Atlantibacter subterranea strain LH84-a plasmid pLH84-a-B, complete sequence.
type: Entry
definition: Atlantibacter subterranea strain LH84-a plasmid pLH84-a-B, complete sequence.
sequence version: NZ_CP100496.1
sequence date: 2023-07-22
sequence: sequence
division: CON
label: NZ_CP100496.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN29499320
keyword: RefSeq
source: Atlantibacter subterranea
organism: Atlantibacter subterranea
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Atlantibacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP100496.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.5.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100x, 100x\nSequencing Technology :: Illumina MiniSeq, Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/22/2023 02:37:31\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,551\nCDSs (total) :: 4,436\nGenes (coding) :: 4,382\nCDSs (with protein) :: 4,382\nGenes (RNA) :: 115\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 84\nncRNAs :: 9\nPseudo Genes (total) :: 54\nCDSs (without protein) :: 54\nPseudo Genes (ambiguous residues) :: 0 of 54\nPseudo Genes (frameshifted) :: 22 of 54\nPseudo Genes (incomplete) :: 38 of 54\nPseudo Genes (internal stop) :: 9 of 54\nPseudo Genes (multiple problems) :: 12 of 54\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 19064
topology: circular
so has quality: SO_0000988
location: 1..19064
location: region:1-19064:1
RO_0002162: 255519

NZ_CP100496
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN29499320
type: BioSample
SIO_000068: biosample

1
title: ESBL-producing Enterobacteriaceae from poultry
author: Biggel, M.
journal: Unpublished

2
title: Direct Submission
author: Biggel, M.
journal: Submitted (05-JUL-2022) Institute for Food Safety and Hygiene, University of Zurich, Winterthurerstrasse 272, Zurich 8057, Switzerland

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19064:1
position: 19064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19064:1:source
so part of: sequence
organism: Atlantibacter subterranea
mol type: genomic DNA
strain: LH84-a
isolation source: pooled poultry feces
host: Gallus gallus domesticus
plasmid: pLH84-a-B
country: Switzerland
collection date: 2022
collected by: Institute for Food Safety and Hygiene, University of Zurich

255519
type: Taxonomy
SIO_000068: taxonomy

NLZ15_RS22640
type: Gene
subclass of: SO_0000704
RO_0002162: 255519
locus tag: NLZ15_RS22640
old locus tag: NLZ15_22640
so part of: sequence
location: 301..519
location: region:301-519:1
so has part: feature:301-519:1:exon
subclass of: SO_0000010

position:301:1
position: 301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:519:1
position: 519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:301-519:1:exon

NLZ15_RS22640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 255519
locus tag: NLZ15_RS22640
old locus tag: NLZ15_22640
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKASVSKLAAGDRFLDTACGTFRRVERVYPDEGALWAVEVAGRDLPFFFLADALVTIDKRTARRLYGAHSVN
SIO_010081: NLZ15_RS22640
subclass of: SO_0000673
so part of: NLZ15_RS22640
location: 301..519
location: region:301-519:1
so has part: feature:301-519:1:exon

WP_254489130.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:301-519:1:exon

NLZ15_RS22645
type: Gene
subclass of: SO_0000704
RO_0002162: 255519
locus tag: NLZ15_RS22645
old locus tag: NLZ15_22645
so part of: sequence
location: 598..1194
location: region:598-1194:1
so has part: feature:598-1194:1:exon
subclass of: SO_0000010

position:598:1
position: 598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1194:1
position: 1194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:598-1194:1:exon

NLZ15_RS22645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 255519
locus tag: NLZ15_RS22645
old locus tag: NLZ15_22645
inference: COORDINATES: protein motif:HMM:NF013793.2
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MGIVSVFSTKGGVGKSLNALNLAHWLNPTQLIDSDVGSGLSDLAGLGDRFKPVLVRTLAQAKAALKGSGLILADCGGFDSDVNRYILAMSDVVLVPSGVTPSDQFGLLATSKVLTSISKTTGRDVHGHIVINDVNPRQSDFSVLQDIVEATGNLSIIKPVIPHAAAINNASLKGDAVTSGEIAAKFSALASNVLALVP
SIO_010081: NLZ15_RS22645
subclass of: SO_0000673
so part of: NLZ15_RS22645
location: 598..1194
location: region:598-1194:1
so has part: feature:598-1194:1:exon

WP_254489132.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:598-1194:1:exon

