Citrobacter arsenatis strain LY-1 plasmid unnamed1, complete sequence.
type: Entry
definition: Citrobacter arsenatis strain LY-1 plasmid unnamed1, complete sequence.
sequence version: NZ_CP037862.1
sequence date: 2023-05-05
sequence: sequence
division: CON
label: NZ_CP037862.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN11080768
keyword: RefSeq
source: Citrobacter arsenatis
organism: Citrobacter arsenatis
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP037862.1.\nBacteria and source DNA available from Jiexun Huang.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. 2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 12.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/05/2023 02:56:38\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,135\nCDSs (total) :: 5,019\nGenes (coding) :: 4,949\nCDSs (with protein) :: 4,949\nGenes (RNA) :: 116\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 83\nncRNAs :: 8\nPseudo Genes (total) :: 70\nCDSs (without protein) :: 70\nPseudo Genes (ambiguous residues) :: 0 of 70\nPseudo Genes (frameshifted) :: 26 of 70\nPseudo Genes (incomplete) :: 44 of 70\nPseudo Genes (internal stop) :: 19 of 70\nPseudo Genes (multiple problems) :: 15 of 70\nPseudo Genes (short protein) :: 1 of 70\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 15855
topology: circular
so has quality: SO_0000988
location: 1..15855
location: region:1-15855:1
RO_0002162: 2546350

NZ_CP037862
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN11080768
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of an arsenate-respiring bacteria, Citrobacter sp. LY-1
author: Wang, H.
author: Liu, Y.
author: Li, Q.
author: Huang, J.
journal: Unpublished

2
title: Direct Submission
author: Wang, H.
author: Liu, Y.
author: Li, Q.
author: Huang, J.
journal: Submitted (07-MAR-2019) School of Environmental Science, Hubei Polytechnic University, Guilin North Street, Huangshi, Hubei 435003, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15855:1
position: 15855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15855:1:source
so part of: sequence
organism: Citrobacter arsenatis
mol type: genomic DNA
strain: LY-1
isolation source: sediment
type material: type strain of Citrobacter arsenatis
plasmid: unnamed1
country: China:Huangshi
collection date: 2018-04-07

2546350
type: Taxonomy
SIO_000068: taxonomy

E1B03_RS00005
type: Gene
subclass of: SO_0000704
RO_0002162: 2546350
locus tag: E1B03_RS00005
old locus tag: E1B03_00005
so part of: sequence
location: 320..643
location: region:320-643:1
so has part: feature:320-643:1:exon
subclass of: SO_0000010

position:320:1
position: 320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:643:1
position: 643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:320-643:1:exon

E1B03_RS00005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2546350
locus tag: E1B03_RS00005
old locus tag: E1B03_00005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000957083.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobC family plasmid mobilization relaxosome protein
translation: MLTMWVTQDEHQQLLERCDGKQLAAWMRQICLDTRPARSSRLPSIDPVLLRQLAGMGNNLNQIARKINGGQWSGADRVQVVAALMAIDAGLERLRHTVRENGADDDR
SIO_010081: E1B03_RS00005
subclass of: SO_0000673
so part of: E1B03_RS00005
location: 320..643
location: region:320-643:1
so has part: feature:320-643:1:exon

WP_207949448.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:320-643:1:exon

E1B03_RS26350
type: Gene
subclass of: SO_0000704
RO_0002162: 2546350
locus tag: E1B03_RS26350
pseudo: true
so part of: sequence
location: 852..>1283
location: region:852-1283:1
so has part: feature:852-1283:1:exon
subclass of: SO_0000010

position:852:1
position: 852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1283:1
position: 1283
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:852-1283:1:exon

E1B03_RS26350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2546350
locus tag: E1B03_RS26350
inference: COORDINATES: protein motif:HMM:NF015397.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
SIO_010081: E1B03_RS26350
subclass of: SO_0000673
so part of: E1B03_RS26350
location: 852..>1283
location: region:852-1283:1
so has part: feature:852-1283:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:852-1283:1:exon

E1B03_RS26140
type: Gene
subclass of: SO_0000704
RO_0002162: 2546350
locus tag: E1B03_RS26140
so part of: sequence
location: 1321..1818
location: region:1321-1818:1
so has part: feature:1321-1818:1:exon
subclass of: SO_0000010

position:1321:1
position: 1321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1818:1
position: 1818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1321-1818:1:exon

