporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF000756.0
GO:0004370 - glycerol kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002381763.1
COORDINATES: protein motif:HMM:NF039832.1
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012584.2
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
COORDINATES: protein motif:HMM:TIGR00667.1
GO:0008914 - leucyltransferase activity [Evidence IEA]
leucyl/phenylalanyl-tRNA--protein transferase
COORDINATES: protein motif:HMM:NF018963.2
COORDINATES: protein motif:HMM:NF002872.1
COORDINATES: protein motif:HMM:NF013382.2
GO:0052624 - 2-phytyl-1,4-naphthoquinone methyltransferase activity [Evidence IEA]
GO:0042372 - phylloquinone biosynthetic process [Evidence IEA]
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE
COORDINATES: protein motif:HMM:NF024970.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001785.0
GO:0008276 - protein methyltransferase activity [Evidence IEA]
GO:0006479 - protein methylation [Evidence IEA]
50S ribosomal protein L11 methyltransferase
COORDINATES: protein motif:HMM:NF014587.2
incomplete; too short partial abutting assembly gap; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0140663 - ATP-dependent FeS chaperone activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013821630.1
COORDINATES: protein motif:HMM:NF015607.2
GO:0008150 - biological_process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00691.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0015970 - guanosine tetraphosphate biosynthetic process [Evidence IEA]
bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_012660847.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0005762 - mitochondrial large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010262457.1
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_019165370.1
GO:0015935 - small ribosomal subunit [Evidence IEA]
GO:0019843 - rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001029758.1
COORDINATES: similar to AA sequence:RefSeq:WP_010262446.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020322760.1
COORDINATES: similar to AA sequence:RefSeq:WP_003130554.1
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00500.1
COORDINATES: protein motif:HMM:TIGR00967.1
GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO:0043952 - protein transport by the Sec complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016911111.1
COORDINATES: similar to AA sequence:RefSeq:WP_001096577.1
COORDINATES: similar to AA sequence:RefSeq:WP_003194373.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000312 - plastid small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002461779.1
COORDINATES: similar to AA sequence:RefSeq:WP_008372550.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009754342.1
COORDINATES: similar to AA sequence:RefSeq:WP_004924130.1
COORDINATES: similar to AA sequence:RefSeq:WP_018376779.1
COORDINATES: similar to AA sequence:RefSeq:WP_011921687.1
COORDINATES: similar to AA sequence:RefSeq:WP_007073026.1
COORDINATES: similar to AA sequence:RefSeq:WP_002514860.1
COORDINATES: protein motif:HMM:NF013027.2
COORDINATES: similar to AA sequence:RefSeq:WP_012741334.1
COORDINATES: similar to AA sequence:RefSeq:WP_006784436.1
COORDINATES: protein motif:HMM:TIGR01044.1
COORDINATES: similar to AA sequence:RefSeq:WP_001829710.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004924105.1
COORDINATES: protein motif:HMM:NF004363.0
COORDINATES: protein motif:HMM:TIGR03953.1
COORDINATES: similar to AA sequence:RefSeq:WP_016293507.1
COORDINATES: similar to AA sequence:RefSeq:WP_012084982.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012147227.1
COORDINATES: similar to AA sequence:RefSeq:WP_002508564.1
COORDINATES: similar to AA sequence:RefSeq:WP_011929565.1
COORDINATES: similar to AA sequence:RefSeq:WP_000246374.1
GO:0015291 - secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004491.0
GO:0004743 - pyruvate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF041546.1
COORDINATES: protein motif:HMM:TIGR04018.1
YpdA family putative bacillithiol disulfide reductase
COORDINATES: protein motif:HMM:TIGR01327.1
GO:0004617 - phosphoglycerate dehydrogenase activity [Evidence IEA]
GO:0006564 - L-serine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF009911.0
4-hydroxy-3-methylbut-2-enyl diphosphate reductase
COORDINATES: protein motif:HMM:NF006579.0
class I SAM-dependent DNA methyltransferase
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF016232.2
COORDINATES: protein motif:HMM:NF037510.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0009035 - type I site-specific deoxyribonuclease activity [Evidence IEA]
type I restriction endonuclease subunit R
COORDINATES: protein motif:HMM:NF006975.0
GO:0016722 - oxidoreductase activity, acting on metal ions [Evidence IEA]
DNA starvation/stationary phase protection protein Dps
COORDINATES: protein motif:HMM:NF040196.1
COORDINATES: protein motif:HMM:NF028479.2
COORDINATES: protein motif:HMM:NF013069.2
COORDINATES: protein motif:HMM:NF033590.1
COORDINATES: protein motif:HMM:NF027890.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611155.1
COORDINATES: protein motif:HMM:NF007024.0
GO:0031419 - cobalamin binding [Evidence IEA]; GO:0008705 - methionine synthase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0009086 - methionine biosynthetic process [Evidence IEA]
carbohydrate binding family 9 domain-containing protein
COORDINATES: protein motif:HMM:NF021446.2
COORDINATES: protein motif:HMM:NF025709.2
COORDINATES: protein motif:HMM:TIGR03598.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
GO:0042254 - ribosome biogenesis [Evidence IEA]
ribosome biogenesis GTP-binding protein YihA/YsxC
COORDINATES: similar to AA sequence:RefSeq:WP_018287377.1
COORDINATES: protein motif:HMM:NF013584.2
COORDINATES: protein motif:HMM:NF011430.0
twin-arginine translocase TatA/TatE family subunit
COORDINATES: protein motif:HMM:TIGR01550.1
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: protein motif:HMM:NF013155.2
GO:0004000 - adenosine deaminase activity [Evidence IEA]
GO:0043101 - purine-containing compound salvage [Evidence IEA]
COORDINATES: protein motif:HMM:NF012497.2
GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IEA]
3-phosphoshikimate 1-carboxyvinyltransferase
COORDINATES: protein motif:HMM:TIGR00644.1
GO:0008297 - single-stranded DNA exodeoxyribonuclease activity [Evidence IEA]
single-stranded-DNA-specific exonuclease RecJ
COORDINATES: similar to AA sequence:RefSeq:WP_002664853.1
YeeE/YedE thiosulfate transporter family protein
COORDINATES: protein motif:HMM:NF016064.2
COORDINATES: protein motif:HMM:NF013517.2
COORDINATES: protein motif:HMM:TIGR00815.1
GO:0015116 - sulfate transmembrane transporter activity [Evidence IEA]
GO:0008272 - sulfate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014697411.1
COORDINATES: protein motif:HMM:NF024811.2
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014015.2
COORDINATES: protein motif:HMM:TIGR01382.1
COORDINATES: protein motif:HMM:NF013618.2
LysM peptidoglycan-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013225.2
GO:0016874 - ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012935.2
COORDINATES: protein motif:HMM:NF020390.2
COORDINATES: protein motif:HMM:NF019040.2
COORDINATES: protein motif:HMM:NF026253.2
COORDINATES: protein motif:HMM:NF012797.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF015445.2
TRAP transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF024273.2
COORDINATES: protein motif:HMM:NF014305.2
COORDINATES: protein motif:HMM:NF018513.2
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: protein motif:HMM:NF018024.2
COORDINATES: protein motif:HMM:NF016262.2
COORDINATES: protein motif:HMM:NF023540.2
putative metalloprotease CJM1_0395 family protein
COORDINATES: protein motif:HMM:NF012546.2
COORDINATES: protein motif:HMM:NF014325.2
GO:0006813 - potassium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014443.2
COORDINATES: protein motif:HMM:TIGR01976.1
COORDINATES: protein motif:HMM:NF016830.2
GO:0015288 - porin activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF015721.2
Asp23/Gls24 family envelope stress response protein
winged helix family transcriptional regulator
COORDINATES: protein motif:HMM:NF024895.2
COORDINATES: protein motif:HMM:NF017103.2
COORDINATES: protein motif:HMM:NF004970.0
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012420022.1
COORDINATES: similar to AA sequence:RefSeq:WP_017370549.1
GO:0004478 - methionine adenosyltransferase activity [Evidence IEA]
GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF004005.0
GO:0004013 - adenosylhomocysteinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012415.2
COORDINATES: protein motif:HMM:NF023379.2
COORDINATES: protein motif:HMM:NF003559.0
GO:0008929 - methylglyoxal synthase activity [Evidence IEA]
GO:0019242 - methylglyoxal biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF026240.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0009378 - four-way junction helicase activity [Evidence IEA]
Holliday junction branch migration DNA helicase RuvB
COORDINATES: protein motif:HMM:NF022751.2
COORDINATES: protein motif:HMM:NF009118.0
COORDINATES: protein motif:HMM:NF017081.2
COORDINATES: protein motif:HMM:NF012488.2
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: protein motif:HMM:NF024736.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611276.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF014214.2
GO:0005615 - extracellular space [Evidence IEA]
COORDINATES: protein motif:HMM:NF004283.0
COORDINATES: protein motif:HMM:NF024852.2
COORDINATES: protein motif:HMM:TIGR00461.1
GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IEA]
aminomethyl-transferring glycine dehydrogenase
COORDINATES: protein motif:HMM:TIGR02191.1
GO:0004525 - ribonuclease III activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF037982.1
COORDINATES: protein motif:HMM:NF012770.2
COORDINATES: protein motif:HMM:NF018305.2
COORDINATES: protein motif:HMM:NF013365.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
DNA-directed RNA polymerase subunit omega
COORDINATES: protein motif:HMM:TIGR01771.1
GO:0004459 - L-lactate dehydrogenase activity [Evidence IEA]
ABC transporter transmembrane domain-containing protein
too many ambiguous residues; Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024918.2
COORDINATES: protein motif:HMM:NF012312.2
GO:0051119 - sugar transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012475.2
COORDINATES: protein motif:HMM:NF012544.2
COORDINATES: similar to AA sequence:RefSeq:WP_012203190.1
GO:0008616 - queuosine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03139.1
GO:0033739 - preQ1 synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024876.2
COORDINATES: protein motif:HMM:NF013998.2
COORDINATES: protein motif:HMM:NF040105.1
COORDINATES: protein motif:HMM:NF005146.0
GO:0004084 - branched-chain-amino-acid transaminase activity [Evidence IEA]
GO:0009081 - branched-chain amino acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012730.2
GO:0006811 - monoatomic ion transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF004126.0
GO:0046912 - acyltransferase activity, acyl groups converted into alkyl on transfer [Evidence IEA]
COORDINATES: protein motif:HMM:NF021824.2
putative nucleotidyltransferase substrate binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR00070.1
GO:0003879 - ATP phosphoribosyltransferase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00069.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01855.1
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
imidazole glycerol phosphate synthase subunit HisH
COORDINATES: protein motif:HMM:TIGR00735.1
GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
imidazole glycerol phosphate synthase subunit HisF
COORDINATES: protein motif:HMM:NF002747.0
GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IEA]; GO:0004636 - phosphoribosyl-ATP diphosphatase activity [Evidence IEA]
bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE
COORDINATES: protein motif:HMM:NF022596.2
COORDINATES: protein motif:HMM:NF016876.2
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: protein motif:HMM:NF037660.2
COORDINATES: protein motif:HMM:NF014703.2
COORDINATES: protein motif:HMM:NF004490.0
GO:0006206 - pyrimidine nucleobase metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013942144.1
COORDINATES: protein motif:HMM:NF021466.2
COORDINATES: similar to AA sequence:RefSeq:WP_016099277.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF021873.2