NLZ15_RS22650
type: Gene
subclass of: SO_0000704
RO_0002162: 255519
locus tag: NLZ15_RS22650
old locus tag: NLZ15_22650
so part of: sequence
location: 1237..1455
location: region:1237-1455:1
so has part: feature:1237-1455:1:exon
subclass of: SO_0000010

position:1237:1
position: 1237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1455:1
position: 1455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1237-1455:1:exon

NLZ15_RS22650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 255519
locus tag: NLZ15_RS22650
old locus tag: NLZ15_22650
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKSVLAHKAAAGAPLQSPAAEKATFDTSLKGVPVSLKQRWQDLKAQGKVYGSFTAFLLESAAIRLDEIENR
SIO_010081: NLZ15_RS22650
subclass of: SO_0000673
so part of: NLZ15_RS22650
location: 1237..1455
location: region:1237-1455:1
so has part: feature:1237-1455:1:exon

WP_228337430.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1237-1455:1:exon

NLZ15_RS22655
type: Gene
subclass of: SO_0000704
RO_0002162: 255519
locus tag: NLZ15_RS22655
old locus tag: NLZ15_22655
so part of: sequence
location: complement(2109..2324)
location: region:2109-2324:-1
so has part: feature:2109-2324:-1:exon
subclass of: SO_0000010

position:2109:-1
position: 2109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2324:-1
position: 2324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2109-2324:-1:exon

NLZ15_RS22655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 255519
locus tag: NLZ15_RS22655
old locus tag: NLZ15_22655
inference: COORDINATES: protein motif:HMM:NF024139.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MTNQPARLYFTPQQVSEHFGGAVSPRTLANWRSQSIGPAYVKLGGKVLYSAASISEWEKKRTVNGTGQYRA
SIO_010081: NLZ15_RS22655
subclass of: SO_0000673
so part of: NLZ15_RS22655
location: complement(2109..2324)
location: region:2109-2324:-1
so has part: feature:2109-2324:-1:exon

WP_254489134.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2109-2324:-1:exon

NLZ15_RS22660
type: Gene
subclass of: SO_0000704
RO_0002162: 255519
locus tag: NLZ15_RS22660
old locus tag: NLZ15_22660
so part of: sequence
location: 2694..2915
location: region:2694-2915:1
so has part: feature:2694-2915:1:exon
subclass of: SO_0000010

position:2694:1
position: 2694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2915:1
position: 2915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2694-2915:1:exon

NLZ15_RS22660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 255519
locus tag: NLZ15_RS22660
old locus tag: NLZ15_22660
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020342391.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MPEKKFLTPRQLTERWGGEIHERTLANWRASSRGPRYLRIGGKILYDLDDVEAYESDRKVQGTIEYAKWKDGD
SIO_010081: NLZ15_RS22660
subclass of: SO_0000673
so part of: NLZ15_RS22660
location: 2694..2915
location: region:2694-2915:1
so has part: feature:2694-2915:1:exon

WP_254489136.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2694-2915:1:exon

NLZ15_RS22665
type: Gene
subclass of: SO_0000704
RO_0002162: 255519
locus tag: NLZ15_RS22665
old locus tag: NLZ15_22665
so part of: sequence
location: complement(2912..4120)
location: region:2912-4120:-1
so has part: feature:2912-4120:-1:exon
subclass of: SO_0000010

position:2912:-1
position: 2912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4120:-1
position: 4120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2912-4120:-1:exon

NLZ15_RS22665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 255519
locus tag: NLZ15_RS22665
old locus tag: NLZ15_22665
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020832136.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MALAKLTDVALRKAKPSAKDYRLTDGGGLALLVRSNGARLWQYRFRHNGREQIHSLGAYPEITLAAAREEHRKARALVSAGVNPVANRREERREAKQRELVDKAGSFDAVVSAWRELTDPNLAPLSIRQREREVQKYLLPAFKGRSVGSITRVELAALLKKVEARAPEVARNLRNYLTQIFDHAADHGLVDANPVPPRRILSKRASTHHRPLPFDQLHQFISDIQGCTAEPATKAAMLLVVMTACRKNEAAFAVWTEIDLDAALWTIPAHRMKARREHIIPLPRQAVKLLQELRSTAISEAVFPSRSRAGGTMADRTLNALMERTGYAGISVHGFRSLFSTWANENGENPDVIERCLAHVHQNATRRAYNHAQHIAERRDLLQRWADLLLPDGTAQKLAEAA
SIO_010081: NLZ15_RS22665
subclass of: SO_0000673
so part of: NLZ15_RS22665
location: complement(2912..4120)
location: region:2912-4120:-1
so has part: feature:2912-4120:-1:exon