E1B03_RS26140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2546350
locus tag: E1B03_RS26140
inference: COORDINATES: protein motif:HMM:NF016710.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MbeB family mobilization protein
translation: MSSLLTLAQDLEQNSKAQRQSTSEMLKAAFSEHEAYVNQELSESAKRINSAILDHDQKLSSAISQNTRGMLKTIGRTWLIIAGVSFLLICTSGSILWWQGQKILDNYQAISEQKDALSKLNARTWGVTYREDSNGRFLVLPSGMKGDTNWTVNDGAMNAVKLVQE
SIO_010081: E1B03_RS26140
subclass of: SO_0000673
so part of: E1B03_RS26140
location: 1321..1818
location: region:1321-1818:1
so has part: feature:1321-1818:1:exon

WP_157944932.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1321-1818:1:exon

E1B03_RS26145
type: Gene
subclass of: SO_0000704
RO_0002162: 2546350
locus tag: E1B03_RS26145
so part of: sequence
location: 1825..2040
location: region:1825-2040:1
so has part: feature:1825-2040:1:exon
subclass of: SO_0000010

position:1825:1
position: 1825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2040:1
position: 2040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1825-2040:1:exon

E1B03_RS26145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2546350
locus tag: E1B03_RS26145
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001447512.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MbeD family mobilization/exclusion protein
translation: MTELETQLLSAFEQLQQDYAQQLSAWEAASSELQRMFGITQRENAALSERVSDLSRQVQSLSEQLRRLSVR
SIO_010081: E1B03_RS26145
subclass of: SO_0000673
so part of: E1B03_RS26145
location: 1825..2040
location: region:1825-2040:1
so has part: feature:1825-2040:1:exon

WP_032634148.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1825-2040:1:exon

E1B03_RS00015
type: Gene
subclass of: SO_0000704
RO_0002162: 2546350
locus tag: E1B03_RS00015
old locus tag: E1B03_00015
so part of: sequence
location: complement(2144..2575)
location: region:2144-2575:-1
so has part: feature:2144-2575:-1:exon
subclass of: SO_0000010

position:2144:-1
position: 2144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2575:-1
position: 2575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2144-2575:-1:exon

E1B03_RS00015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2546350
locus tag: E1B03_RS00015
old locus tag: E1B03_00015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001140599.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKTLLNLSQAAQAVGITRRTLYNHVKQGKVTVSRDGKNNPVVDVSELIRVYGNVNLPEKQIPSISHRENTQKNFPHEQLTAMQKELAEMKQAITLMLEDKTLREKENQQHEDEKNQLREEIKKLSESLEQAQKKGFWSRLFG
SIO_010081: E1B03_RS00015
subclass of: SO_0000673
so part of: E1B03_RS00015
location: complement(2144..2575)
location: region:2144-2575:-1
so has part: feature:2144-2575:-1:exon

WP_133085517.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2144-2575:-1:exon

E1B03_RS00020
type: Gene
subclass of: SO_0000704
RO_0002162: 2546350
locus tag: E1B03_RS00020
old locus tag: E1B03_00020
so part of: sequence
location: complement(2943..3254)
location: region:2943-3254:-1
so has part: feature:2943-3254:-1:exon
subclass of: SO_0000010

position:2943:-1
position: 2943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3254:-1
position: 3254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2943-3254:-1:exon

E1B03_RS00020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2546350
locus tag: E1B03_RS00020
old locus tag: E1B03_00020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014542885.1
GO function: GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO process: GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MPQVIVSALAQRDLQRLQDFLKTKNRLAARKAGEVIIRAIQQLKTQPDMGRPVSLLPLEYQELVIGFGDSGYVMLYRHDRETDRIVILTVRHQKEAGYHGLQE
SIO_010081: E1B03_RS00020
subclass of: SO_0000673
so part of: E1B03_RS00020
location: complement(2943..3254)
location: region:2943-3254:-1
so has part: feature:2943-3254:-1:exon

WP_015059150.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2943-3254:-1:exon

E1B03_RS00025
type: Gene
subclass of: SO_0000704
RO_0002162: 2546350
locus tag: E1B03_RS00025
old locus tag: E1B03_00025
so part of: sequence
location: complement(3242..3520)
location: region:3242-3520:-1
so has part: feature:3242-3520:-1:exon
subclass of: SO_0000010

position:3242:-1
position: 3242
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3520:-1
position: 3520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3242-3520:-1:exon