COORDINATES: similar to AA sequence:RefSeq:WP_002324241.1
GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00042.1
GO:0016462 - pyrophosphatase activity [Evidence IEA]
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_011235429.1
COORDINATES: protein motif:HMM:NF024911.2
COORDINATES: protein motif:HMM:TIGR01528.1
GO:0015663 - nicotinamide mononucleotide transmembrane transporter activity [Evidence IEA]
GO:0015890 - nicotinamide mononucleotide transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016180312.1
GO:0006950 - response to stress [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
COORDINATES: protein motif:HMM:NF021127.2
GO:0045227 - capsule polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012298.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02999.1
COORDINATES: protein motif:HMM:NF019348.2
COORDINATES: protein motif:HMM:NF003673.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016432.2
COORDINATES: protein motif:HMM:NF024776.2
COORDINATES: protein motif:HMM:NF024547.2
phage integrase SAM-like domain-containing protein
COORDINATES: protein motif:HMM:NF013411.2
GO:0070497 - 6-carboxy-5,6,7,8-tetrahydropterin synthase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012434.2
COORDINATES: protein motif:HMM:NF006050.0
COORDINATES: protein motif:HMM:NF024946.2
COORDINATES: protein motif:HMM:NF001314.0
COORDINATES: protein motif:HMM:NF013044.2
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: protein motif:HMM:NF014619.2
COORDINATES: protein motif:HMM:NF024092.2
COORDINATES: protein motif:HMM:NF024197.2
COORDINATES: protein motif:HMM:TIGR03594.1
COORDINATES: protein motif:HMM:TIGR01971.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01128.1
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: protein motif:HMM:NF024872.2
COORDINATES: protein motif:HMM:NF018961.2
COORDINATES: protein motif:HMM:NF025589.2
COORDINATES: protein motif:HMM:TIGR01970.1
COORDINATES: protein motif:HMM:NF003738.0
COORDINATES: protein motif:HMM:TIGR00697.1
GO:1990397 - queuosine salvage [Evidence IEA]
COORDINATES: protein motif:HMM:NF013231.2
COORDINATES: protein motif:HMM:NF000586.1
GO:0004372 - glycine hydroxymethyltransferase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0070905 - serine binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0019264 - glycine biosynthetic process from serine [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00945.1
GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]
COORDINATES: protein motif:HMM:NF017319.2
COORDINATES: protein motif:HMM:NF013593.2
COORDINATES: protein motif:HMM:NF027964.2
saccharopine dehydrogenase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF017853.2
COORDINATES: protein motif:HMM:NF008399.0
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: protein motif:HMM:NF022337.2
COORDINATES: protein motif:HMM:NF022281.2
COORDINATES: protein motif:HMM:NF017007.2
COORDINATES: protein motif:HMM:NF015056.2
COORDINATES: protein motif:HMM:NF013595.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF005550.0
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
ribonucleotide-diphosphate reductase subunit beta
COORDINATES: protein motif:HMM:NF005544.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: protein motif:HMM:NF037832.2
COORDINATES: protein motif:HMM:NF024698.2
pneumococcal-type histidine triad protein
COORDINATES: protein motif:HMM:NF009881.0
COORDINATES: protein motif:HMM:NF025002.2
COORDINATES: protein motif:HMM:NF027971.2
COORDINATES: protein motif:HMM:NF024748.2
COORDINATES: protein motif:HMM:TIGR00065.1
GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01174.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0043093 - FtsZ-dependent cytokinesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF020067.2
FtsQ-type POTRA domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015424522.1
GO:0008763 - UDP-N-acetylmuramate-L-alanine ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01133.1
GO:0050511 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity [Evidence IEA]
undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
COORDINATES: protein motif:HMM:NF013279.2
GO:0051301 - cell division [Evidence IEA]
FtsW/RodA/SpoVE family cell cycle protein
COORDINATES: protein motif:HMM:TIGR01087.1
GO:0008764 - UDP-N-acetylmuramoylalanine-D-glutamate ligase activity [Evidence IEA]
UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
COORDINATES: protein motif:HMM:TIGR00445.1
GO:0008963 - phospho-N-acetylmuramoyl-pentapeptide-transferase activity [Evidence IEA]
phospho-N-acetylmuramoyl-pentapeptide- transferase
COORDINATES: protein motif:HMM:NF001124.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0008360 - regulation of cell shape [Evidence IEA]
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase
COORDINATES: protein motif:HMM:NF013100.2
COORDINATES: protein motif:HMM:NF039650.1
FtsL-like putative cell division protein
COORDINATES: protein motif:HMM:TIGR00006.1
GO:0016434 - rRNA (cytosine) methyltransferase activity [Evidence IEA]
16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
COORDINATES: protein motif:HMM:TIGR00242.1
GO:0051302 - regulation of cell division [Evidence IEA]
division/cell wall cluster transcriptional repressor MraZ
COORDINATES: protein motif:HMM:NF003792.0
GO:0003883 - CTP synthase activity [Evidence IEA]
GO:0006241 - CTP biosynthetic process [Evidence IEA]; GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03156.1
COORDINATES: protein motif:HMM:NF039198.1
COORDINATES: protein motif:HMM:NF014503.2
COORDINATES: protein motif:HMM:NF001503.0
COORDINATES: protein motif:HMM:NF012870.2
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_076611465.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025054.2
COORDINATES: protein motif:HMM:NF025217.2
COORDINATES: protein motif:HMM:NF005559.1
COORDINATES: protein motif:HMM:NF012621.2
heavy-metal-associated domain-containing protein
bifunctional helix-turn-helix transcriptional regulator/GNAT family N-acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_017407810.1
PhzF family phenazine biosynthesis protein
COORDINATES: protein motif:HMM:NF024989.2
COORDINATES: protein motif:HMM:NF024141.2
GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF021538.2
COORDINATES: protein motif:HMM:NF015155.2
COORDINATES: protein motif:HMM:NF022694.2
COORDINATES: protein motif:HMM:NF013722.2
COORDINATES: protein motif:HMM:NF013594.2
COORDINATES: protein motif:HMM:TIGR00611.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003697 - single-stranded DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF003915.0
GO:0016835 - carbon-oxygen lyase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009254 - peptidoglycan turnover [Evidence IEA]
N-acetylmuramic acid 6-phosphate etherase
COORDINATES: protein motif:HMM:TIGR00580.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003690 - double-stranded DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014575.2
GO:0008649 - rRNA methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002506211.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]; GO:0002098 - tRNA wobble uridine modification [Evidence IEA]
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG
COORDINATES: protein motif:HMM:NF003661.0
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
COORDINATES: protein motif:HMM:TIGR03593.1
GO:0051205 - protein insertion into membrane [Evidence IEA]
COORDINATES: protein motif:HMM:NF013022.2
GO:0004526 - ribonuclease P activity [Evidence IEA]; GO:0000049 - tRNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008589899.1
GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015530.2
COORDINATES: protein motif:HMM:NF012470.2
COORDINATES: similar to AA sequence:RefSeq:WP_010966837.1
GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [Evidence IEA]
3-oxoacyl-[acyl-carrier-protein] reductase
COORDINATES: protein motif:HMM:NF012901.2
GO:0004314 - [acyl-carrier-protein] S-malonyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006829.0
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0016746 - acyltransferase activity [Evidence IEA]; GO:0033818 - beta-ketoacyl-acyl-carrier-protein synthase III activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00182.1
GO:0043811 - phosphate:acyl-[acyl carrier protein] acyltransferase activity [Evidence IEA]
GO:0008610 - lipid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01031.1
COORDINATES: protein motif:HMM:NF014657.2
COORDINATES: protein motif:HMM:TIGR00362.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003688 - DNA replication origin binding [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]; GO:0006275 - regulation of DNA replication [Evidence IEA]
chromosomal replication initiator protein DnaA
COORDINATES: protein motif:HMM:TIGR00663.1
COORDINATES: protein motif:HMM:TIGR00361.1
GO:0009290 - DNA import into cell involved in transformation [Evidence IEA]
DNA internalization-related competence protein ComEC/Rec2
COORDINATES: protein motif:HMM:TIGR01951.1
transcription antitermination factor NusB
COORDINATES: similar to AA sequence:RefSeq:WP_019469841.1
COORDINATES: similar to AA sequence:RefSeq:WP_018677334.1
COORDINATES: similar to AA sequence:RefSeq:WP_013616632.1
GO:0070069 - cytochrome complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014386.2
cytochrome d ubiquinol oxidase subunit II
COORDINATES: protein motif:HMM:NF015100.2
RnfABCDGE type electron transport complex subunit D
COORDINATES: protein motif:HMM:TIGR01926.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
This protein belongs to a clade of uncharacterized proteins related to peroxidases such as the alkylhydroperoxidase AhpD; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00654.1
COORDINATES: protein motif:HMM:TIGR01511.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013212.2
GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IEA]; GO:0051087 - chaperone binding [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03346.1
COORDINATES: protein motif:HMM:NF013705.2
COORDINATES: protein motif:HMM:NF012241.2
COORDINATES: protein motif:HMM:NF009602.0
GO:0001727 - lipid kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015674.2
COORDINATES: protein motif:HMM:NF036463.2
COORDINATES: protein motif:HMM:NF020687.2
COORDINATES: protein motif:HMM:NF014074.2
ATP-dependent Clp protease proteolytic subunit
COORDINATES: protein motif:HMM:NF015686.2
COORDINATES: protein motif:HMM:TIGR00665.1
COORDINATES: protein motif:HMM:TIGR00758.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
rhodanese-like domain-containing protein
COORDINATES: protein motif:HMM:NF028441.2
GO:0044874 - lipoprotein localization to outer membrane [Evidence IEA]; GO:0042953 - lipoprotein transport [Evidence IEA]
outer membrane lipoprotein-sorting protein
COORDINATES: protein motif:HMM:TIGR01525.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0015662 - P-type ion transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013695.2
COORDINATES: protein motif:HMM:NF012753.2
COORDINATES: protein motif:HMM:TIGR00521.1
GO:0004632 - phosphopantothenate--cysteine ligase activity [Evidence IEA]; GO:0004633 - phosphopantothenoylcysteine decarboxylase activity [Evidence IEA]
GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]; GO:0015939 - pantothenate metabolic process [Evidence IEA]
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC
COORDINATES: protein motif:HMM:TIGR03263.1
GO:0004385 - guanylate kinase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00255.1
COORDINATES: protein motif:HMM:TIGR00496.1
GO:0008135 - translation factor activity, RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005328724.1
GO:0033862 - UMP kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00116.1
COORDINATES: similar to AA sequence:RefSeq:WP_006236109.1
COORDINATES: similar to AA sequence:RefSeq:WP_001790547.1
COORDINATES: similar to AA sequence:RefSeq:WP_020063210.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF010697.0
GO:0004347 - glucose-6-phosphate isomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015418.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0030151 - molybdenum ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF021487.2
COORDINATES: protein motif:HMM:TIGR02666.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF006870.0
cyclic pyranopterin monophosphate synthase MoaC
COORDINATES: protein motif:HMM:NF010186.0
flotillin-like protein involved in membrane lipid rafts; Derived by automated computational analysis using gene prediction method: Protein Homology.