WP_254489138.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2912-4120:-1:exon

NLZ15_RS22670
type: Gene
subclass of: SO_0000704
RO_0002162: 255519
locus tag: NLZ15_RS22670
old locus tag: NLZ15_22670
so part of: sequence
location: 4999..5190
location: region:4999-5190:1
so has part: feature:4999-5190:1:exon
subclass of: SO_0000010

position:4999:1
position: 4999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5190:1
position: 5190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4999-5190:1:exon

NLZ15_RS22670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 255519
locus tag: NLZ15_RS22670
old locus tag: NLZ15_22670
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MREYLLVRDMLELLRCSKATLYREVQAGRIPRPFRLSAGKSAWHKDDVKEVIEQRRMAANAGQ
SIO_010081: NLZ15_RS22670
subclass of: SO_0000673
so part of: NLZ15_RS22670
location: 4999..5190
location: region:4999-5190:1
so has part: feature:4999-5190:1:exon

WP_254489140.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4999-5190:1:exon

NLZ15_RS22675
type: Gene
subclass of: SO_0000704
RO_0002162: 255519
locus tag: NLZ15_RS22675
old locus tag: NLZ15_22675
so part of: sequence
location: 5327..5755
location: region:5327-5755:1
so has part: feature:5327-5755:1:exon
subclass of: SO_0000010

position:5327:1
position: 5327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5755:1
position: 5755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5327-5755:1:exon

NLZ15_RS22675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 255519
locus tag: NLZ15_RS22675
old locus tag: NLZ15_22675
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKRATSLNALLRDKNTWFFELDALREQISDRDFIQNVAESLNCDHIERTTPYITVGSRNFASGCLKEADYNNPSEHYRRFFFAKKGDFIPVDGYDRLIVVSSLDLQEIYVQRGGRGRQKLVNIADLVRILANLGETGEVKL
SIO_010081: NLZ15_RS22675
subclass of: SO_0000673
so part of: NLZ15_RS22675
location: 5327..5755
location: region:5327-5755:1
so has part: feature:5327-5755:1:exon

WP_254489142.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5327-5755:1:exon

NLZ15_RS22680
type: Gene
subclass of: SO_0000704
RO_0002162: 255519
locus tag: NLZ15_RS22680
old locus tag: NLZ15_22680
so part of: sequence
location: 5752..8544
location: region:5752-8544:1
so has part: feature:5752-8544:1:exon
subclass of: SO_0000010

position:5752:1
position: 5752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8544:1
position: 8544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5752-8544:1:exon

NLZ15_RS22680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 255519
locus tag: NLZ15_RS22680
old locus tag: NLZ15_22680
inference: COORDINATES: protein motif:HMM:NF013930.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003896 - DNA primase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CHC2 zinc finger domain-containing protein
translation: MSHLDLQQNKGRAKDDIVGTISRYIKLTKKGDEFVACCPFHEEDTPSFTVTPATGYYYCFGCGEGGDAIDFVSKHEGIGFAEAVNHIVGNYAGETSPVKRQSIKQPKVMDVWEQIVPVPAEAPSPNFTFNRMTATRTWKYRDSNGDRIGYVCRFDKPEGGKEVVPLTYWVNRETGEMKWRYASFSKPRPMYGLDKLASKPDTQVLIVEGEKAADAAQKLFGDRLVVVSWPGGGKAVKFVDWSPLQSRKVGLWPDADAKHYPEKHEKAGELMPFTEQPGTVAMMDIAEALTGVAASVKFIMPPEGVPDGWDLADELPEGFNLMAHAKSAAKTYDEFLSEYAPAPNAEPAREQKVVDTQEPQPAAEPELVEEPETAPPAAEQQAPKVASANNNEPFYPLGYNRGEYFYLVSGTQQITALTATQHSKSNLLQLAPLSYWVENYPSKSGAAWDDAADHLLRRCEARGIFSRDVVRGRGAWIDNGRTVFHFGSHLWVDGQEMATTSIKSRYVYEMDRSLAAPADKALTDAEGRELLKTASMFRWTKPANAALLAGFVALAPLSGALRWRPHIWITGGAGCGKSTALNDYVHPLMGGMDVFAQGNSTEAGIRQRLRCDALPVLFDESEQNSEREVMRVQNVLSLIRQASSESAAKTLKGTASGDAMEFIIRSMFCLSSIQVGINSQADRDRLTILALKPREGNPTTEKDWEALKDRLYSIQRDSELPSRLFRRGLDLLKITQENINTFVDVAATKFGNRREGDQFGTLLAGCWSLSSSELATPEQAKAMIDGYDWEELRENNQVSESNLVLNAILSASLRLDGGGVATVYECVCRAAGRSVDGVEMAVSYAKKALSHANIRVEGNEIWLANNSTQIPKLLAGTPYGADWRGQLKRVEHVTTSKNPKKFNGVNSQYVIVPISLLDDTPGQDHDESPI
SIO_010081: NLZ15_RS22680
subclass of: SO_0000673
so part of: NLZ15_RS22680
location: 5752..8544
location: region:5752-8544:1
so has part: feature:5752-8544:1:exon