E1B03_RS00025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2546350
locus tag: E1B03_RS00025
old locus tag: E1B03_00025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016192195.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CopG family ribbon-helix-helix protein
translation: MSAATSIRLDDELKDRLKTLADDRHRSAHALMLEAITEYIDREEKRSQYLRDGQAAWQHYQETGLHLSAEEVEAWIDTWGTENEQDAPPCHR
SIO_010081: E1B03_RS00025
subclass of: SO_0000673
so part of: E1B03_RS00025
location: complement(3242..3520)
location: region:3242-3520:-1
so has part: feature:3242-3520:-1:exon

WP_014542884.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3242-3520:-1:exon

E1B03_RS26150
type: Gene
subclass of: SO_0000704
RO_0002162: 2546350
locus tag: E1B03_RS26150
so part of: sequence
location: 3894..4055
location: region:3894-4055:1
so has part: feature:3894-4055:1:exon
subclass of: SO_0000010

position:3894:1
position: 3894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4055:1
position: 4055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3894-4055:1:exon

E1B03_RS26150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2546350
locus tag: E1B03_RS26150
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIKKTTDALIRDLNHNNRLLGRMKREGMDNVSDTAIVKRSITAIITEIYIRGR
SIO_010081: E1B03_RS26150
subclass of: SO_0000673
so part of: E1B03_RS26150
location: 3894..4055
location: region:3894-4055:1
so has part: feature:3894-4055:1:exon

WP_157944930.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3894-4055:1:exon

E1B03_RS00030
type: Gene
subclass of: SO_0000704
RO_0002162: 2546350
locus tag: E1B03_RS00030
old locus tag: E1B03_00030
so part of: sequence
location: complement(4136..4696)
location: region:4136-4696:-1
so has part: feature:4136-4696:-1:exon
subclass of: SO_0000010

position:4136:-1
position: 4136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4696:-1
position: 4696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4136-4696:-1:exon

E1B03_RS00030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2546350
locus tag: E1B03_RS00030
old locus tag: E1B03_00030
inference: COORDINATES: protein motif:HMM:NF025107.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MMSHDLKKENTEIPNTILSIWGRTILGSGWTTIPNELLKNQARLGLSNSELVLLIHLISFMHSSSAKIFPSIELLSERMSQDRRTIQRTIQRLEEKELIRKRVRSKGKLDIGLTNVYDISPLMLKIINIQLPSMTPPPQIHVCPRCKKIAKSEAEIESLFGYRRVNPDKRVIQSWCKECRGTPHQT
SIO_010081: E1B03_RS00030
subclass of: SO_0000673
so part of: E1B03_RS00030
location: complement(4136..4696)
location: region:4136-4696:-1
so has part: feature:4136-4696:-1:exon

WP_105277857.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4136-4696:-1:exon

E1B03_RS00035
type: Gene
subclass of: SO_0000704
RO_0002162: 2546350
locus tag: E1B03_RS00035
old locus tag: E1B03_00035
so part of: sequence
location: 5119..5565
location: region:5119-5565:1
so has part: feature:5119-5565:1:exon
subclass of: SO_0000010

position:5119:1
position: 5119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5565:1
position: 5565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5119-5565:1:exon

E1B03_RS00035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2546350
locus tag: E1B03_RS00035
old locus tag: E1B03_00035
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAIRFNKVVLANDFTHGALNEECFVDLPFMEEHHRQALATFIGRVTREEPLPGKNKPSWLNDDQEKLPDTDAYQDGNYWHYHCGPYNDATRLKSMTYNLSLNLSGLTSAEVIHYQKMDDGTVFVVGFSPKHQPFPASDNNNPLFLEDE
SIO_010081: E1B03_RS00035
subclass of: SO_0000673
so part of: E1B03_RS00035
location: 5119..5565
location: region:5119-5565:1
so has part: feature:5119-5565:1:exon

WP_105277859.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5119-5565:1:exon

E1B03_RS00045
type: Gene
subclass of: SO_0000704
RO_0002162: 2546350
locus tag: E1B03_RS00045
old locus tag: E1B03_00045
so part of: sequence
location: 6667..7536
location: region:6667-7536:1
so has part: feature:6667-7536:1:exon
subclass of: SO_0000010

position:6667:1
position: 6667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7536:1
position: 7536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6667-7536:1:exon