class A beta-lactamase-related serine hydrolase
COORDINATES: protein motif:HMM:NF023096.2
COORDINATES: similar to AA sequence:RefSeq:WP_098063129.1
COORDINATES: protein motif:HMM:NF024953.2
COORDINATES: protein motif:HMM:TIGR00679.1
GO:0016791 - phosphatase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: protein motif:HMM:NF021988.2
COORDINATES: protein motif:HMM:NF014414.2
COORDINATES: similar to AA sequence:RefSeq:WP_012827968.1
heavy metal-responsive transcriptional regulator
COORDINATES: protein motif:HMM:TIGR00091.1
GO:0008176 - tRNA (guanine-N7-)-methyltransferase activity [Evidence IEA]
tRNA (guanosine(46)-N7)-methyltransferase TrmB
COORDINATES: protein motif:HMM:NF012436.2
COORDINATES: protein motif:HMM:NF020249.2
COORDINATES: protein motif:HMM:NF014426.2
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
COORDINATES: protein motif:HMM:TIGR01499.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008841 - dihydrofolate synthase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004326 - tetrahydrofolylpolyglutamate synthase activity [Evidence IEA]
GO:0006730 - one-carbon metabolic process [Evidence IEA]
folylpolyglutamate synthase/dihydrofolate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017492510.1
COORDINATES: protein motif:HMM:NF028007.2
COORDINATES: protein motif:HMM:TIGR03352.1
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system lipoprotein TssJ
COORDINATES: protein motif:HMM:TIGR03353.2
type VI secretion system baseplate subunit TssK
COORDINATES: protein motif:HMM:NF038228.1
type IVB secretion system protein IcmH/DotU
COORDINATES: protein motif:HMM:TIGR03348.1
type VI secretion system membrane subunit TssM
COORDINATES: protein motif:HMM:NF021393.2
type VI secretion system-associated protein TagF
COORDINATES: protein motif:HMM:NF018516.2
type VI secretion system ImpA family N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF028299.2
type VI secretion system domain-containing protein
COORDINATES: protein motif:HMM:TIGR03358.1
type VI secretion system contractile sheath small subunit
COORDINATES: protein motif:HMM:TIGR03355.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
type VI secretion system contractile sheath large subunit
COORDINATES: protein motif:HMM:NF017454.2
type VI secretion system tube protein Hcp
COORDINATES: protein motif:HMM:TIGR03357.1
type VI secretion system baseplate subunit TssE
COORDINATES: protein motif:HMM:TIGR03359.1
type VI secretion system baseplate subunit TssF
COORDINATES: protein motif:HMM:TIGR03347.1
type VI secretion system baseplate subunit TssG
COORDINATES: protein motif:HMM:TIGR03345.1
COORDINATES: protein motif:HMM:TIGR03361.1
type VI secretion system tip protein TssI/VgrG
COORDINATES: protein motif:HMM:NF017315.2
COORDINATES: protein motif:HMM:NF040127.1
COORDINATES: protein motif:HMM:NF024986.2
COORDINATES: protein motif:HMM:NF021456.2
COORDINATES: protein motif:HMM:NF017730.2
COORDINATES: protein motif:HMM:NF033484.1
GO:0006470 - protein dephosphorylation [Evidence IEA]
Stp1/IreP family PP2C-type Ser/Thr phosphatase
GO:0005524 - ATP binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015724.2
COORDINATES: protein motif:HMM:NF012200.0
choice-of-anchor D domain-containing protein
GO:0047420 - N-acyl-D-amino-acid deacylase activity [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00041.1
GO:0004798 - thymidylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013629.2
COORDINATES: protein motif:HMM:NF015734.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: protein motif:HMM:NF002290.1
GO:0004642 - phosphoribosylformylglycinamidine synthase activity [Evidence IEA]
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]
phosphoribosylformylglycinamidine synthase subunit PurL
COORDINATES: similar to AA sequence:RefSeq:WP_020808024.1
COORDINATES: protein motif:HMM:TIGR01292.1
GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001453.0
COORDINATES: protein motif:HMM:NF013761.2
COORDINATES: protein motif:HMM:NF004231.0
GO:0010181 - FMN binding [Evidence IEA]; GO:0004733 - pyridoxamine-phosphate oxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF003921.0
GO:0009358 - polyphosphate kinase complex [Evidence IEA]
GO:0008976 - polyphosphate kinase activity [Evidence IEA]
GO:0006799 - polyphosphate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014868.2
GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019625.2
class II D-tagatose-bisphosphate aldolase, non-catalytic subunit
GO:0004180 - carboxypeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012664.2
COORDINATES: protein motif:HMM:TIGR00369.1
COORDINATES: similar to AA sequence:RefSeq:WP_011071025.1
COORDINATES: protein motif:HMM:NF024966.2
COORDINATES: protein motif:HMM:NF025120.2
COORDINATES: protein motif:HMM:NF017757.2
COORDINATES: similar to AA sequence:RefSeq:WP_000598292.1
COORDINATES: protein motif:HMM:NF013871.2
COORDINATES: protein motif:HMM:NF024580.2
COORDINATES: protein motif:HMM:NF013658.2
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: protein motif:HMM:NF024977.2
COORDINATES: protein motif:HMM:NF019352.2
COORDINATES: similar to AA sequence:RefSeq:WP_004585059.1
COORDINATES: protein motif:HMM:NF024957.2
COORDINATES: protein motif:HMM:TIGR01229.1
GO:0004053 - arginase activity [Evidence IEA]
GO:0019547 - arginine catabolic process to ornithine [Evidence IEA]
COORDINATES: protein motif:HMM:NF019322.2
COORDINATES: protein motif:HMM:NF012257.2
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: protein motif:HMM:NF022577.2
COORDINATES: protein motif:HMM:NF013775.2
COORDINATES: protein motif:HMM:NF024724.2
COORDINATES: protein motif:HMM:NF012478.2
COORDINATES: similar to AA sequence:RefSeq:WP_004332134.1
GO:0030551 - cyclic nucleotide binding [Evidence IEA]
cyclic nucleotide-binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR00479.1
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
COORDINATES: protein motif:HMM:NF008907.0
GO:0016746 - acyltransferase activity [Evidence IEA]; GO:0004591 - oxoglutarate dehydrogenase (succinyl-transferring) activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit
COORDINATES: protein motif:HMM:TIGR04255.1
COORDINATES: protein motif:HMM:TIGR01146.1
GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) [Evidence IEA]; GO:0045262 - plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
GO:0015986 - proton motive force-driven ATP synthesis [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00962.1
COORDINATES: protein motif:HMM:TIGR01145.1
COORDINATES: protein motif:HMM:TIGR01144.1
GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045264 - plasma membrane proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]
COORDINATES: protein motif:HMM:NF012365.2
COORDINATES: protein motif:HMM:TIGR01131.1
COORDINATES: protein motif:HMM:NF021073.2
COORDINATES: protein motif:HMM:NF016408.2
COORDINATES: protein motif:HMM:TIGR00029.2
COORDINATES: protein motif:HMM:TIGR00276.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0052693 - epoxyqueuosine reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00499.1
GO:0004824 - lysine-tRNA ligase activity [Evidence IEA]
GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012387.2
GO:0016018 - cyclosporin A binding [Evidence IEA]; GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]; GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA]
COORDINATES: protein motif:HMM:NF022188.2
COORDINATES: protein motif:HMM:TIGR04336.1
COORDINATES: protein motif:HMM:NF024891.2
GO:0004141 - dethiobiotin synthase activity [Evidence IEA]
GO:0009102 - biotin biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025004.2
gluconate 2-dehydrogenase subunit 3 family protein
COORDINATES: protein motif:HMM:NF019619.2
GO:0043687 - post-translational protein modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF024921.2
iron ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012738.2
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF001221.0
GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01027.1
GO:0004349 - glutamate 5-kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012844126.1
COORDINATES: protein motif:HMM:TIGR03641.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]
type I-B CRISPR-associated endonuclease Cas1b
COORDINATES: protein motif:HMM:NF014040.2
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021240.2
COORDINATES: protein motif:HMM:TIGR02585.1
type I-B CRISPR-associated protein Cas7/Cst2/DevR
COORDINATES: protein motif:HMM:NF013997.2
COORDINATES: protein motif:HMM:NF012288.2
GO:0030246 - carbohydrate binding [Evidence IEA]; GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0016052 - carbohydrate catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012551.2
COORDINATES: protein motif:HMM:NF006673.0
sugar phosphate isomerase/epimerase family protein
COORDINATES: protein motif:HMM:NF012707.2
transporter substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF015764.2
GO:0015506 - nucleoside:proton symporter activity [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0015858 - nucleoside transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF001040.0
GO:0009379 - Holliday junction helicase complex [Evidence IEA]
Holliday junction branch migration protein RuvA
COORDINATES: protein motif:HMM:NF017743.2
COORDINATES: protein motif:HMM:NF013989.2
COORDINATES: protein motif:HMM:NF007214.0
carboxymuconolactone decarboxylase family protein
COORDINATES: protein motif:HMM:NF012385.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
sigma 54-interacting transcriptional regulator
COORDINATES: protein motif:HMM:NF012708.2
GO:0051219 - phosphoprotein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF037501.2
Swt1 family HEPN domain-containing protein
COORDINATES: protein motif:HMM:NF022273.2
COORDINATES: protein motif:HMM:NF012242.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0140662 - ATP-dependent protein folding chaperone [Evidence IEA]
COORDINATES: protein motif:HMM:NF017633.2
COORDINATES: protein motif:HMM:TIGR00657.1
GO:0004072 - aspartate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF022118.2
COORDINATES: protein motif:HMM:NF013300.2
COORDINATES: protein motif:HMM:NF022591.2
COORDINATES: protein motif:HMM:NF015863.2
PepSY-associated TM helix domain-containing protein
COORDINATES: protein motif:HMM:TIGR01783.1
COORDINATES: protein motif:HMM:TIGR01737.1
phosphoribosylformylglycinamidine synthase subunit PurQ
COORDINATES: protein motif:HMM:NF024592.2
COORDINATES: protein motif:HMM:NF012382.2
pyridoxal phosphate-dependent aminotransferase family protein
COORDINATES: protein motif:HMM:NF040144.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_012096464.1
GO:0007059 - chromosome segregation [Evidence IEA]
COORDINATES: protein motif:HMM:NF025943.2
chondroitinase-B domain-containing protein
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019498.2
FadR/GntR family transcriptional regulator
COORDINATES: protein motif:HMM:TIGR01182.1
GO:0008675 - 2-dehydro-3-deoxy-phosphogluconate aldolase activity [Evidence IEA]; GO:0008700 - 4-hydroxy-2-oxoglutarate aldolase activity [Evidence IEA]
GO:0009255 - Entner-Doudoroff pathway through 6-phosphogluconate [Evidence IEA]; GO:0009084 - glutamine family amino acid biosynthetic process [Evidence IEA]
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
COORDINATES: protein motif:HMM:NF013324.2
COORDINATES: similar to AA sequence:RefSeq:WP_018284512.1
GO:0008519 - ammonium transmembrane transporter activity [Evidence IEA]
GO:0072488 - ammonium transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF016024.2
COORDINATES: protein motif:HMM:NF022182.2
GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
COORDINATES: protein motif:HMM:NF025819.2
COORDINATES: similar to AA sequence:RefSeq:WP_257790189.1
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
