Muribaculum gordoncarteri strain TLL-A4 plasmid pTAA-4-2, complete sequence.
Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Muribaculaceae; Muribaculum.
Isolation and identification of novel species under the genus Muribaculum
Submitted (28-FEB-2019) Henning Seedorf Group, Temasek Life Sciences Laboratory Limited, 1 Research Link National University of Singapore Singapore, Singapore 117604, Singapore
REFSEQ INFORMATION: The reference sequence is identical to\nCP039395.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.8\nAssembly Name :: MuGord _TLL-A4_1.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 349.36x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/06/2022 04:01:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,015\nCDSs (total) :: 2,945\nGenes (coding) :: 2,904\nCDSs (with protein) :: 2,904\nGenes (RNA) :: 70\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 3\nPseudo Genes (total) :: 41\nCDSs (without protein) :: 41\nPseudo Genes (ambiguous residues) :: 0 of 41\nPseudo Genes (frameshifted) :: 15 of 41\nPseudo Genes (incomplete) :: 21 of 41\nPseudo Genes (internal stop) :: 8 of 41\nPseudo Genes (multiple problems) :: 3 of 41\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Muribaculum gordoncarteri
COORDINATES: protein motif:HMM:NF026255.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004336027.1
peptidase domain-containing ABC transporter
COORDINATES: similar to AA sequence:RefSeq:WP_009036672.1
COORDINATES: similar to AA sequence:RefSeq:WP_004455436.1
COORDINATES: protein motif:HMM:NF013258.2
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF018290.2
COORDINATES: protein motif:HMM:NF015983.2