Muribaculum gordoncarteri strain TLL-A4 plasmid pTAA-4-2, complete sequence.
type: Entry
definition: Muribaculum gordoncarteri strain TLL-A4 plasmid pTAA-4-2, complete sequence.
sequence version: NZ_CP039395.1
sequence date: 2022-10-06
sequence: sequence
division: CON
label: NZ_CP039395.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN11032478
keyword: RefSeq
source: Muribaculum gordoncarteri
organism: Muribaculum gordoncarteri
taxonomy: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Muribaculaceae; Muribaculum.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP039395.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.8\nAssembly Name :: MuGord _TLL-A4_1.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 349.36x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/06/2022 04:01:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,015\nCDSs (total) :: 2,945\nGenes (coding) :: 2,904\nCDSs (with protein) :: 2,904\nGenes (RNA) :: 70\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 3\nPseudo Genes (total) :: 41\nCDSs (without protein) :: 41\nPseudo Genes (ambiguous residues) :: 0 of 41\nPseudo Genes (frameshifted) :: 15 of 41\nPseudo Genes (incomplete) :: 21 of 41\nPseudo Genes (internal stop) :: 8 of 41\nPseudo Genes (multiple problems) :: 3 of 41\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 28257
topology: circular
so has quality: SO_0000988
location: 1..28257
location: region:1-28257:1
RO_0002162: 2530390

NZ_CP039395
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN11032478
type: BioSample
SIO_000068: biosample

1
title: Isolation and identification of novel species under the genus Muribaculum
author: Miyake, S.
author: Ding, Y.
author: Low, A.
author: Soh, M.
author: Seedorf, H.
journal: Unpublished

2
title: Direct Submission
author: Miyake, S.
author: Ding, Y.
author: Low, A.
author: Soh, M.
author: Seedorf, H.
journal: Submitted (28-FEB-2019) Henning Seedorf Group, Temasek Life Sciences Laboratory Limited, 1 Research Link National University of Singapore Singapore, Singapore 117604, Singapore

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28257:1
position: 28257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-28257:1:source
so part of: sequence
organism: Muribaculum gordoncarteri
mol type: genomic DNA
strain: TLL-A4
isolation source: feces
host: Mus musculus
culture collection: DSM:108194
culture collection: KCTC:15770
type material: type strain of Muribaculum gordoncarteri
plasmid: pTAA-4-2
country: Singapore
collection date: Jan-2016

2530390
type: Taxonomy
SIO_000068: taxonomy

E7746_RS14940
type: Gene
subclass of: SO_0000704
RO_0002162: 2530390
locus tag: E7746_RS14940
old locus tag: E7746_14935
so part of: sequence
location: 113..1003
location: region:113-1003:1
so has part: feature:113-1003:1:exon
subclass of: SO_0000010

position:113:1
position: 113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1003:1
position: 1003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:113-1003:1:exon

E7746_RS14940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2530390
locus tag: E7746_RS14940
old locus tag: E7746_14935
inference: COORDINATES: protein motif:HMM:NF026255.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: outer membrane beta-barrel protein
translation: MGIRGYHTSSSSIEKSYNMWIPSPSIGIYYAPKRNLQFRINYDYIGDIPTIADLSETNQWIDTKLVYHGNSTLKPYKKHDLYITGVTNNKYLNLSLKLGYSYSPDRICNYFIDTENYVLETIVNLKHYSVLSSQLDFTIKPLGKNVWTIWSRVIGAKVHGRGENYKWDGYRFQWMMNSRINLKKWTFEIFYQYPGKIAEGQLIRPRAECWSIGALYRPIKDLSLGIDWFMPFGKSFNESERTVGSAIVQNFSQIRIKDRANMISVSLSWNFSFGKNQNRATPQFDNGDADSGLLKK
SIO_010081: E7746_RS14940
subclass of: SO_0000673
so part of: E7746_RS14940
location: 113..1003
location: region:113-1003:1
so has part: feature:113-1003:1:exon

WP_136411381.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:113-1003:1:exon

E7746_RS14945
type: Gene
subclass of: SO_0000704
RO_0002162: 2530390
locus tag: E7746_RS14945
old locus tag: E7746_14940
so part of: sequence
location: 1005..3191
location: region:1005-3191:1
so has part: feature:1005-3191:1:exon
subclass of: SO_0000010

position:1005:1
position: 1005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3191:1
position: 3191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1005-3191:1:exon