molybdopterin-synthase adenylyltransferase MoeB
COORDINATES: protein motif:HMM:NF038353.1
COORDINATES: protein motif:HMM:TIGR02246.1
SEC-C metal-binding domain-containing protein
COORDINATES: protein motif:HMM:NF004349.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004832 - valine-tRNA ligase activity [Evidence IEA]
GO:0006438 - valyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024874.2
COORDINATES: similar to AA sequence:RefSeq:WP_012270584.1
GO:0008479 - queuine tRNA-ribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019315.2
COORDINATES: protein motif:HMM:NF014669.2
COORDINATES: similar to AA sequence:RefSeq:WP_002309610.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611759.1
COORDINATES: protein motif:HMM:NF020177.2
COORDINATES: protein motif:HMM:TIGR00400.1
GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]
GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00755.1
GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence IEA]
16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
COORDINATES: protein motif:HMM:NF019032.2
COORDINATES: protein motif:HMM:NF015085.2
GO:0017004 - cytochrome complex assembly [Evidence IEA]; GO:0017003 - protein-heme linkage [Evidence IEA]
COORDINATES: protein motif:HMM:NF040113.1
COORDINATES: protein motif:HMM:NF013725.2
COORDINATES: protein motif:HMM:NF015344.2
GO:0015232 - heme transmembrane transporter activity [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]; GO:0015886 - heme transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00179.1
GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]
GO:0005743 - mitochondrial inner membrane [Evidence IEA]; GO:0035632 - mitochondrial prohibitin complex [Evidence IEA]
COORDINATES: protein motif:HMM:NF013222.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024871.2
COORDINATES: protein motif:HMM:NF039953.1
COORDINATES: protein motif:HMM:NF001924.0
GO:0004751 - ribose-5-phosphate isomerase activity [Evidence IEA]
GO:0009052 - pentose-phosphate shunt, non-oxidative branch [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01352.1
COORDINATES: protein motif:HMM:NF016763.2
COORDINATES: protein motif:HMM:TIGR00196.1
GO:0052855 - ADP-dependent NAD(P)H-hydrate dehydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013227.2
GO:0008483 - transaminase activity [Evidence IEA]
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: protein motif:HMM:NF001030.0
YebC/PmpR family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:TIGR00228.1
GO:0008821 - crossover junction endodeoxyribonuclease activity [Evidence IEA]
crossover junction endodeoxyribonuclease RuvC
COORDINATES: protein motif:HMM:TIGR00115.1
GO:0005854 - nascent polypeptide-associated complex [Evidence IEA]
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051083 - 'de novo' cotranslational protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002466718.1
GO:0009368 - endopeptidase Clp complex [Evidence IEA]
GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
ATP-dependent Clp endopeptidase proteolytic subunit ClpP
COORDINATES: protein motif:HMM:NF002068.0
GO:0004160 - dihydroxy-acid dehydratase activity [Evidence IEA]
GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO:0009099 - valine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00118.1
GO:0005948 - acetolactate synthase complex [Evidence IEA]
GO:0003984 - acetolactate synthase activity [Evidence IEA]
biosynthetic-type acetolactate synthase large subunit
COORDINATES: protein motif:HMM:NF008864.0
GO:1990610 - acetolactate synthase regulator activity [Evidence IEA]
GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF004017.0
COORDINATES: protein motif:HMM:NF012407.2
GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IEA]
GO:0009098 - leucine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF002086.0
GO:0003852 - 2-isopropylmalate synthase activity [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]; GO:0009098 - leucine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01343.1
3-isopropylmalate dehydratase large subunit
COORDINATES: protein motif:HMM:TIGR02087.1
COORDINATES: similar to AA sequence:RefSeq:WP_018113690.1
GO:0043714 - (R)-citramalate synthase activity [Evidence IEA]
GO:0009097 - isoleucine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF008730.0
GO:0003824 - catalytic activity [Evidence IEA]; GO:0015930 - glutamate synthase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0006537 - glutamate biosynthetic process [Evidence IEA]; GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01317.1
COORDINATES: protein motif:HMM:NF006187.0
GO:0003824 - catalytic activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:TIGR00046.1
COORDINATES: protein motif:HMM:TIGR00810.1
COORDINATES: protein motif:HMM:NF013604.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00010
COORDINATES: protein motif:HMM:NF013909.2
GO:0051540 - metal cluster binding [Evidence IEA]
Nif3-like dinuclear metal center hexameric protein
COORDINATES: protein motif:HMM:NF023128.2
COORDINATES: protein motif:HMM:NF012308.2
COORDINATES: protein motif:HMM:NF040341.1
COORDINATES: protein motif:HMM:NF014043.2
COORDINATES: protein motif:HMM:NF009455.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
carbamoyl-phosphate synthase large subunit
COORDINATES: protein motif:HMM:NF009475.0
GO:0005951 - carbamoyl-phosphate synthase complex [Evidence IEA]
GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IEA]
glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
COORDINATES: protein motif:HMM:NF039587.1
FKBP-type peptidyl-prolyl cis-trans isomerase
COORDINATES: protein motif:HMM:NF004863.0
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF013253.2
COORDINATES: protein motif:HMM:NF012334.2
COORDINATES: protein motif:HMM:NF025418.2
COORDINATES: protein motif:HMM:NF013430.2
COORDINATES: similar to AA sequence:RefSeq:WP_004201169.1
COORDINATES: protein motif:HMM:NF017532.2
phytanoyl-CoA dioxygenase family protein
COORDINATES: protein motif:HMM:NF018431.2
COORDINATES: protein motif:HMM:NF012335.2
zinc-dependent alcohol dehydrogenase family protein
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF015669.2
COORDINATES: protein motif:HMM:TIGR03023.1
undecaprenyl-phosphate glucose phosphotransferase
COORDINATES: protein motif:HMM:NF013742.2
pyridoxal phosphate-dependent aminotransferase
COORDINATES: protein motif:HMM:NF025793.2
GO:0052717 - tRNA-specific adenosine-34 deaminase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015956.2
metal-dependent transcriptional regulator
COORDINATES: protein motif:HMM:TIGR00195.1
GO:0008853 - exodeoxyribonuclease III activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00035.1
GO:0047689 - aspartate racemase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015535.2
COORDINATES: similar to AA sequence:RefSeq:WP_016426512.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IEA]
GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IEA]; GO:0009165 - nucleotide biosynthetic process [Evidence IEA]; GO:0016310 - phosphorylation [Evidence IEA]; GO:0009156 - ribonucleoside monophosphate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00731.1
GO:0008097 - 5S rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: protein motif:HMM:NF013368.2
COORDINATES: protein motif:HMM:NF001955.0
GO:0004427 - inorganic diphosphate phosphatase activity [Evidence IEA]; GO:0009678 - pyrophosphate hydrolysis-driven proton transmembrane transporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF028426.2
COORDINATES: protein motif:HMM:NF022720.2
COORDINATES: protein motif:HMM:TIGR00594.1
COORDINATES: protein motif:HMM:NF013492.2
COORDINATES: protein motif:HMM:TIGR02927.1
2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
COORDINATES: protein motif:HMM:NF015000.2
COORDINATES: protein motif:HMM:NF025420.2
GO:0005829 - cytosol [Evidence IEA]; GO:0005777 - peroxisome [Evidence IEA]
GO:0035539 - 8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity [Evidence IEA]; GO:0008413 - 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity [Evidence IEA]; GO:0003986 - acetyl-CoA hydrolase activity [Evidence IEA]; GO:0010945 - CoA pyrophosphatase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]
GO:0015938 - coenzyme A catabolic process [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009132 - nucleoside diphosphate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01266.1
GO:0004334 - fumarylacetoacetase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006572 - tyrosine catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025874.2
COORDINATES: protein motif:HMM:NF005871.0
COORDINATES: protein motif:HMM:NF033679.1
dehydrogenase E1 component subunit alpha/beta
COORDINATES: protein motif:HMM:TIGR00492.1
GO:0008784 - alanine racemase activity [Evidence IEA]
OprO/OprP family phosphate-selective porin
COORDINATES: protein motif:HMM:NF014664.2
COORDINATES: protein motif:HMM:NF012927.2
COORDINATES: protein motif:HMM:NF028235.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:TIGR00857.1
GO:0004151 - dihydroorotase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024860.2
COORDINATES: protein motif:HMM:NF022760.2
COORDINATES: protein motif:HMM:NF018178.2
COORDINATES: protein motif:HMM:NF014896.2
COORDINATES: protein motif:HMM:NF021507.2
phosphodiester glycosidase family protein
COORDINATES: protein motif:HMM:TIGR00121.1
GO:0004077 - biotin-[acetyl-CoA-carboxylase] ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00671.1
GO:0004594 - pantothenate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004018.0
GO:0004849 - uridine kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015820.2
COORDINATES: protein motif:HMM:NF024143.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00023
COORDINATES: protein motif:HMM:NF017119.2
COORDINATES: protein motif:HMM:TIGR01480.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
copper resistance system multicopper oxidase
COORDINATES: protein motif:HMM:NF039498.1
COORDINATES: protein motif:HMM:NF023095.2
COORDINATES: protein motif:HMM:NF013862.2
GO:0006629 - lipid metabolic process [Evidence IEA]
patatin-like phospholipase family protein
COORDINATES: protein motif:HMM:NF015451.2
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016107.2
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: protein motif:HMM:NF019932.2
COORDINATES: protein motif:HMM:NF016130.2
COORDINATES: protein motif:HMM:NF021378.2
COORDINATES: protein motif:HMM:NF013524.2
COORDINATES: protein motif:HMM:NF014740.2
COORDINATES: protein motif:HMM:TIGR03570.1
COORDINATES: protein motif:HMM:NF014453.2
GO:0006486 - protein glycosylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF022007.2
UDP-glucose/GDP-mannose dehydrogenase family protein
COORDINATES: protein motif:HMM:NF015557.2
COORDINATES: protein motif:HMM:NF004040.0
bifunctional sulfate adenylyltransferase/adenylylsulfate kinase
COORDINATES: protein motif:HMM:NF026018.2
polysaccharide biosynthesis C-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR00696.1
WecB/TagA/CpsF family glycosyltransferase
COORDINATES: protein motif:HMM:TIGR03022.1
undecaprenyl-phosphate galactose phosphotransferase WbaP
COORDINATES: protein motif:HMM:TIGR02100.1
GO:0004133 - glycogen debranching enzyme activity [Evidence IEA]
GO:0005980 - glycogen catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF023395.2
histidine triad nucleotide-binding protein
COORDINATES: protein motif:HMM:NF006826.0
COORDINATES: protein motif:HMM:NF009381.0
COORDINATES: protein motif:HMM:TIGR03725.1
GO:0003725 - double-stranded RNA binding [Evidence IEA]
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB
COORDINATES: protein motif:HMM:TIGR00515.1
acetyl-CoA carboxylase, carboxyltransferase subunit beta
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF013782.2
GO:0016790 - thiolester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014132.2