WP_254489144.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5752-8544:1:exon

NLZ15_RS22685
type: Gene
subclass of: SO_0000704
RO_0002162: 255519
locus tag: NLZ15_RS22685
old locus tag: NLZ15_22685
so part of: sequence
location: 9114..9602
location: region:9114-9602:1
so has part: feature:9114-9602:1:exon
subclass of: SO_0000010

position:9114:1
position: 9114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9602:1
position: 9602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9114-9602:1:exon

NLZ15_RS22685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 255519
locus tag: NLZ15_RS22685
old locus tag: NLZ15_22685
inference: COORDINATES: protein motif:HMM:NF022133.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage terminase small subunit-related protein
translation: MANDKIRARDTARALYESGRMTIRQVAAEIGVSSRTVERWSATDGWARVKNTPELSERAHRVASRLAEIPEDAKPEERRKVVDAVTEQQAVDERAALLVRHRREWQYPRALLVEAIKGRDTEKAKIAKAAAETTRIIQSGERLAWGLDTDAGTKVQVVIERE
SIO_010081: NLZ15_RS22685
subclass of: SO_0000673
so part of: NLZ15_RS22685
location: 9114..9602
location: region:9114-9602:1
so has part: feature:9114-9602:1:exon

WP_254489146.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9114-9602:1:exon

NLZ15_RS22690
type: Gene
subclass of: SO_0000704
RO_0002162: 255519
locus tag: NLZ15_RS22690
old locus tag: NLZ15_22690
so part of: sequence
location: 9670..9876
location: region:9670-9876:1
so has part: feature:9670-9876:1:exon
subclass of: SO_0000010

position:9670:1
position: 9670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9876:1
position: 9876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9670-9876:1:exon

NLZ15_RS22690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 255519
locus tag: NLZ15_RS22690
old locus tag: NLZ15_22690
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKVSASMLALVAAIGASEANGYVGYCYSIIDPDQRAMCRAKEHHEPGYCYSIQQSDLRAQCLAETPRK
SIO_010081: NLZ15_RS22690
subclass of: SO_0000673
so part of: NLZ15_RS22690
location: 9670..9876
location: region:9670-9876:1
so has part: feature:9670-9876:1:exon

WP_254489108.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9670-9876:1:exon

NLZ15_RS22695
type: Gene
subclass of: SO_0000704
RO_0002162: 255519
locus tag: NLZ15_RS22695
old locus tag: NLZ15_22695
so part of: sequence
location: complement(9991..10596)
location: region:9991-10596:-1
so has part: feature:9991-10596:-1:exon
subclass of: SO_0000010

position:9991:-1
position: 9991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10596:-1
position: 10596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9991-10596:-1:exon

NLZ15_RS22695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 255519
locus tag: NLZ15_RS22695
old locus tag: NLZ15_22695
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDWLPSLLPITVVAAIALFALKEVLEFIRRRSADRRKSHAFRTLLARECEVNHWAHWRLQETLREIHEDHEKGVKATYTATELPGGDALWRRTDQGGGYSGGGLPDARTDLISKIMVDVATMDKKLFTPLENAYDSLIEMRHIRASLLRFVSSKDEEDQMHLQGFPEYGLSELEGVKEDLDKLYLECTGRSIDRTDMRVRG
SIO_010081: NLZ15_RS22695
subclass of: SO_0000673
so part of: NLZ15_RS22695
location: complement(9991..10596)
location: region:9991-10596:-1
so has part: feature:9991-10596:-1:exon