E7746_RS14945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2530390
locus tag: E7746_RS14945
old locus tag: E7746_14940
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004336027.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: peptidase domain-containing ABC transporter
translation: MRAFKFIKQLDSMQCGLACMAMICYHWGQEYSVKFLNKFCTASKDGVSFKGLSDLSDTLGLHCISGKVSIQELRECPLPAILHWNQNHFIVLYKIKNNKFYIADPSKGKLVLNETEFSQHFISLTSDNKEKGLAMFFEPTEKFGIIKDDTINNERNFKFLSKYIFKHKLYFIQIIVGMIFACCMQLLFPFLTQSIVDTGIHTKNIGLIWLILIGELTIVIGRTITDVIRNWLLLHISMRINISIVSDFFIKLLKLPMSFFDTKLMGDIFQRISDHDRIQKFLTSQILKISFAVLSFFIFGIVLCYYNITVFLIFLIGSFLYATWITLFLRKRRKIDYNLFEQQAANQNRTYQFITGIQEIKLQNCEIRRRLEWEDTQADLFKVQMDSLKLQLQQESGGVFINEIKNIVITVITATCVISGDMSLGMMLAVQYIIGQLNSPIEQVVAFIYSLQDVKISLERINEIHNAENEDNHIKNNITNLSDKTITIKNLSFSYDSHALTKTLDNITLNIPSGKITAIVGSSGSGKTTLIKLILGYYSNISGSILIQNQDIRNINLKDWRSHCGVVMQDGVIFSESIARNIAVEDGDIDYTRLEYAAQIANIHDYIMSLPLKYNTQIGRDGMGLSQGQKQRILIARAVYKNPDFIFLDEATNALDAKNEKIIVENLNKFYSGKTVVVVAHRLSTVKNADQIIVIDEGKVVESGEHYSLIAQKGKYYNLIHNQLELGL
SIO_010081: E7746_RS14945
subclass of: SO_0000673
so part of: E7746_RS14945
location: 1005..3191
location: region:1005-3191:1
so has part: feature:1005-3191:1:exon

WP_136411382.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1005-3191:1:exon

E7746_RS14950
type: Gene
subclass of: SO_0000704
RO_0002162: 2530390
locus tag: E7746_RS14950
old locus tag: E7746_14945
so part of: sequence
location: 3697..5118
location: region:3697-5118:1
so has part: feature:3697-5118:1:exon
subclass of: SO_0000010

position:3697:1
position: 3697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5118:1
position: 5118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3697-5118:1:exon

E7746_RS14950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2530390
locus tag: E7746_RS14950
old locus tag: E7746_14945
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009036672.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding protein
translation: MIIGRKEEISKLKRAYDSDHSEFVAVYGRRRIGKTYLIRETFEDKFTFHYSGVFKASTKRQLKVFYQNLLEQGLDPTEAPPKDWFDAFFLLEHLIKKSDDARKVIFIDELPWMDARNSQFVPAFEHFWNGWASARKDILLIICGSATSWIINKIFRNKGGLYNRVTFKLRLQQFSLHECEELVQSMKLPFNRNTIIEGYMVMGGVPFYWAKLERNMSMGMNINNLFLKEEGELHNEFNYIYSSMFNTPEKYIKVVEALSGKKAGLTRDEIITKAQLDNNGHISRILEDLIECGFVRKYCHLDKRLRDAIYQLVDCYTLFYYQFVKMAHGIDEEYWVRTMQTPTYHTWCGLAFERVCLLHTRQIKYAIGISGILANLYSWHVKKNDEHSGAQIDLIIDRADNVINICEIKYAPAGYSLTDSELKKIHNRLSIFDLYIPRSKVAHPILITSNGVLQNSNSFEIPIQVTGDQLFHP
SIO_010081: E7746_RS14950
subclass of: SO_0000673
so part of: E7746_RS14950
location: 3697..5118
location: region:3697-5118:1
so has part: feature:3697-5118:1:exon

WP_136411383.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3697-5118:1:exon

E7746_RS14955
type: Gene
subclass of: SO_0000704
RO_0002162: 2530390
locus tag: E7746_RS14955
old locus tag: E7746_14950
so part of: sequence
location: 5115..5678
location: region:5115-5678:1
so has part: feature:5115-5678:1:exon
subclass of: SO_0000010

position:5115:1
position: 5115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5678:1
position: 5678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5115-5678:1:exon

