Citrobacter arsenatis strain LY-1 plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter.
Complete genome sequence of an arsenate-respiring bacteria, Citrobacter sp. LY-1
Submitted (07-MAR-2019) School of Environmental Science, Hubei Polytechnic University, Guilin North Street, Huangshi, Hubei 435003, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP037862.1.\nBacteria and source DNA available from Jiexun Huang.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. 2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 12.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/05/2023 02:56:38\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,135\nCDSs (total) :: 5,019\nGenes (coding) :: 4,949\nCDSs (with protein) :: 4,949\nGenes (RNA) :: 116\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 83\nncRNAs :: 8\nPseudo Genes (total) :: 70\nCDSs (without protein) :: 70\nPseudo Genes (ambiguous residues) :: 0 of 70\nPseudo Genes (frameshifted) :: 26 of 70\nPseudo Genes (incomplete) :: 44 of 70\nPseudo Genes (internal stop) :: 19 of 70\nPseudo Genes (multiple problems) :: 15 of 70\nPseudo Genes (short protein) :: 1 of 70\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_000957083.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
MobC family plasmid mobilization relaxosome protein
COORDINATES: protein motif:HMM:NF015397.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF016710.2
COORDINATES: similar to AA sequence:RefSeq:WP_001447512.1
MbeD family mobilization/exclusion protein
COORDINATES: similar to AA sequence:RefSeq:WP_001140599.1
COORDINATES: similar to AA sequence:RefSeq:WP_014542885.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_016192195.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF025107.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015387122.1
GO:0003676 - nucleic acid binding [Evidence IEA]