SCP2 sterol-binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR01358.1
GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IEA]
3-deoxy-7-phosphoheptulonate synthase class II
COORDINATES: protein motif:HMM:TIGR00152.1
GO:0004140 - dephospho-CoA kinase activity [Evidence IEA]
GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]
Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
GAF domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF022738.2
COORDINATES: protein motif:HMM:TIGR00838.1
GO:0004056 - argininosuccinate lyase activity [Evidence IEA]
GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
COORDINATES: protein motif:HMM:NF012899.2
GO:0003991 - acetylglutamate kinase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF003384.0
GO:0016597 - amino acid binding [Evidence IEA]; GO:0043857 - N-acetylornithine carbamoyltransferase activity [Evidence IEA]
aspartate aminotransferase family protein
COORDINATES: protein motif:HMM:TIGR01850.1
GO:0003942 - N-acetyl-gamma-glutamyl-phosphate reductase activity [Evidence IEA]
N-acetyl-gamma-glutamyl-phosphate reductase
COORDINATES: protein motif:HMM:NF001770.0
GO:0004055 - argininosuccinate synthase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006526 - arginine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014296.2
GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence IEA]
methylenetetrahydrofolate reductase [NAD(P)H]
COORDINATES: protein motif:HMM:TIGR00043.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004540 - ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012534.2
COORDINATES: protein motif:HMM:NF016156.2
COORDINATES: protein motif:HMM:NF010925.0
GO:0033819 - lipoyl(octanoyl) transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04189.1
COORDINATES: protein motif:HMM:NF025887.2
COORDINATES: protein motif:HMM:NF019540.2
type II toxin-antitoxin system HicA family toxin
COORDINATES: protein motif:HMM:NF008775.0
GO:0045900 - negative regulation of translational elongation [Evidence IEA]
energy-dependent translational throttle protein EttA
COORDINATES: similar to AA sequence:RefSeq:WP_012077405.1
GO:0009009 - site-specific recombinase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024627.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015495618.1
COORDINATES: protein motif:HMM:NF021371.2
COORDINATES: similar to AA sequence:RefSeq:WP_011244903.1
COORDINATES: protein motif:HMM:TIGR00103.1
YbaB/EbfC family nucleoid-associated protein
COORDINATES: protein motif:HMM:NF004046.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF007495.0
COORDINATES: protein motif:HMM:NF003820.0
GO:0016153 - urocanate hydratase activity [Evidence IEA]
GO:0006548 - histidine catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF006871.0
GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01224.1
GO:0050480 - imidazolonepropionase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012913.2
COORDINATES: protein motif:HMM:NF014668.2
GO:0006282 - regulation of DNA repair [Evidence IEA]
COORDINATES: protein motif:HMM:NF006054.0
GO:0004731 - purine-nucleoside phosphorylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014776491.1
COORDINATES: protein motif:HMM:TIGR01141.1
GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014618.2
COORDINATES: protein motif:HMM:NF021586.2
GO:0071793 - bacillithiol biosynthetic process [Evidence IEA]
bacillithiol biosynthesis cysteine-adding enzyme BshC
COORDINATES: protein motif:HMM:NF013143.2
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0030001 - metal ion transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002349238.1
metal ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF013465.2
zinc ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:TIGR00149.1
secondary thiamine-phosphate synthase enzyme YjbQ
COORDINATES: protein motif:HMM:NF016203.2
COORDINATES: protein motif:HMM:NF002969.0
COORDINATES: protein motif:HMM:NF013263.2
COORDINATES: protein motif:HMM:NF012516.2
COORDINATES: protein motif:HMM:TIGR01832.1
GO:0008678 - 2-deoxy-D-gluconate 3-dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0000272 - polysaccharide catabolic process [Evidence IEA]
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD
COORDINATES: protein motif:HMM:NF002091.0
GO:0008697 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity [Evidence IEA]
GO:0045490 - pectin catabolic process [Evidence IEA]
5-dehydro-4-deoxy-D-glucuronate isomerase
T9SS C-terminal target domain-containing protein
COORDINATES: protein motif:HMM:NF002794.0
GO:0008880 - glucuronate isomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012754.2
COORDINATES: protein motif:HMM:NF019113.2
COORDINATES: protein motif:HMM:NF027479.2
COORDINATES: protein motif:HMM:NF013276.2
GO:0030599 - pectinesterase activity [Evidence IEA]
GO:0042545 - cell wall modification [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01127.1
GO:0004794 - L-threonine ammonia-lyase activity [Evidence IEA]
GO:0006549 - isoleucine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016291047.1
GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA]
bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD
COORDINATES: protein motif:HMM:TIGR04409.1
GO:0015221 - lipopolysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015920 - lipopolysaccharide transport [Evidence IEA]
LPS export ABC transporter periplasmic protein LptC
COORDINATES: protein motif:HMM:NF024500.2
COORDINATES: similar to AA sequence:RefSeq:WP_004091254.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0015221 - lipopolysaccharide transmembrane transporter activity [Evidence IEA]
LPS export ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:TIGR00234.1
GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA]
GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF001484.0
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_003202249.1
GO:0016149 - translation release factor activity, codon specific [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00166.1
COORDINATES: similar to AA sequence:RefSeq:WP_018108318.1
COORDINATES: protein motif:HMM:TIGR00158.1
COORDINATES: protein motif:HMM:NF014713.2
COORDINATES: protein motif:HMM:NF019313.2
COORDINATES: protein motif:HMM:TIGR02151.1
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA]
type 2 isopentenyl-diphosphate Delta-isomerase
COORDINATES: protein motif:HMM:NF033711.1
COORDINATES: protein motif:HMM:TIGR00963.1
GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: protein motif:HMM:NF008121.0
COORDINATES: protein motif:HMM:NF014877.2
COORDINATES: protein motif:HMM:NF012673.2
GO:0070191 - methionine-R-sulfoxide reductase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016162.2
COORDINATES: protein motif:HMM:NF015406.2
GO:0003904 - deoxyribodipyrimidine photo-lyase activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF040426.1
COORDINATES: protein motif:HMM:NF015999.2
COORDINATES: protein motif:HMM:NF014062.2
GO:0006002 - fructose 6-phosphate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013843.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0019136 - deoxynucleoside kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025486.2
COORDINATES: protein motif:HMM:NF013362.2
RsmB/NOP family class I SAM-dependent RNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_016290038.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
ATP-dependent Clp protease ATP-binding subunit ClpX
COORDINATES: protein motif:HMM:TIGR00765.1
YihY/virulence factor BrkB family protein
COORDINATES: protein motif:HMM:NF006959.0
GO:0004072 - aspartate kinase activity [Evidence IEA]; GO:0004412 - homoserine dehydrogenase activity [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
GO:0008652 - amino acid biosynthetic process [Evidence IEA]; GO:0009067 - aspartate family amino acid biosynthetic process [Evidence IEA]
bifunctional aspartate kinase/homoserine dehydrogenase I
COORDINATES: protein motif:HMM:NF016019.2
COORDINATES: protein motif:HMM:NF022741.2
COORDINATES: protein motif:HMM:NF012931.2
COORDINATES: protein motif:HMM:NF024181.2
SusD/RagB family nutrient-binding outer membrane lipoprotein
COORDINATES: protein motif:HMM:NF024685.2
COORDINATES: protein motif:HMM:NF025015.2
COORDINATES: protein motif:HMM:NF017569.2
COORDINATES: protein motif:HMM:NF001753.0
GO:0070403 - NAD+ binding [Evidence IEA]; GO:0017136 - NAD-dependent histone deacetylase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024973.2
COORDINATES: similar to AA sequence:RefSeq:WP_000280860.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004797 - thymidine kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014378.2
COORDINATES: protein motif:HMM:NF014366.2
part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; the catalytic subunits are similar to succinate dehydrogenase SdhAB; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020882957.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
succinate dehydrogenase/fumarate reductase iron-sulfur subunit
COORDINATES: protein motif:HMM:NF006686.0
GO:0000104 - succinate dehydrogenase activity [Evidence IEA]
GO:0009061 - anaerobic respiration [Evidence IEA]
fumarate reductase (quinol) flavoprotein subunit
COORDINATES: protein motif:HMM:TIGR02046.1
succinate dehydrogenase cytochrome b subunit
COORDINATES: protein motif:HMM:NF005749.0
fumarate reductase/succinate dehydrogenase flavoprotein subunit
COORDINATES: protein motif:HMM:NF005746.0
COORDINATES: protein motif:HMM:NF013345.2
COORDINATES: protein motif:HMM:NF009980.0
COORDINATES: similar to AA sequence:RefSeq:WP_020045332.1
COORDINATES: protein motif:HMM:NF022481.2
COORDINATES: protein motif:HMM:TIGR00096.1
GO:0008649 - rRNA methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0000451 - rRNA 2'-O-methylation [Evidence IEA]
16S rRNA (cytidine(1402)-2'-O)-methyltransferase
COORDINATES: protein motif:HMM:TIGR03999.1
N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA
COORDINATES: protein motif:HMM:NF019128.2
COORDINATES: protein motif:HMM:NF012607.2
COORDINATES: protein motif:HMM:NF000908.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF003625.0
GO:0033856 - pyridoxine 5'-phosphate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015559.2
COORDINATES: protein motif:HMM:TIGR01510.1
GO:0004595 - pantetheine-phosphate adenylyltransferase activity [Evidence IEA]
pantetheine-phosphate adenylyltransferase
COORDINATES: protein motif:HMM:TIGR00608.1
COORDINATES: similar to AA sequence:RefSeq:WP_009252629.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF020037.2
COORDINATES: protein motif:HMM:NF038402.1
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: protein motif:HMM:NF024701.2
3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002484357.1
COORDINATES: protein motif:HMM:NF009586.0
COORDINATES: protein motif:HMM:NF025210.2
COORDINATES: protein motif:HMM:TIGR00418.1
GO:0004829 - threonine-tRNA ligase activity [Evidence IEA]
GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02822.1
COORDINATES: protein motif:HMM:TIGR04508.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF008967.0
GO:0003844 - 1,4-alpha-glucan branching enzyme activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA]; GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0005978 - glycogen biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF021778.2
beta-propeller fold lactonase family protein
COORDINATES: protein motif:HMM:NF004741.0
NADH-quinone oxidoreductase subunit NuoH
COORDINATES: similar to AA sequence:RefSeq:WP_016292972.1
GO:0004750 - D-ribulose-phosphate 3-epimerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00595.1
GO:0005658 - alpha DNA polymerase:primase complex [Evidence IEA]
GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0003688 - DNA replication origin binding [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