E7746_RS14955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2530390
locus tag: E7746_RS14955
old locus tag: E7746_14950
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004455436.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MIIGYARVSTTGQNLEGQTDLLTQNGCERIYSEKISGVKKERPQLDRMMDSLRSGDTVIITELTRLGRSVKELLSIIERIHEAGASIKSLRETWLDTTTPQGNLLLTIFAGLSQFERDLTRQRTRQGLEAARARGRKGGRPKSDESKVSTALKMYDSKLHSIDEITKATGISRATLYRAIDKRKKTT
SIO_010081: E7746_RS14955
subclass of: SO_0000673
so part of: E7746_RS14955
location: 5115..5678
location: region:5115-5678:1
so has part: feature:5115-5678:1:exon

WP_136411384.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5115-5678:1:exon

E7746_RS14960
type: Gene
subclass of: SO_0000704
RO_0002162: 2530390
locus tag: E7746_RS14960
old locus tag: E7746_14955
so part of: sequence
location: complement(5797..7497)
location: region:5797-7497:-1
so has part: feature:5797-7497:-1:exon
subclass of: SO_0000010

position:5797:-1
position: 5797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7497:-1
position: 7497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5797-7497:-1:exon

E7746_RS14960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2530390
locus tag: E7746_RS14960
old locus tag: E7746_14955
inference: COORDINATES: protein motif:HMM:NF013258.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid recombination protein
translation: MSHYTVCHYEKCYGPPVSYSTHIERKKADGTEHVPYNIKRRDLTRHNKEFIKEAREIGRSAAIEKRLDAVRHQKDADGNEYERKIRKGQICCIEIRLSASVEGMAEIIEQGRLMEWCRESIKWAQKEHGKENIVSAVLHMDEETPHLHVSLVPVVSGESKKQRTTKKRAAKDKEKAEKNGEEVPKKKRRYKKKATEETLRLCADDVMTQWDLKRRHTEYAIAMASFGLERGEEGSPAKHKDLAQYYKEQYELQRGRLDELLKELAGQEDLVKEKNREILKKDSQIREQEKELNETRSELTEKKNEIARQQQQLDKLLPLIVKAQDRLDTYTEAGEYAEGRIESADRLLQAVDSREKEVAKVEKEALERINNASISFLAKKEVERLAKENAELKLLVSGNATALEREAAATRHEKAGRVKAEQELQQLKETVSGSQTALERRHPDEARLLRELVSIEITNPEWQDCILDGGVLRLKPYAFTDPATRKRIPDEYCQATEIKVEGEGKDSFISICGKRISDFFRDIWAKVKAALGIKQRQEEEKRKQQTQKPDTGQTQEPPRKSRGRRM
SIO_010081: E7746_RS14960
subclass of: SO_0000673
so part of: E7746_RS14960
location: complement(5797..7497)
location: region:5797-7497:-1
so has part: feature:5797-7497:-1:exon

WP_136411385.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5797-7497:-1:exon

E7746_RS14965
type: Gene
subclass of: SO_0000704
RO_0002162: 2530390
locus tag: E7746_RS14965
old locus tag: E7746_14960
so part of: sequence
location: complement(7879..8361)
location: region:7879-8361:-1
so has part: feature:7879-8361:-1:exon
subclass of: SO_0000010

position:7879:-1
position: 7879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8361:-1
position: 8361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7879-8361:-1:exon

E7746_RS14965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2530390
locus tag: E7746_RS14965
old locus tag: E7746_14960
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDETEEEKGDFLEVRKSFEKDPRKVIEIEMDKDGRFSERTRYAMENTLNLSLLSPPEGPKLASEAEALFVLSKRGTVLETTEADFIEGYISPMVYRSSSMKFPQVPIAPKFVKMIKDMNAGSGVPHATITSTINNILDRFFSGYLLVSNRVKMGYGKVEE
SIO_010081: E7746_RS14965
subclass of: SO_0000673
so part of: E7746_RS14965
location: complement(7879..8361)
location: region:7879-8361:-1
so has part: feature:7879-8361:-1:exon

WP_136411386.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7879-8361:-1:exon

E7746_RS14970
type: Gene
subclass of: SO_0000704
RO_0002162: 2530390
locus tag: E7746_RS14970
old locus tag: E7746_14965
so part of: sequence
location: complement(8565..10229)
location: region:8565-10229:-1
so has part: feature:8565-10229:-1:exon
subclass of: SO_0000010

position:8565:-1
position: 8565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10229:-1
position: 10229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8565-10229:-1:exon