E1B03_RS00045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2546350
locus tag: E1B03_RS00045
old locus tag: E1B03_00045
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015387122.1
GO function: GO:0003676 - nucleic acid binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: WYL domain-containing protein
translation: MKNIRNQNFIDDRLWHIEWLLMMRGWLSRIDLMDKFGIKGAAASRDIKRYKEQSGDNLYLDHRVKRYVADFDKFKPIYEASEDLIFSKLTDLDESRFLGAGYPLIETIPSLAEINPKDITSITRAILNMNVLNISYYSMTSGASEKKIVPHSMFYNDLKTYVRCYDLGRCKFLDLVVGRIQEIFGEDGSAPAECLREFDDDWNTYISLELVVHPRVQHKKAIESDMQMTDGVKLVEVRKSLAHYWLRRWCVDCSATASMTDKSFQLHLRNSSVIKGVNGAFPGVNNHID
SIO_010081: E1B03_RS00045
subclass of: SO_0000673
so part of: E1B03_RS00045
location: 6667..7536
location: region:6667-7536:1
so has part: feature:6667-7536:1:exon

WP_105277862.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6667-7536:1:exon

E1B03_RS00055
type: Gene
subclass of: SO_0000704
RO_0002162: 2546350
locus tag: E1B03_RS00055
old locus tag: E1B03_00055
so part of: sequence
location: 8629..8952
location: region:8629-8952:1
so has part: feature:8629-8952:1:exon
subclass of: SO_0000010

position:8629:1
position: 8629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8952:1
position: 8952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8629-8952:1:exon

E1B03_RS00055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2546350
locus tag: E1B03_RS00055
old locus tag: E1B03_00055
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000957083.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobC family plasmid mobilization relaxosome protein
translation: MLTMWVTQDEHQQLLERCDGKQLAAWMRQICLDTRPARSSRLPSIDPVLLRQLAGMGNNLNQIARKINGGQWSGADRVQVVAALMAIDAGLERLRHTVRENGADDDR
SIO_010081: E1B03_RS00055
subclass of: SO_0000673
so part of: E1B03_RS00055
location: 8629..8952
location: region:8629-8952:1
so has part: feature:8629-8952:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8629-8952:1:exon

E1B03_RS26355
type: Gene
subclass of: SO_0000704
RO_0002162: 2546350
locus tag: E1B03_RS26355
pseudo: true
so part of: sequence
location: 9161..>9592
location: region:9161-9592:1
so has part: feature:9161-9592:1:exon
subclass of: SO_0000010

position:9161:1
position: 9161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9592:1
position: 9592
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9161-9592:1:exon

E1B03_RS26355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2546350
locus tag: E1B03_RS26355
inference: COORDINATES: protein motif:HMM:NF015397.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
SIO_010081: E1B03_RS26355
subclass of: SO_0000673
so part of: E1B03_RS26355
location: 9161..>9592
location: region:9161-9592:1
so has part: feature:9161-9592:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9161-9592:1:exon

E1B03_RS26160
type: Gene
subclass of: SO_0000704
RO_0002162: 2546350
locus tag: E1B03_RS26160
so part of: sequence
location: 9630..10127
location: region:9630-10127:1
so has part: feature:9630-10127:1:exon
subclass of: SO_0000010

position:9630:1
position: 9630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10127:1
position: 10127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9630-10127:1:exon

E1B03_RS26160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2546350
locus tag: E1B03_RS26160
inference: COORDINATES: protein motif:HMM:NF016710.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MbeB family mobilization protein
translation: MSSLLTLAQDLEQNSKAQRQSTSEMLKAAFSEHEAYVNQELSESAKRINSAILDHDQKLSSAISQNTRGMLKTIGRTWLIIAGVSFLLICTSGSILWWQGQKILDNYQAISEQKDALSKLNARTWGVTYREDSNGRFLVLPSGMKGDTNWTVNDGAMNAVKLVQE
SIO_010081: E1B03_RS26160
subclass of: SO_0000673
so part of: E1B03_RS26160
location: 9630..10127
location: region:9630-10127:1
so has part: feature:9630-10127:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9630-10127:1:exon