signal recognition particle sRNA small type
COORDINATES: nucleotide motif:Rfam:14.4:RF00169
COORDINATES: similar to AA sequence:RefSeq:WP_011275581.1
COORDINATES: protein motif:HMM:TIGR02472.1
COORDINATES: protein motif:HMM:TIGR00217.1
GO:0004134 - 4-alpha-glucanotransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015648.2
COORDINATES: protein motif:HMM:TIGR03440.2
GO:0052699 - ergothioneine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03438.1
GO:0030745 - dimethylhistidine N-methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012922.2
GO:0004427 - inorganic diphosphate phosphatase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0006796 - phosphate-containing compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00266.1
COORDINATES: protein motif:HMM:NF001664.0
COORDINATES: protein motif:HMM:NF012364.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
DNA polymerase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016292446.1
GO:0004827 - proline-tRNA ligase activity [Evidence IEA]
GO:0006433 - prolyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF015316.2
outer membrane protein transport protein
COORDINATES: protein motif:HMM:NF013132.2
GO:0008509 - monoatomic anion transmembrane transporter activity [Evidence IEA]
GO:0006820 - monoatomic anion transport [Evidence IEA]
DASS family sodium-coupled anion symporter
COORDINATES: protein motif:HMM:NF041359.1
COORDINATES: protein motif:HMM:TIGR02070.1
GO:0016020 - membrane [Evidence IEA]; GO:0009274 - peptidoglycan-based cell wall [Evidence IEA]
monofunctional biosynthetic peptidoglycan transglycosylase
COORDINATES: protein motif:HMM:NF001263.0
GO:0003677 - DNA binding [Evidence IEA]; GO:0070063 - RNA polymerase binding [Evidence IEA]
GO:0032784 - regulation of DNA-templated transcription elongation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013073.2
COORDINATES: similar to AA sequence:RefSeq:WP_001594140.1
COORDINATES: protein motif:HMM:NF019042.2
COORDINATES: protein motif:HMM:NF005906.0
DEDD exonuclease domain-containing protein
COORDINATES: protein motif:HMM:NF012585.2
COORDINATES: protein motif:HMM:NF037183.2
permease-like cell division protein FtsX
COORDINATES: protein motif:HMM:TIGR00238.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0016853 - isomerase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015289.2
EutN/CcmL family microcompartment protein
COORDINATES: protein motif:HMM:NF000584.1
GO:0008964 - phosphoenolpyruvate carboxylase activity [Evidence IEA]
GO:0015977 - carbon fixation [Evidence IEA]; GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02127.1
GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01498.1
GO:0003848 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity [Evidence IEA]
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase
COORDINATES: protein motif:HMM:NF018425.2
COORDINATES: protein motif:HMM:NF017142.2
COORDINATES: protein motif:HMM:NF018659.2
SdiA-regulated domain-containing protein
COORDINATES: protein motif:HMM:NF040152.1
COORDINATES: protein motif:HMM:NF013570.2
GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]
GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF015898.2
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
BlaI/MecI/CopY family transcriptional regulator
COORDINATES: protein motif:HMM:NF017390.2
COORDINATES: protein motif:HMM:NF015957.2
GO:0080135 - regulation of cellular response to stress [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02727.1
GO:0030272 - 5-formyltetrahydrofolate cyclo-ligase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018286751.1
GO:0048501 - signal recognition particle, plasma membrane targeting [Evidence IEA]
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005048 - signal sequence binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016424889.1
COORDINATES: protein motif:HMM:TIGR02273.1
Essential for efficient processing of 16S rRNA; Essential for efficient processing of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00088.1
GO:0052906 - tRNA (guanine(37)-N(1))-methyltransferase activity [Evidence IEA]
tRNA (guanosine(37)-N1)-methyltransferase TrmD
COORDINATES: similar to AA sequence:RefSeq:WP_005590628.1
COORDINATES: protein motif:HMM:NF014658.2
COORDINATES: similar to AA sequence:RefSeq:WP_006189841.1
COORDINATES: similar to AA sequence:RefSeq:WP_003021871.1
GO:0009320 - phosphoribosylaminoimidazole carboxylase complex [Evidence IEA]
GO:0004638 - phosphoribosylaminoimidazole carboxylase activity [Evidence IEA]
5-(carboxyamino)imidazole ribonucleotide mutase
COORDINATES: protein motif:HMM:NF004680.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004638 - phosphoribosylaminoimidazole carboxylase activity [Evidence IEA]
5-(carboxyamino)imidazole ribonucleotide synthase
COORDINATES: protein motif:HMM:NF013727.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0015616 - DNA translocase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024882.2
DNA translocase FtsK 4TM domain-containing protein
COORDINATES: protein motif:HMM:NF015962.2
COORDINATES: similar to AA sequence:RefSeq:WP_017950434.1
GO:0004047 - aminomethyltransferase activity [Evidence IEA]
glycine cleavage system aminomethyltransferase GcvT
COORDINATES: protein motif:HMM:NF014234.2
COORDINATES: protein motif:HMM:NF019344.2
ATP-dependent Clp protease ATP-binding subunit
COORDINATES: protein motif:HMM:TIGR00049.1
iron-sulfur cluster assembly accessory protein
COORDINATES: protein motif:HMM:NF013125.2
COORDINATES: protein motif:HMM:NF012601.2
COORDINATES: protein motif:HMM:TIGR02589.1
type I-C CRISPR-associated protein Cas7/Csd2
COORDINATES: protein motif:HMM:TIGR01863.1
GO:0005575 - cellular_component [Evidence IEA]
type I-C CRISPR-associated protein Cas8c/Csd1
COORDINATES: protein motif:HMM:TIGR01876.1
type I-C CRISPR-associated protein Cas5c
COORDINATES: protein motif:HMM:NF004051.0
COORDINATES: protein motif:HMM:NF025490.2
COORDINATES: protein motif:HMM:NF016032.2
GO:0004357 - glutamate-cysteine ligase activity [Evidence IEA]
GO:0042398 - cellular modified amino acid biosynthetic process [Evidence IEA]
glutamate-cysteine ligase family protein
COORDINATES: protein motif:HMM:NF016658.2
COORDINATES: protein motif:HMM:TIGR02823.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014165.2
COORDINATES: protein motif:HMM:NF015995.2
glycine betaine ABC transporter substrate-binding protein
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF014465.2
mercuric transporter MerT family protein
COORDINATES: protein motif:HMM:TIGR02053.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015213.2
GO:0033573 - high-affinity iron permease complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0005381 - iron ion transmembrane transporter activity [Evidence IEA]
GO:0034755 - iron ion transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014655.2
COORDINATES: protein motif:HMM:NF015438.2
COORDINATES: protein motif:HMM:NF025637.2
COORDINATES: protein motif:HMM:NF003767.0
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]; GO:0016667 - oxidoreductase activity, acting on a sulfur group of donors [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]
protein-methionine-sulfoxide reductase catalytic subunit MsrP
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO:0009451 - RNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF027445.2
COORDINATES: protein motif:HMM:NF021759.2
COORDINATES: protein motif:HMM:NF021942.2
COORDINATES: protein motif:HMM:NF013811.2
COORDINATES: protein motif:HMM:NF014533.2
PAS domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:TIGR02136.1
PstS family phosphate ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:TIGR02138.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter permease subunit PstC
COORDINATES: protein motif:HMM:TIGR00974.1
COORDINATES: similar to AA sequence:RefSeq:WP_004810563.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter ATP-binding protein PstB
COORDINATES: protein motif:HMM:TIGR02135.1
GO:0051049 - regulation of transport [Evidence IEA]
phosphate signaling complex protein PhoU
COORDINATES: similar to AA sequence:RefSeq:WP_018225445.1
COORDINATES: protein motif:HMM:NF025598.2
COORDINATES: protein motif:HMM:NF021351.2
COORDINATES: protein motif:HMM:NF013245.2
COORDINATES: similar to AA sequence:RefSeq:WP_098060908.1
GO:0003747 - translation release factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006567.0
GO:0008734 - L-aspartate oxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014617.2
GO:0000028 - ribosomal small subunit assembly [Evidence IEA]; GO:0042274 - ribosomal small subunit biogenesis [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01953.1
COORDINATES: protein motif:HMM:TIGR00487.1
COORDINATES: protein motif:HMM:TIGR00082.1
GO:0019843 - rRNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00431.1
GO:0004730 - pseudouridylate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004160.0
GO:0003919 - FMN adenylyltransferase activity [Evidence IEA]
bifunctional riboflavin kinase/FAD synthetase
COORDINATES: similar to AA sequence:RefSeq:WP_011275926.1
COORDINATES: similar to AA sequence:RefSeq:WP_009567342.1
GO:0004654 - polyribonucleotide nucleotidyltransferase activity [Evidence IEA]
GO:0006402 - mRNA catabolic process [Evidence IEA]
polyribonucleotide nucleotidyltransferase
COORDINATES: protein motif:HMM:NF014654.2
COORDINATES: protein motif:HMM:TIGR00281.1
COORDINATES: protein motif:HMM:TIGR00093.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012690.2
COORDINATES: similar to AA sequence:RefSeq:WP_005875762.1
COORDINATES: protein motif:HMM:TIGR04283.1
TIGR04283 family arsenosugar biosynthesis glycosyltransferase
COORDINATES: protein motif:HMM:TIGR00383.1
GO:0015087 - cobalt ion transmembrane transporter activity [Evidence IEA]; GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]
GO:0006824 - cobalt ion transport [Evidence IEA]; GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF019130.2
GO:0046559 - alpha-glucuronidase activity [Evidence IEA]
GO:0045493 - xylan catabolic process [Evidence IEA]
alpha-glucuronidase family glycosyl hydrolase
COORDINATES: protein motif:HMM:NF006132.0
COORDINATES: protein motif:HMM:TIGR01312.1
GO:0005515 - protein binding [Evidence IEA]; GO:0004856 - xylulokinase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0005997 - xylulose metabolic process [Evidence IEA]
glycoside hydrolase family 3 C-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR00792.1
COORDINATES: protein motif:HMM:NF018004.2
3-phosphoglycerate dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016290567.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0004648 - O-phospho-L-serine:2-oxoglutarate aminotransferase activity [Evidence IEA]
3-phosphoserine/phosphohydroxythreonine transaminase
COORDINATES: protein motif:HMM:NF006942.0
GO:0008746 - NAD(P)+ transhydrogenase activity [Evidence IEA]
Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha
COORDINATES: protein motif:HMM:NF024179.2
COORDINATES: protein motif:HMM:NF014307.2
NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta
COORDINATES: protein motif:HMM:NF012863.2
COORDINATES: protein motif:HMM:TIGR00044.1
YggS family pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF016959.2
COORDINATES: protein motif:HMM:TIGR00392.1
GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA]
GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013427.2
COORDINATES: protein motif:HMM:NF013421.2
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016291381.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021981.2
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF015679.2
COORDINATES: protein motif:HMM:NF033644.1
UpxY family transcription antiterminator
COORDINATES: protein motif:HMM:TIGR01280.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00237.1