E7746_RS14970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2530390
locus tag: E7746_RS14970
old locus tag: E7746_14965
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSIDFSKVDLNNFDFDTLPADEYREFLQAWSDYHGRLNRVSVDVLEKEFERKSDYLQCGEHYELSELYPDEFVELLFERKAFEQGEGIIPFEEVQSYEYQLWLKQKIRNKALRSESPNSDDAQSEKIDYSGYRMWRYNPVVFYKDGKKNRHRLLLKDDGESLSFLNGRDFAILSPVTYVGRTNSYRNARFLYAFAIDLDGVSMHEVRMLLRGMTTGVYPVANIIVNSGHGIHVYYLLKRPIEMFATRLDALNKMKRGLTKIVWLVSKLGAERAQVQSVVQGFRVPGTKTKFGKPIRAFWNRSAPMHTPEELNSFLGRAFSLTDEELGQLTDKTPHNPSRVTLKEAQERWPEWYASRVIGRRRVGKKWQLNRGLYDWWLNILKDGQQVEVHHRYWCILTLVVYAVKCGVPRDEVLADALSLVPAFDRKTETVDNPFTEDDVNDAMRAYDEEYNKWPIRVIETTTGIRIERNKRNNRGREKHIKLMNFVRDNISYPDGNWRDGSGRKKATIESSSHAKLVKEWRAKNPDSKNKSLCARETGLSRPTVTRWWDSAMQ
SIO_010081: E7746_RS14970
subclass of: SO_0000673
so part of: E7746_RS14970
location: complement(8565..10229)
location: region:8565-10229:-1
so has part: feature:8565-10229:-1:exon

WP_136411387.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8565-10229:-1:exon

E7746_RS14975
type: Gene
subclass of: SO_0000704
RO_0002162: 2530390
locus tag: E7746_RS14975
old locus tag: E7746_14970
so part of: sequence
location: 10542..11288
location: region:10542-11288:1
so has part: feature:10542-11288:1:exon
subclass of: SO_0000010

position:10542:1
position: 10542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11288:1
position: 11288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10542-11288:1:exon

E7746_RS14975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2530390
locus tag: E7746_RS14975
old locus tag: E7746_14970
inference: COORDINATES: protein motif:HMM:NF018290.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MKAKIIAIANHKGGVGKTASVASIGAVLASRGKKVLMVDLDTQANLTRHFMENIPPRIIYHAIREQLNLPIYPIRENLDIVPSGLDMAGIDLELQMMFNRERVLKGLLDPFSSIYDYILLDCPPALGLVTINALTAANKLIVPMKADLMSNYGLSMMDQFCVKMQVLNPGIHIDYIFFNIYEKGQTMTEAIETDVRSKYGDRVLSTVIRKNNDVSKAAFDFTDIVSFNPDANGAKDFQALVTELDSKL
SIO_010081: E7746_RS14975
subclass of: SO_0000673
so part of: E7746_RS14975
location: 10542..11288
location: region:10542-11288:1
so has part: feature:10542-11288:1:exon

WP_136411388.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10542-11288:1:exon

E7746_RS14985
type: Gene
subclass of: SO_0000704
RO_0002162: 2530390
locus tag: E7746_RS14985
old locus tag: E7746_14980
so part of: sequence
location: 11796..11975
location: region:11796-11975:1
so has part: feature:11796-11975:1:exon
subclass of: SO_0000010

position:11796:1
position: 11796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11975:1
position: 11975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11796-11975:1:exon

E7746_RS14985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2530390
locus tag: E7746_RS14985
old locus tag: E7746_14980
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVEVRGGLAGVCECTKGAGQASEDGGKCSCSSGAGQKALSFETAKGEETICTCSSGAGQ
SIO_010081: E7746_RS14985
subclass of: SO_0000673
so part of: E7746_RS14985
location: 11796..11975
location: region:11796-11975:1
so has part: feature:11796-11975:1:exon

WP_136411390.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11796-11975:1:exon

E7746_RS14990
type: Gene
subclass of: SO_0000704
RO_0002162: 2530390
locus tag: E7746_RS14990
old locus tag: E7746_14985
so part of: sequence
location: 12050..13513
location: region:12050-13513:1
so has part: feature:12050-13513:1:exon
subclass of: SO_0000010

position:12050:1
position: 12050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13513:1
position: 13513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12050-13513:1:exon