WP_254489110.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9991-10596:-1:exon

NLZ15_RS22700
type: Gene
subclass of: SO_0000704
RO_0002162: 255519
locus tag: NLZ15_RS22700
old locus tag: NLZ15_22700
so part of: sequence
location: 10804..11424
location: region:10804-11424:1
so has part: feature:10804-11424:1:exon
subclass of: SO_0000010

position:10804:1
position: 10804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11424:1
position: 11424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10804-11424:1:exon

NLZ15_RS22700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 255519
locus tag: NLZ15_RS22700
old locus tag: NLZ15_22700
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005298703.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MFIRAYLRASTKEQDAERAREMLDKFASEHGKVIASRYIENESGARADRPALLRLLADAQPGDVLLVESIDRLSRLPEDDWRKLKAAIDGKGLRIVAIDLPTSHQGMKEIDSGDEFTGRMLSAINGMLVDMMAAIARKDYEQRRQRQAQGIEKAKREGAYTGRKADPDLHRRVRDALEAGLGVRAAARVVGCSTNTVTRIRDELVA
SIO_010081: NLZ15_RS22700
subclass of: SO_0000673
so part of: NLZ15_RS22700
location: 10804..11424
location: region:10804-11424:1
so has part: feature:10804-11424:1:exon

WP_254489112.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10804-11424:1:exon

NLZ15_RS22705
type: Gene
subclass of: SO_0000704
RO_0002162: 255519
locus tag: NLZ15_RS22705
old locus tag: NLZ15_22705
so part of: sequence
location: 11813..12655
location: region:11813-12655:1
so has part: feature:11813-12655:1:exon
subclass of: SO_0000010

position:11813:1
position: 11813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12655:1
position: 12655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11813-12655:1:exon

NLZ15_RS22705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 255519
locus tag: NLZ15_RS22705
old locus tag: NLZ15_22705
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: METIEHTIEGSQMKNIHDIEAQLVGARTDLAAALERGDDTRSYRNAVVALDQELAEAQAEKAKAERATQRAEQERLSALATDAVRDAHNSVADAAGDDVVAGIDMPEVTDDPAVADAAERLSAARDRLAREDARYTAAYGEWAKINKRLVDKQRQRDEIVARRASGDERPEDGAELTALNLDMGSLQSMAADRHIAAEQLKPTSARRLVADAEAALKKTQDAALFNLRKARIRALELALIDEHAAAVSDARARGLSEFTSVPMLREMQRIIHRTATWEDR
SIO_010081: NLZ15_RS22705
subclass of: SO_0000673
so part of: NLZ15_RS22705
location: 11813..12655
location: region:11813-12655:1
so has part: feature:11813-12655:1:exon

WP_254489114.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11813-12655:1:exon

NLZ15_RS22710
type: Gene
subclass of: SO_0000704
RO_0002162: 255519
locus tag: NLZ15_RS22710
old locus tag: NLZ15_22710
so part of: sequence
location: 12657..12935
location: region:12657-12935:1
so has part: feature:12657-12935:1:exon
subclass of: SO_0000010

position:12657:1
position: 12657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12935:1
position: 12935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12657-12935:1:exon

NLZ15_RS22710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 255519
locus tag: NLZ15_RS22710
old locus tag: NLZ15_22710
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005298710.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTGQRNAKGQFAPGHAGGPGGARKRKTPEQKLLEAIERDAPGLVERALIVAQTDNAVLAEVIRYLTECLATKNLQAAAELAAMQYTAAGGVH
SIO_010081: NLZ15_RS22710
subclass of: SO_0000673
so part of: NLZ15_RS22710
location: 12657..12935
location: region:12657-12935:1
so has part: feature:12657-12935:1:exon

WP_254489116.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12657-12935:1:exon

NLZ15_RS22715
type: Gene
subclass of: SO_0000704
RO_0002162: 255519
locus tag: NLZ15_RS22715
old locus tag: NLZ15_22715
so part of: sequence
location: 12969..13313
location: region:12969-13313:1
so has part: feature:12969-13313:1:exon
subclass of: SO_0000010

position:12969:1
position: 12969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13313:1
position: 13313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12969-13313:1:exon