COORDINATES: protein motif:HMM:NF013607.2
GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]
low molecular weight protein-tyrosine-phosphatase
COORDINATES: protein motif:HMM:NF015818.2
COORDINATES: protein motif:HMM:NF004397.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0006261 - DNA-templated DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF015370.2
GO:0045300 - acyl-[acyl-carrier-protein] desaturase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00494.1
GO:1903425 - fluoride transmembrane transporter activity [Evidence IEA]
GO:1903424 - fluoride transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04191.1
COORDINATES: similar to AA sequence:RefSeq:WP_016448039.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
ATP-dependent protease ATPase subunit HslU
COORDINATES: protein motif:HMM:NF014045.2
COORDINATES: similar to AA sequence:RefSeq:WP_007302170.1
GO:0004298 - threonine-type endopeptidase activity [Evidence IEA]
GO:0051603 - proteolysis involved in protein catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00219.1
COORDINATES: similar to AA sequence:RefSeq:WP_007115517.1
GO:0000902 - cell morphogenesis [Evidence IEA]; GO:0008360 - regulation of cell shape [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018287218.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0003937 - IMP cyclohydrolase activity [Evidence IEA]; GO:0004643 - phosphoribosylaminoimidazolecarboxamide formyltransferase activity [Evidence IEA]
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
COORDINATES: protein motif:HMM:TIGR02063.1
GO:0008997 - ribonuclease R activity [Evidence IEA]
translocation/assembly module TamB domain-containing protein
COORDINATES: protein motif:HMM:TIGR01357.1
GO:0003856 - 3-dehydroquinate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012417.2
COORDINATES: protein motif:HMM:NF041414.1
ArsI/CadI family heavy metal resistance metalloenzyme
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF020933.2
DNA double-strand break repair nuclease NurA
COORDINATES: protein motif:HMM:NF013200.2
electron transfer flavoprotein subunit beta/FixA family protein
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: protein motif:HMM:NF016840.2
COORDINATES: protein motif:HMM:NF021256.2
COORDINATES: protein motif:HMM:NF012339.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012472.2
COORDINATES: protein motif:HMM:NF014044.2
COORDINATES: protein motif:HMM:TIGR00048.1
GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0031167 - rRNA methylation [Evidence IEA]
23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
COORDINATES: protein motif:HMM:TIGR01473.1
GO:0008495 - protoheme IX farnesyltransferase activity [Evidence IEA]
GO:0006783 - heme biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014665.2
COORDINATES: protein motif:HMM:TIGR01326.1
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
COORDINATES: protein motif:HMM:NF003776.0
COORDINATES: protein motif:HMM:TIGR01129.1
GO:0031522 - cell envelope Sec protein transport complex [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00966.2
COORDINATES: protein motif:HMM:NF002223.0
GO:0004019 - adenylosuccinate synthase activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014003.2
COORDINATES: protein motif:HMM:TIGR00252.1
GO:0004518 - nuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF008629.1
cleaves DNA at apurinic or apyrimidinic sites; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019606.2
NTP transferase domain-containing protein
COORDINATES: protein motif:HMM:TIGR00357.1
GO:0033743 - peptide-methionine (R)-S-oxide reductase activity [Evidence IEA]
peptide-methionine (R)-S-oxide reductase MsrB
COORDINATES: protein motif:HMM:TIGR03562.1
GO:0004601 - peroxidase activity [Evidence IEA]; GO:0051920 - peroxiredoxin activity [Evidence IEA]
GO:0006972 - hyperosmotic response [Evidence IEA]; GO:0033194 - response to hydroperoxide [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: protein motif:HMM:NF016974.2
aspartyl/asparaginyl beta-hydroxylase domain-containing protein
COORDINATES: protein motif:HMM:NF016125.2
GO:0004411 - homogentisate 1,2-dioxygenase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006570 - tyrosine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01263.1
GO:0003868 - 4-hydroxyphenylpyruvate dioxygenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019342.2
COORDINATES: similar to AA sequence:RefSeq:WP_011967356.1
GO:0030612 - arsenate reductase (thioredoxin) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006133.0
COORDINATES: protein motif:HMM:NF012759.2
GO:0000036 - acyl carrier activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01733.1
amino acid adenylation domain-containing protein
COORDINATES: protein motif:HMM:NF020133.2
COORDINATES: protein motif:HMM:NF014056.2
GO:0008934 - inositol monophosphate 1-phosphatase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006020 - inositol metabolic process [Evidence IEA]; GO:0046855 - inositol phosphate dephosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF019887.2
COORDINATES: protein motif:HMM:TIGR01486.1
COORDINATES: protein motif:HMM:TIGR02460.1
GO:0050504 - mannosyl-3-phosphoglycerate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00186.1
GO:0008173 - RNA methyltransferase activity [Evidence IEA]
GO:0009451 - RNA modification [Evidence IEA]
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB
COORDINATES: protein motif:HMM:NF015510.2
outer membrane lipoprotein carrier protein LolA
COORDINATES: protein motif:HMM:TIGR02258.1
GO:0008664 - 2'-5'-RNA ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024106.2
COORDINATES: protein motif:HMM:TIGR00007.1
GO:0003949 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase activity [Evidence IEA]
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase
COORDINATES: protein motif:HMM:TIGR00112.1
GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001100.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004825 - methionine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013859272.1
COORDINATES: protein motif:HMM:TIGR01350.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01063.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02945.1
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
SUF system Fe-S cluster assembly protein
COORDINATES: protein motif:HMM:NF014688.2
COORDINATES: protein motif:HMM:TIGR01979.1
GO:0031071 - cysteine desulfurase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0006534 - cysteine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01981.1
COORDINATES: similar to AA sequence:RefSeq:WP_012726854.1
COORDINATES: protein motif:HMM:NF008773.0
COORDINATES: similar to AA sequence:RefSeq:WP_008632889.1
tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB
COORDINATES: protein motif:HMM:NF003678.0
GO:0004609 - phosphatidylserine decarboxylase activity [Evidence IEA]
phosphatidylserine decarboxylase family protein
COORDINATES: protein motif:HMM:TIGR00473.1
GO:0003882 - CDP-diacylglycerol-serine O-phosphatidyltransferase activity [Evidence IEA]
CDP-diacylglycerol--serine O-phosphatidyltransferase
COORDINATES: protein motif:HMM:NF004630.0
phosphoribosylformylglycinamidine synthase subunit PurS
COORDINATES: protein motif:HMM:NF019323.2
COORDINATES: protein motif:HMM:NF028004.2
GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012709.2
GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018036038.1
GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
GO:0042773 - ATP synthesis coupled electron transport [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoK
COORDINATES: protein motif:HMM:TIGR01974.1
GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01972.1
COORDINATES: protein motif:HMM:NF028290.2
COORDINATES: protein motif:HMM:NF002017.0
GO:0008124 - 4-alpha-hydroxytetrahydrobiopterin dehydratase activity [Evidence IEA]
GO:0006729 - tetrahydrobiopterin biosynthetic process [Evidence IEA]
4a-hydroxytetrahydrobiopterin dehydratase
COORDINATES: protein motif:HMM:TIGR01770.1
GO:0050136 - NADH dehydrogenase (quinone) activity [Evidence IEA]; GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]; GO:0016655 - oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002387688.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004784 - superoxide dismutase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006186.0
GO:0008935 - 1,4-dihydroxy-2-naphthoyl-CoA synthase activity [Evidence IEA]
GO:0009234 - menaquinone biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF021445.2
COORDINATES: protein motif:HMM:TIGR03319.1
COORDINATES: protein motif:HMM:NF017016.2
GO:0000917 - division septum assembly [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00472.1
GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IEA]
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]
GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00468.1
phenylalanine--tRNA ligase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_004192938.1
COORDINATES: similar to AA sequence:RefSeq:WP_005410436.1
COORDINATES: protein motif:HMM:TIGR00168.2
carboxyl transferase domain-containing protein
COORDINATES: protein motif:HMM:NF025024.2
COORDINATES: protein motif:HMM:NF013219.2
COORDINATES: protein motif:HMM:NF013648.2
COORDINATES: protein motif:HMM:TIGR00147.1
GO:0001727 - lipid kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00126.1
GO:0004139 - deoxyribose-phosphate aldolase activity [Evidence IEA]
GO:0009264 - deoxyribonucleotide catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF011635.0
GO:0004096 - catalase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: protein motif:HMM:NF012246.2
GO:0000287 - magnesium ion binding [Evidence IEA]
RuBisCO large subunit C-terminal-like domain-containing protein
COORDINATES: protein motif:HMM:TIGR01391.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
COORDINATES: protein motif:HMM:NF018508.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA]; GO:0015662 - P-type ion transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF039309.1
GO:0008465 - glycerate dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF040164.1
COORDINATES: protein motif:HMM:NF027349.2
COORDINATES: protein motif:HMM:NF007032.0
GO:0015079 - potassium ion transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00836.1
COORDINATES: similar to AA sequence:RefSeq:WP_011140150.1
COORDINATES: protein motif:HMM:NF021230.2
COORDINATES: protein motif:HMM:TIGR00435.1
GO:0004817 - cysteine-tRNA ligase activity [Evidence IEA]
GO:0006423 - cysteinyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013183.2
molybdenum cofactor biosynthesis protein B
COORDINATES: protein motif:HMM:NF013932.2
membrane protein insertion efficiency factor YidD
COORDINATES: protein motif:HMM:NF016693.2
COORDINATES: protein motif:HMM:NF013718.2
COORDINATES: protein motif:HMM:NF033520.1
COORDINATES: similar to AA sequence:RefSeq:WP_012536323.1
GO:0008251 - tRNA-specific adenosine deaminase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0002100 - tRNA wobble adenosine to inosine editing [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00071.1
COORDINATES: protein motif:HMM:NF013375.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0004765 - shikimate kinase activity [Evidence IEA]
GO:0008652 - amino acid biosynthetic process [Evidence IEA]; GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014794.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03710.1
2-oxoacid:acceptor oxidoreductase subunit alpha
COORDINATES: protein motif:HMM:TIGR00259.1
COORDINATES: protein motif:HMM:NF003967.1
COORDINATES: protein motif:HMM:NF002496.0
GO:0004799 - thymidylate synthase activity [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012413.2
GO:0004146 - dihydrofolate reductase activity [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013087.2