E1B03_RS26165
type: Gene
subclass of: SO_0000704
RO_0002162: 2546350
locus tag: E1B03_RS26165
so part of: sequence
location: 10134..10349
location: region:10134-10349:1
so has part: feature:10134-10349:1:exon
subclass of: SO_0000010

position:10134:1
position: 10134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10349:1
position: 10349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10134-10349:1:exon

E1B03_RS26165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2546350
locus tag: E1B03_RS26165
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001447512.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MbeD family mobilization/exclusion protein
translation: MTELETQLLSAFEQLQQDYAQQLSAWEAASSELQRMFGITQRENAALSERVSDLSRQVQSLSEQLRRLSVR
SIO_010081: E1B03_RS26165
subclass of: SO_0000673
so part of: E1B03_RS26165
location: 10134..10349
location: region:10134-10349:1
so has part: feature:10134-10349:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10134-10349:1:exon

E1B03_RS00065
type: Gene
subclass of: SO_0000704
RO_0002162: 2546350
locus tag: E1B03_RS00065
old locus tag: E1B03_00065
so part of: sequence
location: complement(10453..10884)
location: region:10453-10884:-1
so has part: feature:10453-10884:-1:exon
subclass of: SO_0000010

position:10453:-1
position: 10453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10884:-1
position: 10884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10453-10884:-1:exon

E1B03_RS00065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2546350
locus tag: E1B03_RS00065
old locus tag: E1B03_00065
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001140599.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKTLLNLSQAAQAVGITRRTLYNHVKQGKVTVSRDGKNNPVVDVSELIRVYGNVNLPEKQIPSISHRENTQKNFPHEQLTAMQKELAEMKQAITLMLEDKTLREKENQQHEDEKNQLREEIKKLSESLEQAQKKGFWSRLFG
SIO_010081: E1B03_RS00065
subclass of: SO_0000673
so part of: E1B03_RS00065
location: complement(10453..10884)
location: region:10453-10884:-1
so has part: feature:10453-10884:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10453-10884:-1:exon

E1B03_RS00070
type: Gene
subclass of: SO_0000704
RO_0002162: 2546350
locus tag: E1B03_RS00070
old locus tag: E1B03_00070
so part of: sequence
location: complement(11252..11563)
location: region:11252-11563:-1
so has part: feature:11252-11563:-1:exon
subclass of: SO_0000010

position:11252:-1
position: 11252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11563:-1
position: 11563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11252-11563:-1:exon

E1B03_RS00070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2546350
locus tag: E1B03_RS00070
old locus tag: E1B03_00070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014542885.1
GO function: GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO process: GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MPQVIVSALAQRDLQRLQDFLKTKNRLAARKAGEVIIRAIQQLKTQPDMGRPVSLLPLEYQELVIGFGDSGYVMLYRHDRETDRIVILTVRHQKEAGYHGLQE
SIO_010081: E1B03_RS00070
subclass of: SO_0000673
so part of: E1B03_RS00070
location: complement(11252..11563)
location: region:11252-11563:-1
so has part: feature:11252-11563:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11252-11563:-1:exon

E1B03_RS00075
type: Gene
subclass of: SO_0000704
RO_0002162: 2546350
locus tag: E1B03_RS00075
old locus tag: E1B03_00075
so part of: sequence
location: complement(11551..11829)
location: region:11551-11829:-1
so has part: feature:11551-11829:-1:exon
subclass of: SO_0000010

position:11551:-1
position: 11551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11829:-1
position: 11829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11551-11829:-1:exon

E1B03_RS00075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2546350
locus tag: E1B03_RS00075
old locus tag: E1B03_00075
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016192195.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CopG family ribbon-helix-helix protein
translation: MSAATSIRLDDELKDRLKTLADDRHRSAHALMLEAITEYIDREEKRSQYLRDGQAAWQHYQETGLHLSAEEVEAWIDTWGTENEQDAPPCHR
SIO_010081: E1B03_RS00075
subclass of: SO_0000673
so part of: E1B03_RS00075
location: complement(11551..11829)
location: region:11551-11829:-1
so has part: feature:11551-11829:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11551-11829:-1:exon

E1B03_RS26170
type: Gene
subclass of: SO_0000704
RO_0002162: 2546350
locus tag: E1B03_RS26170
so part of: sequence
location: 12203..12364
location: region:12203-12364:1
so has part: feature:12203-12364:1:exon
subclass of: SO_0000010

position:12203:1
position: 12203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12364:1
position: 12364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12203-12364:1:exon