NLZ15_RS22715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 255519
locus tag: NLZ15_RS22715
old locus tag: NLZ15_22715
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTNKINKTHAVEDGIIALNGEIAERHRAEARVKDTKKSRGAEDLTDAEDETLAELKARLAERAKSGEYDALAKSLRGTVSNFLRSRKRRGPELMAKSMRHDPRRLVLPKKVRG
SIO_010081: NLZ15_RS22715
subclass of: SO_0000673
so part of: NLZ15_RS22715
location: 12969..13313
location: region:12969-13313:1
so has part: feature:12969-13313:1:exon

WP_254489118.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12969-13313:1:exon

NLZ15_RS22720
type: Gene
subclass of: SO_0000704
RO_0002162: 255519
locus tag: NLZ15_RS22720
old locus tag: NLZ15_22720
so part of: sequence
location: 13320..16085
location: region:13320-16085:1
so has part: feature:13320-16085:1:exon
subclass of: SO_0000010

position:13320:1
position: 13320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16085:1
position: 16085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13320-16085:1:exon

NLZ15_RS22720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 255519
locus tag: NLZ15_RS22720
old locus tag: NLZ15_22720
EC number: 4.2.2.n1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017781120.1
GO function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lytic transglycosylase domain-containing protein
translation: MSIKIPVSAEFDGSELNKQIGQINARLKQMGDAVAKANGQKFEPITLKTKEDLRYFVQQSEKLLKIQGELRNRMQKSGQGNANPFMANWSNMYLNEATRLRRQQEALVFLGASFEDASAPRRPNAPPPPPPINRNPPGGSAGAGGTNPWTQQGTRILQSGLNAAGPVGGVASQAFGTGMVSGFGAGLMGLVGGMAALGVGKLVGAIADKISDAQTEAIASDQLMRRLGGGLGYLSTRNGVRAAAERLGLNYNDAMPLAESMVRLGNLGGDRARDLPEELANAGGLARGFGLDPAAGVGLFGQLRGLNLTRSADDSRRVGMIIGETIAKSDAFAKADEVMEAIAAYATVQTRQSLGVLNLAGYSGQLSAMAGSGIPGLDVAGSASLLSRVNAALSQGGAKGEASQFFTAMVGNRMGLDPVQTQVLREGGAFATNDSMFGPGSMAARFGIRGPGGNRTFLQETLDVIRDKYHSPGFQAMATASHLGISMNQAMALLRIKPNEMGDIQQRMGRIGFDMKNLSADGIADIARINSPGADLNKIGDSFMSRTGKGALSGEEADRLRNAMASGDSEALKDILTELAAQKGQAETEGSKTRDTITGVANRLQDFASKSLPLLNDSRAALLYLAGKQGGGSPADLRMKAIESDHDDRVAAIKGKYDNLLREEGQRLVDARMAGDPTNPASLERSRKLQEESNARYDELVKKRDAELEAETQRWKKSQETERQETINRYSTERPVGASPINHGIVAQNESGNRDYDRAGNIITSSAGAMGRMQTMPGTLRDPGFGVAPARNNTPDEMARVGHDYLDAMYARYGNVDKALAAYNWGPGRVDAAVTRYGDDWFRHAPAETQQYIRKYHRANAAIPARTPAQLPQADTRSSDVNFNVSAQPIEVVVKNDRGEQIAPTQSIQTQVKPAQSWGHR
SIO_010081: NLZ15_RS22720
subclass of: SO_0000673
so part of: NLZ15_RS22720
location: 13320..16085
location: region:13320-16085:1
so has part: feature:13320-16085:1:exon

WP_254489120.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13320-16085:1:exon

NLZ15_RS22725
type: Gene
subclass of: SO_0000704
RO_0002162: 255519
locus tag: NLZ15_RS22725
old locus tag: NLZ15_22725
so part of: sequence
location: 16085..17644
location: region:16085-17644:1
so has part: feature:16085-17644:1:exon
subclass of: SO_0000010

position:17644:1
position: 17644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16085-17644:1:exon