GO:0008171 - O-methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF040964.1
GO:0005856 - cytoskeleton [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012212527.1
GO:0015370 - solute:sodium symporter activity [Evidence IEA]
Members of the Solute:Sodium Symporter (SSS), TC 2.A.21 as described in tcdb.org, catalyze solute:Na+ symport. Known solutes for members of the family include sugars, amino acids, nucleosides, inositols, vitamins, urea or anions, depending on the system.; Members of the Solute:Sodium Symporter (SSS), TC 2.A.21 as described in tcdb.org, catalyze solute:Na+ symport. Known solutes for members of the family include sugars, amino acids, nucleosides, inositols, vitamins, urea or anions, depending on the system; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024488.2
COORDINATES: protein motif:HMM:NF040501.1
arsenic resistance N-acetyltransferase ArsN2
COORDINATES: protein motif:HMM:NF014038.2
COORDINATES: protein motif:HMM:NF025019.2
COORDINATES: protein motif:HMM:NF016274.2
COORDINATES: protein motif:HMM:NF003763.0
GO:0008792 - arginine decarboxylase activity [Evidence IEA]
GO:0006527 - arginine catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014027.2
GO:0008612 - peptidyl-lysine modification to peptidyl-hypusine [Evidence IEA]
COORDINATES: protein motif:HMM:NF006006.0
COORDINATES: similar to AA sequence:RefSeq:WP_004111744.1
COORDINATES: protein motif:HMM:NF013757.2
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF009386.0
COORDINATES: protein motif:HMM:NF039236.1
COORDINATES: protein motif:HMM:NF013847.2
cobalamin-independent methionine synthase II family protein
GO:0016901 - oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor [Evidence IEA]; GO:0070968 - pyrroloquinoline quinone binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF021596.2
formylglycine-generating enzyme family protein
COORDINATES: protein motif:HMM:NF013080.2
sugar ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF028476.2
COORDINATES: protein motif:HMM:NF012457.2
GO:0008422 - beta-glucosidase activity [Evidence IEA]
GO:0030245 - cellulose catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00113.1
GO:0016853 - isomerase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
COORDINATES: protein motif:HMM:NF013308.2
GO:0050518 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity [Evidence IEA]
GO:0019288 - isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [Evidence IEA]
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
COORDINATES: protein motif:HMM:NF014588.2
GO:0008685 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity [Evidence IEA]
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
COORDINATES: protein motif:HMM:NF020893.2
COORDINATES: protein motif:HMM:TIGR00964.1
COORDINATES: protein motif:HMM:TIGR00922.1
transcription termination/antitermination protein NusG
COORDINATES: similar to AA sequence:RefSeq:WP_013028894.1
COORDINATES: similar to AA sequence:RefSeq:WP_008810408.1
COORDINATES: protein motif:HMM:NF000955.1
GO:0015934 - large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005122872.1
COORDINATES: protein motif:HMM:TIGR02013.1
GO:0000345 - cytosolic DNA-directed RNA polymerase complex [Evidence IEA]
DNA-directed RNA polymerase subunit beta
COORDINATES: protein motif:HMM:TIGR02386.1
DNA-directed RNA polymerase subunit beta'
COORDINATES: protein motif:HMM:NF024189.2
COORDINATES: protein motif:HMM:NF025430.2
bifunctional serine/threonine-protein kinase/formylglycine-generating enzyme family protein
COORDINATES: protein motif:HMM:NF033206.1
COORDINATES: protein motif:HMM:NF018269.2
COORDINATES: protein motif:HMM:NF012575.2
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF020032.2
COORDINATES: protein motif:HMM:TIGR00835.1
GO:0005416 - amino acid:monoatomic cation symporter activity [Evidence IEA]
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016292883.1
GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013234.2
phosphomannose isomerase type II C-terminal cupin domain
COORDINATES: protein motif:HMM:NF014017.2
COORDINATES: protein motif:HMM:TIGR00374.1
COORDINATES: protein motif:HMM:NF014826.2
COORDINATES: protein motif:HMM:NF000812.0
GO:0009349 - riboflavin synthase complex [Evidence IEA]
GO:0000906 - 6,7-dimethyl-8-ribityllumazine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025870.2
COORDINATES: protein motif:HMM:NF024779.2
COORDINATES: protein motif:HMM:TIGR01083.1
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01307.1
GO:0046537 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity [Evidence IEA]
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
COORDINATES: protein motif:HMM:TIGR00705.1
GO:0006508 - proteolysis [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00331.1
GO:0009408 - response to heat [Evidence IEA]
heat-inducible transcriptional repressor HrcA
COORDINATES: protein motif:HMM:NF008035.0
GO:0006457 - protein folding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02757.1
COORDINATES: protein motif:HMM:NF005454.0
threo-3-hydroxy-L-aspartate ammonia-lyase
COORDINATES: protein motif:HMM:NF025601.2
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:TIGR01420.1
GO:0043107 - type IV pilus-dependent motility [Evidence IEA]
COORDINATES: protein motif:HMM:NF012485.2
type II and III secretion system protein
COORDINATES: protein motif:HMM:TIGR00135.1
GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex [Evidence IEA]
GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC
COORDINATES: protein motif:HMM:NF021126.2
COORDINATES: similar to AA sequence:RefSeq:WP_001183618.1
ethanolamine utilization microcompartment protein EutM
COORDINATES: similar to AA sequence:RefSeq:WP_016290202.1
COORDINATES: protein motif:HMM:TIGR00543.1
GO:0008909 - isochorismate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00173.1
GO:0070204 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylic-acid synthase activity [Evidence IEA]
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase
COORDINATES: protein motif:HMM:NF004751.0
GO:0046428 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity [Evidence IEA]
1,4-dihydroxy-2-naphthoate polyprenyltransferase
COORDINATES: protein motif:HMM:TIGR01927.1
COORDINATES: protein motif:HMM:TIGR01923.1
GO:0008756 - o-succinylbenzoate-CoA ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024812.2
COORDINATES: protein motif:HMM:NF013868.2
This anti-anti-sigma factor, or anti-sigma factor antagonist, belongs to a family that includes characterized members SpoIIAA, RsbV, RsfA, and RsfB; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF006416.0
GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004326.0
GO:0046523 - S-methyl-5-thioribose-1-phosphate isomerase activity [Evidence IEA]
GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]
S-methyl-5-thioribose-1-phosphate isomerase
COORDINATES: protein motif:HMM:TIGR03025.1
GO:0042834 - peptidoglycan binding [Evidence IEA]; GO:0071972 - peptidoglycan L,D-transpeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006960.0
COORDINATES: protein motif:HMM:NF004012.0
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB
COORDINATES: similar to AA sequence:RefSeq:WP_014029893.1
GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]
GO:0004560 - alpha-L-fucosidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001208.0
GO:0003987 - acetate-CoA ligase activity [Evidence IEA]
GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]
COORDINATES: protein motif:HMM:NF006820.0
GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF013986.2
BadF/BadG/BcrA/BcrD ATPase family protein
COORDINATES: protein motif:HMM:NF006375.0
GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0015031 - protein transport [Evidence IEA]
isocitrate/isopropylmalate dehydrogenase family protein
COORDINATES: protein motif:HMM:NF025491.2
COORDINATES: protein motif:HMM:NF011291.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004819 - glutamine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006425 - glutaminyl-tRNA aminoacylation [Evidence IEA]
glutamine--tRNA ligase/YqeY domain fusion protein
COORDINATES: protein motif:HMM:NF020872.2
COORDINATES: protein motif:HMM:TIGR00464.1
GO:0009332 - glutamate-tRNA ligase complex [Evidence IEA]
GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006958.0
methylmalonyl Co-A mutase-associated GTPase MeaB
COORDINATES: protein motif:HMM:NF006944.0
GO:0031419 - cobalamin binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004494 - methylmalonyl-CoA mutase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00017.1
GO:0004127 - cytidylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004953.0
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF025569.2
COORDINATES: protein motif:HMM:NF009251.0
GO:0004639 - phosphoribosylaminoimidazolesuccinocarboxamide synthase activity [Evidence IEA]
phosphoribosylaminoimidazolesuccinocarboxamide synthase
COORDINATES: similar to AA sequence:RefSeq:WP_016292962.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: protein motif:HMM:NF006873.0
GO:0008760 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity [Evidence IEA]
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
COORDINATES: protein motif:HMM:TIGR04282.1
TIGR04282 family arsenosugar biosynthesis glycosyltransferase
COORDINATES: protein motif:HMM:NF006778.0
GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IEA]
GO:0016846 - carbon-sulfur lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019343 - cysteine biosynthetic process via cystathionine [Evidence IEA]
PLP-dependent aspartate aminotransferase family protein
COORDINATES: nucleotide motif:Rfam:14.4:RF00162
SAM riboswitch class I; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:TIGR00191.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004413 - homoserine kinase activity [Evidence IEA]
GO:0006566 - threonine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00260.1
GO:0004795 - threonine synthase activity [Evidence IEA]
GO:0009088 - threonine biosynthetic process [Evidence IEA]
squalene/phytoene synthase family protein
COORDINATES: protein motif:HMM:TIGR00878.1
GO:0004641 - phosphoribosylformylglycinamidine cyclo-ligase activity [Evidence IEA]
phosphoribosylformylglycinamidine cyclo-ligase
COORDINATES: protein motif:HMM:TIGR00023.1
GO:0008374 - O-acyltransferase activity [Evidence IEA]
GO:0006654 - phosphatidic acid biosynthetic process [Evidence IEA]
glycerol-3-phosphate 1-O-acyltransferase PlsY
COORDINATES: protein motif:HMM:NF000942.0
GO:0009331 - glycerol-3-phosphate dehydrogenase complex [Evidence IEA]
GO:0047952 - glycerol-3-phosphate dehydrogenase [NAD(P)+] activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
GO:0046168 - glycerol-3-phosphate catabolic process [Evidence IEA]
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
COORDINATES: protein motif:HMM:NF004044.1
GO:0009330 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF004189.0
COORDINATES: protein motif:HMM:NF025946.2
COORDINATES: protein motif:HMM:NF024784.2
HNH endonuclease signature motif containing protein
COORDINATES: protein motif:HMM:TIGR00174.1
GO:0052381 - tRNA dimethylallyltransferase activity [Evidence IEA]
tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
COORDINATES: protein motif:HMM:TIGR00525.1
GO:0004150 - dihydroneopterin aldolase activity [Evidence IEA]
GO:0006760 - folic acid-containing compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024915.2
COORDINATES: protein motif:HMM:NF012363.2
COORDINATES: protein motif:HMM:TIGR00368.1
YifB family Mg chelatase-like AAA ATPase
COORDINATES: protein motif:HMM:NF024211.2
COORDINATES: protein motif:HMM:NF039482.1
GO:0003951 - NAD+ kinase activity [Evidence IEA]
GO:0006741 - NADP biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF039329.1