E7746_RS14990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2530390
locus tag: E7746_RS14990
old locus tag: E7746_14985
inference: COORDINATES: protein motif:HMM:NF015983.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: radical SAM protein
translation: MIIKLSPSYTIRNQKNCSYIVRVDKIINNDTNEFGAIPIPPFIGYILSRLGRDELDRDLMLLSDEMGITKNAIHNFVAQLLPNQDNRGNKEFKLSDTFSIVFPSNLLEVCESVEETSFFETEDFNWSQEFIPQRPSMPLSVNLMVTTLCNTSCCYCYANRSLTPLMSTVEIVDIIKELKKKGVVNLTLTGGDIFAHKDWSVILEEVINAGYKPFLSTKTPLSPTDLKVLHDLGYTEIQFSLDSDDPCVLKELIKVDEDYINHVITMFEACSKHGISILIRSVLTKKNGSLESVARLYNFLSNYSCVKEWIMTPAFFSEYKKQQYAEIEIDNDSLKAIYDFSKKHSSNFRIGLNKISSDGYVLQKCNTVSEFVCRNQICLANTTSLSILANGLCSICEMLYDHPEYILGSVRKASISEIWNSEKALNLYSPQQENIESDSPCKTCEVFSKCKTTFGKRICYLDITKVGGNQEDPDPRCPLSKKTKYIL
SIO_010081: E7746_RS14990
subclass of: SO_0000673
so part of: E7746_RS14990
location: 12050..13513
location: region:12050-13513:1
so has part: feature:12050-13513:1:exon

WP_136411391.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12050-13513:1:exon

E7746_RS14995
type: Gene
subclass of: SO_0000704
RO_0002162: 2530390
locus tag: E7746_RS14995
old locus tag: E7746_14990
so part of: sequence
location: 13510..15813
location: region:13510-15813:1
so has part: feature:13510-15813:1:exon
subclass of: SO_0000010

position:13510:1
position: 13510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15813:1
position: 15813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13510-15813:1:exon

E7746_RS14995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2530390
locus tag: E7746_RS14995
old locus tag: E7746_14990
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKLRQIAIAITFCFSLMPLITFGKNIFIQNENLEPIKGASVTTYNNQMDSLGHFMSAEDGLCNILITQTTTNLIIEHPEYSSRLVNLSSSFNDTITLMKNSVSLKEIVVNGDLMTQHLTHQSYKIPLTSMEKYSNFFQSLNEIPNLVVLGSGALFYEGNQNVVLLLNGVETTQIELSSLSKDDIKNVDIYQTPPARFASQGAASVINVITKSSLTGGNISINANQSFYPLKGDNSMAMFYNYKRSRFSLIFNNENQHYRKYSLDEQLNYSHDNTTYEKIKEGQDSKSHNDENNLSLSFQNNKADSYLYNLNIGAGINHEKLTLAQNVISQQNETTLSATNNLSTGFKKIWIANYFEKNLGKESHSGIILGNVKWQRLFSNYTSSYKEFDSHNLPNINVGSNYKIRYDAIFCEAQYEFPSYSWGQLSIDAYNTYKYSKYLDYESPIFQKNNNFGTSIQLIGRKRKIIYQIEMGIRGYHTSSSSIEKSYNMWIPSPSIGIYYAPKRNLQFRINYDYIGDIPTIADLSETNQWIDTKLVYHGNSTLKPYKKHDLYITGVTNNKYLNLSLKLGYSYSPDRICNYFIDTENYVLETIVNLKHYSVLSSQLDFTIKPLGKNVWTIWSRVIGAKVHGRGENYKWDGYRFQWMMNSRINLKKWTFEIFYQYPGKIAEGQLIRPRAECWSIGALYRPIKDLSLGIDWFMPFGKSFNESERTVGSAIVQNFSQIRIKDRANMISVSLSWNFSFGKNQNRATPQFDNGDADSGLLKK
SIO_010081: E7746_RS14995
subclass of: SO_0000673
so part of: E7746_RS14995
location: 13510..15813
location: region:13510-15813:1
so has part: feature:13510-15813:1:exon

WP_136411392.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13510-15813:1:exon

E7746_RS15000
type: Gene
subclass of: SO_0000704
RO_0002162: 2530390
locus tag: E7746_RS15000
old locus tag: E7746_14995
so part of: sequence
location: 15815..18001
location: region:15815-18001:1
so has part: feature:15815-18001:1:exon
subclass of: SO_0000010

position:15815:1
position: 15815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18001:1
position: 18001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15815-18001:1:exon