NLZ15_RS22725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 255519
locus tag: NLZ15_RS22725
old locus tag: NLZ15_22725
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPQFKEATPHVSVRLYKTISRKTVDGQAAVSTRYAGKDEYIDLTPFLGDGSSVVTRKSVREPAGGFSITFADKPKASGVSAGVPLPGGSVETVYGLVEPMDVVEIRMWSGIGPKPAVLPIKMRGFVSKIGRSQSMTQDGKPVRAVVVSGQDYGKIWQTYQVLYLSAYDGTDAFLTAFNMWERFGIGAQNTMAAGDFVRAMVEKVLNPHIKGFMPRNSPMPKELKLDVSVRNGVVNNSYQSQQGSVYDVIRTLADVGVWNELYIEDREDGTYVVYRPMPALHVTKPVGAKDRKIQPDAPDPIYVTVADEFMQSINAERSDENVANFFWVNNQRYDLIDDIFRKQAAVVSGDPSVSTREYPNTAVQYYGIRPMYAETQQAANDVSSMTTGLDASTQEQRSGMFTDWLDNRRQIMMAMNRDNVVLEVGTARIKGGLTRPAGKDGKAEHMKAGDYALFRQGNLQFEGYITEITDEFIPFLSYTATIQFERGTGFVERAKMEGGVNSPWLAEQATRSGDQFSTR
SIO_010081: NLZ15_RS22725
subclass of: SO_0000673
so part of: NLZ15_RS22725
location: 16085..17644
location: region:16085-17644:1
so has part: feature:16085-17644:1:exon

WP_254489122.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16085-17644:1:exon

NLZ15_RS22730
type: Gene
subclass of: SO_0000704
RO_0002162: 255519
locus tag: NLZ15_RS22730
old locus tag: NLZ15_22730
so part of: sequence
location: 17701..17874
location: region:17701-17874:1
so has part: feature:17701-17874:1:exon
subclass of: SO_0000010

position:17701:1
position: 17701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17874:1
position: 17874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17701-17874:1:exon

NLZ15_RS22730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 255519
locus tag: NLZ15_RS22730
old locus tag: NLZ15_22730
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRIQVPLLRINGDQVVNIPEEFELDADDVVIYRRGDALVIEPRREKAPDDSAGAGED
SIO_010081: NLZ15_RS22730
subclass of: SO_0000673
so part of: NLZ15_RS22730
location: 17701..17874
location: region:17701-17874:1
so has part: feature:17701-17874:1:exon

WP_254489124.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17701-17874:1:exon

NLZ15_RS22735
type: Gene
subclass of: SO_0000704
RO_0002162: 255519
locus tag: NLZ15_RS22735
old locus tag: NLZ15_22735
so part of: sequence
location: complement(17871..18377)
location: region:17871-18377:-1
so has part: feature:17871-18377:-1:exon
subclass of: SO_0000010

position:17871:-1
position: 17871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18377:-1
position: 18377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17871-18377:-1:exon

NLZ15_RS22735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 255519
locus tag: NLZ15_RS22735
old locus tag: NLZ15_22735
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPINLYPRRVGLVGSDCKPTWRRFDAWHDGEAISRAVRQIDGARFHNKQPGKSVWNQRVRRFQYRCEKHPGEFGSLVERHSEDGAIQYVCPVCMPGSAKGLPEAHVCSATSLSSPDFVRESMVLTGAANHLTEHFAPTAHICDRCQHYAIEARLRNGRTETRCPMCDG
SIO_010081: NLZ15_RS22735
subclass of: SO_0000673
so part of: NLZ15_RS22735
location: complement(17871..18377)
location: region:17871-18377:-1
so has part: feature:17871-18377:-1:exon

WP_254489126.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17871-18377:-1:exon

NLZ15_RS22740
type: Gene
subclass of: SO_0000704
RO_0002162: 255519
locus tag: NLZ15_RS22740
old locus tag: NLZ15_22740
so part of: sequence
location: complement(18796..18999)
location: region:18796-18999:-1
so has part: feature:18796-18999:-1:exon
subclass of: SO_0000010

position:18796:-1
position: 18796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18999:-1
position: 18999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18796-18999:-1:exon

NLZ15_RS22740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 255519
locus tag: NLZ15_RS22740
old locus tag: NLZ15_22740
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MATPANERQALCRQRQRARGFRRLTTTLDGSTSETLSKLAEQHGQTKAQVIRLGILLADRALAGKGE
SIO_010081: NLZ15_RS22740
subclass of: SO_0000673
so part of: NLZ15_RS22740
location: complement(18796..18999)
location: region:18796-18999:-1
so has part: feature:18796-18999:-1:exon

WP_254489128.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18796-18999:-1:exon