E1B03_RS26170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2546350
locus tag: E1B03_RS26170
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIKKTTDALIRDLNHNNRLLGRMKREGMDNVSDTAIVKRSITAIITEIYIRGR
SIO_010081: E1B03_RS26170
subclass of: SO_0000673
so part of: E1B03_RS26170
location: 12203..12364
location: region:12203-12364:1
so has part: feature:12203-12364:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12203-12364:1:exon

E1B03_RS00080
type: Gene
subclass of: SO_0000704
RO_0002162: 2546350
locus tag: E1B03_RS00080
old locus tag: E1B03_00080
so part of: sequence
location: complement(12445..13005)
location: region:12445-13005:-1
so has part: feature:12445-13005:-1:exon
subclass of: SO_0000010

position:12445:-1
position: 12445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13005:-1
position: 13005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12445-13005:-1:exon

E1B03_RS00080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2546350
locus tag: E1B03_RS00080
old locus tag: E1B03_00080
inference: COORDINATES: protein motif:HMM:NF025107.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MMSHDLKKENTEIPNTILSIWGRTILGSGWTTIPNELLKNQARLGLSNSELVLLIHLISFMHSSSAKIFPSIELLSERMSQDRRTIQRTIQRLEEKELIRKRVRSKGKLDIGLTNVYDISPLMLKIINIQLPSMTPPPQIHVCPRCKKIAKSEAEIESLFGYRRVNPDKRVIQSWCKECRGTPHQT
SIO_010081: E1B03_RS00080
subclass of: SO_0000673
so part of: E1B03_RS00080
location: complement(12445..13005)
location: region:12445-13005:-1
so has part: feature:12445-13005:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12445-13005:-1:exon

E1B03_RS00085
type: Gene
subclass of: SO_0000704
RO_0002162: 2546350
locus tag: E1B03_RS00085
old locus tag: E1B03_00085
so part of: sequence
location: 13428..13874
location: region:13428-13874:1
so has part: feature:13428-13874:1:exon
subclass of: SO_0000010

position:13428:1
position: 13428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13874:1
position: 13874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13428-13874:1:exon

E1B03_RS00085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2546350
locus tag: E1B03_RS00085
old locus tag: E1B03_00085
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAIRFNKVVLANDFTHGALNEECFVDLPFMEEHHRQALATFIGRVTREEPLPGKNKPSWLNDDQEKLPDTDAYQDGNYWHYHCGPYNDATRLKSMTYNLSLNLSGLTSAEVIHYQKMDDGTVFVVGFSPKHQPFPASDNNNPLFLEDE
SIO_010081: E1B03_RS00085
subclass of: SO_0000673
so part of: E1B03_RS00085
location: 13428..13874
location: region:13428-13874:1
so has part: feature:13428-13874:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13428-13874:1:exon

E1B03_RS00095
type: Gene
subclass of: SO_0000704
RO_0002162: 2546350
locus tag: E1B03_RS00095
old locus tag: E1B03_00095
so part of: sequence
location: 14976..15845
location: region:14976-15845:1
so has part: feature:14976-15845:1:exon
subclass of: SO_0000010

position:14976:1
position: 14976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15845:1
position: 15845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14976-15845:1:exon

E1B03_RS00095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2546350
locus tag: E1B03_RS00095
old locus tag: E1B03_00095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015387122.1
GO function: GO:0003676 - nucleic acid binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: WYL domain-containing protein
translation: MKNIRNQNFIDDRLWHIEWLLMMRGWLSRIDLMDKFGIKGAAASRDIKRYKEQSGDNLYLDHRVKRYVADFDKFKPIYEASEDLIFSKLTDLDESRFLGAGYPLIETIPSLAEINPKDITSITRAILNMNVLNISYYSMTSGASEKKIVPHSMFYNDLKTYVRCYDLGRCKFLDLVVGRIQEIFGEDGSAPAECLREFDDDWNTYISLELVVHPRVQHKKAIESDMQMTDGVKLVEVRKSLAHYWLRRWCVDCSATASMTDKSFQLHLRNSSVIKGVNGAFPGVNNHID
SIO_010081: E1B03_RS00095
subclass of: SO_0000673
so part of: E1B03_RS00095
location: 14976..15845
location: region:14976-15845:1
so has part: feature:14976-15845:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14976-15845:1:exon