E7746_RS15000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2530390
locus tag: E7746_RS15000
old locus tag: E7746_14995
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004336027.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: peptidase domain-containing ABC transporter
translation: MRAFKFIKQLDSMQCGLACMAMICYHWGQEYSVKFLNKFCTASKDGVSFKGLSDLSDTLGLHCISGKVSIQELRECPLPAILHWNQNHFIVLYKIKNNKFYIADPSKGKLVLNETEFSQHFISLTSDNKEKGLAMFFEPTEKFGIIKDDTINNERNFKFLSKYIFKHKLYFIQIIVGMIFACCMQLLFPFLTQSIVDTGIHTKNIGLIWLILIGELTIVIGRTITDVIRNWLLLHISMRINISIVSDFFIKLLKLPMSFFDTKLMGDIFQRISDHDRIQKFLTSQILKISFAVLSFFIFGIVLCYYNITVFLIFLIGSFLYATWITLFLRKRRKIDYNLFEQQAANQNRTYQFITGIQEIKLQNCEIRRRLEWEDTQADLFKVQMDSLKLQLQQESGGVFINEIKNIVITVITATCVISGDMSLGMMLAVQYIIGQLNSPIEQVVAFIYSLQDVKISLERINEIHNAENEDNHIKNNITNLSDKTITIKNLSFSYDSHALTKTLDNITLNIPSGKITAIVGSSGSGKTTLIKLILGYYSNISGSILIQNQDIRNINLKDWRSHCGVVMQDGVIFSESIARNIAVEDGDIDYTRLEYAAQIANIHDYIMSLPLKYNTQIGRDGMGLSQGQKQRILIARAVYKNPDFIFLDEATNALDAKNEKIIVENLNKFYSGKTVVVVAHRLSTVKNADQIIVIDEGKVVESGEHYSLIAQKGKYYNLIHNQLELGL
SIO_010081: E7746_RS15000
subclass of: SO_0000673
so part of: E7746_RS15000
location: 15815..18001
location: region:15815-18001:1
so has part: feature:15815-18001:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15815-18001:1:exon

E7746_RS15005
type: Gene
subclass of: SO_0000704
RO_0002162: 2530390
locus tag: E7746_RS15005
old locus tag: E7746_15000
so part of: sequence
location: 18507..19928
location: region:18507-19928:1
so has part: feature:18507-19928:1:exon
subclass of: SO_0000010

position:18507:1
position: 18507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19928:1
position: 19928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18507-19928:1:exon

E7746_RS15005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2530390
locus tag: E7746_RS15005
old locus tag: E7746_15000
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009036672.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding protein
translation: MIIGRKEEISKLKRAYDSDHSEFVAVYGRRRIGKTYLIRETFEDKFTFHYSGVFKASTKRQLKVFYQNLLEQGLDPTEAPPKDWFDAFFLLEHLIKKSDDARKVIFIDELPWMDARNSQFVPAFEHFWNGWASARKDILLIICGSATSWIINKIFRNKGGLYNRVTFKLRLQQFSLHECEELVQSMKLPFNRNTIIEGYMVMGGVPFYWAKLERNMSMGMNINNLFLKEEGELHNEFNYIYSSMFNTPEKYIKVVEALSGKKAGLTRDEIITKAQLDNNGHISRILEDLIECGFVRKYCHLDKRLRDAIYQLVDCYTLFYYQFVKMAHGIDEEYWVRTMQTPTYHTWCGLAFERVCLLHTRQIKYAIGISGILANLYSWHVKKNDEHSGAQIDLIIDRADNVINICEIKYAPAGYSLTDSELKKIHNRLSIFDLYIPRSKVAHPILITSNGVLQNSNSFEIPIQVTGDQLFHP
SIO_010081: E7746_RS15005
subclass of: SO_0000673
so part of: E7746_RS15005
location: 18507..19928
location: region:18507-19928:1
so has part: feature:18507-19928:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18507-19928:1:exon

E7746_RS15010
type: Gene
subclass of: SO_0000704
RO_0002162: 2530390
locus tag: E7746_RS15010
old locus tag: E7746_15005
so part of: sequence
location: 19925..20488
location: region:19925-20488:1
so has part: feature:19925-20488:1:exon
subclass of: SO_0000010

position:19925:1
position: 19925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20488:1
position: 20488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19925-20488:1:exon

E7746_RS15010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2530390
locus tag: E7746_RS15010
old locus tag: E7746_15005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004455436.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MIIGYARVSTTGQNLEGQTDLLTQNGCERIYSEKISGVKKERPQLDRMMDSLRSGDTVIITELTRLGRSVKELLSIIERIHEAGASIKSLRETWLDTTTPQGNLLLTIFAGLSQFERDLTRQRTRQGLEAARARGRKGGRPKSDESKVSTALKMYDSKLHSIDEITKATGISRATLYRAIDKRKKTT
SIO_010081: E7746_RS15010
subclass of: SO_0000673
so part of: E7746_RS15010
location: 19925..20488
location: region:19925-20488:1
so has part: feature:19925-20488:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19925-20488:1:exon

E7746_RS15015
type: Gene
subclass of: SO_0000704
RO_0002162: 2530390
locus tag: E7746_RS15015
old locus tag: E7746_15010
so part of: sequence
location: complement(20607..22307)
location: region:20607-22307:-1
so has part: feature:20607-22307:-1:exon
subclass of: SO_0000010

position:20607:-1
position: 20607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22307:-1
position: 22307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20607-22307:-1:exon

E7746_RS15015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2530390
locus tag: E7746_RS15015
old locus tag: E7746_15010
inference: COORDINATES: protein motif:HMM:NF013258.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid recombination protein
translation: MSHYTVCHYEKCYGPPVSYSTHIERKKADGTEHVPYNIKRRDLTRHNKEFIKEAREIGRSAAIEKRLDAVRHQKDADGNEYERKIRKGQICCIEIRLSASVEGMAEIIEQGRLMEWCRESIKWAQKEHGKENIVSAVLHMDEETPHLHVSLVPVVSGESKKQRTTKKRAAKDKEKAEKNGEEVPKKKRRYKKKATEETLRLCADDVMTQWDLKRRHTEYAIAMASFGLERGEEGSPAKHKDLAQYYKEQYELQRGRLDELLKELAGQEDLVKEKNREILKKDSQIREQEKELNETRSELTEKKNEIARQQQQLDKLLPLIVKAQDRLDTYTEAGEYAEGRIESADRLLQAVDSREKEVAKVEKEALERINNASISFLAKKEVERLAKENAELKLLVSGNATALEREAAATRHEKAGRVKAEQELQQLKETVSGSQTALERRHPDEARLLRELVSIEITNPEWQDCILDGGVLRLKPYAFTDPATRKRIPDEYCQATEIKVEGEGKDSFISICGKRISDFFRDIWAKVKAALGIKQRQEEEKRKQQTQKPDTGQTQEPPRKSRGRRM
SIO_010081: E7746_RS15015
subclass of: SO_0000673
so part of: E7746_RS15015
location: complement(20607..22307)
location: region:20607-22307:-1
so has part: feature:20607-22307:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20607-22307:-1:exon

E7746_RS15020
type: Gene
subclass of: SO_0000704
RO_0002162: 2530390
locus tag: E7746_RS15020
old locus tag: E7746_15015
so part of: sequence
location: complement(22689..23171)
location: region:22689-23171:-1
so has part: feature:22689-23171:-1:exon
subclass of: SO_0000010

position:22689:-1
position: 22689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23171:-1
position: 23171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22689-23171:-1:exon

E7746_RS15020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2530390
locus tag: E7746_RS15020
old locus tag: E7746_15015
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDETEEEKGDFLEVRKSFEKDPRKVIEIEMDKDGRFSERTRYAMENTLNLSLLSPPEGPKLASEAEALFVLSKRGTVLETTEADFIEGYISPMVYRSSSMKFPQVPIAPKFVKMIKDMNAGSGVPHATITSTINNILDRFFSGYLLVSNRVKMGYGKVEE
SIO_010081: E7746_RS15020
subclass of: SO_0000673
so part of: E7746_RS15020
location: complement(22689..23171)
location: region:22689-23171:-1
so has part: feature:22689-23171:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22689-23171:-1:exon

E7746_RS15025
type: Gene
subclass of: SO_0000704
RO_0002162: 2530390
locus tag: E7746_RS15025
old locus tag: E7746_15020
so part of: sequence
location: complement(23375..25039)
location: region:23375-25039:-1
so has part: feature:23375-25039:-1:exon
subclass of: SO_0000010

position:23375:-1
position: 23375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25039:-1
position: 25039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23375-25039:-1:exon

E7746_RS15025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2530390
locus tag: E7746_RS15025
old locus tag: E7746_15020
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSIDFSKVDLNNFDFDTLPADEYREFLQAWSDYHGRLNRVSVDVLEKEFERKSDYLQCGEHYELSELYPDEFVELLFERKAFEQGEGIIPFEEVQSYEYQLWLKQKIRNKALRSESPNSDDAQSEKIDYSGYRMWRYNPVVFYKDGKKNRHRLLLKDDGESLSFLNGRDFAILSPVTYVGRTNSYRNARFLYAFAIDLDGVSMHEVRMLLRGMTTGVYPVANIIVNSGHGIHVYYLLKRPIEMFATRLDALNKMKRGLTKIVWLVSKLGAERAQVQSVVQGFRVPGTKTKFGKPIRAFWNRSAPMHTPEELNSFLGRAFSLTDEELGQLTDKTPHNPSRVTLKEAQERWPEWYASRVIGRRRVGKKWQLNRGLYDWWLNILKDGQQVEVHHRYWCILTLVVYAVKCGVPRDEVLADALSLVPAFDRKTETVDNPFTEDDVNDAMRAYDEEYNKWPIRVIETTTGIRIERNKRNNRGREKHIKLMNFVRDNISYPDGNWRDGSGRKKATIESSSHAKLVKEWRAKNPDSKNKSLCARETGLSRPTVTRWWDSAMQ
SIO_010081: E7746_RS15025
subclass of: SO_0000673
so part of: E7746_RS15025
location: complement(23375..25039)
location: region:23375-25039:-1
so has part: feature:23375-25039:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23375-25039:-1:exon

E7746_RS15030
type: Gene
subclass of: SO_0000704
RO_0002162: 2530390
locus tag: E7746_RS15030
old locus tag: E7746_15025
so part of: sequence
location: 25352..26098
location: region:25352-26098:1
so has part: feature:25352-26098:1:exon
subclass of: SO_0000010

position:25352:1
position: 25352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26098:1
position: 26098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25352-26098:1:exon

E7746_RS15030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2530390
locus tag: E7746_RS15030
old locus tag: E7746_15025
inference: COORDINATES: protein motif:HMM:NF018290.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MKAKIIAIANHKGGVGKTASVASIGAVLASRGKKVLMVDLDTQANLTRHFMENIPPRIIYHAIREQLNLPIYPIRENLDIVPSGLDMAGIDLELQMMFNRERVLKGLLDPFSSIYDYILLDCPPALGLVTINALTAANKLIVPMKADLMSNYGLSMMDQFCVKMQVLNPGIHIDYIFFNIYEKGQTMTEAIETDVRSKYGDRVLSTVIRKNNDVSKAAFDFTDIVSFNPDANGAKDFQALVTELDSKL
SIO_010081: E7746_RS15030
subclass of: SO_0000673
so part of: E7746_RS15030
location: 25352..26098
location: region:25352-26098:1
so has part: feature:25352-26098:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25352-26098:1:exon

E7746_RS15040
type: Gene
subclass of: SO_0000704
RO_0002162: 2530390
locus tag: E7746_RS15040
old locus tag: E7746_15035
so part of: sequence
location: 26606..26785
location: region:26606-26785:1
so has part: feature:26606-26785:1:exon
subclass of: SO_0000010

position:26606:1
position: 26606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26785:1
position: 26785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26606-26785:1:exon

E7746_RS15040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2530390
locus tag: E7746_RS15040
old locus tag: E7746_15035
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVEVRGGLAGVCECTKGAGQASEDGGKCSCSSGAGQKALSFETAKGEETICTCSSGAGQ
SIO_010081: E7746_RS15040
subclass of: SO_0000673
so part of: E7746_RS15040
location: 26606..26785
location: region:26606-26785:1
so has part: feature:26606-26785:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:26606-26785:1:exon

E7746_RS15045
type: Gene
subclass of: SO_0000704
RO_0002162: 2530390
locus tag: E7746_RS15045
old locus tag: E7746_15040
so part of: sequence
location: 26860..27984
location: region:26860-27984:1
so has part: feature:26860-27984:1:exon
subclass of: SO_0000010

position:26860:1
position: 26860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27984:1
position: 27984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26860-27984:1:exon

E7746_RS15045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2530390
locus tag: E7746_RS15045
old locus tag: E7746_15040
inference: COORDINATES: protein motif:HMM:NF015983.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: radical SAM protein
translation: MIIKLSPSYTIRNQKNCSYIVRVDKIINNDTNEFGAIPIPPFIGYILSRLGRDELDRDLMLLSDEMGITKNAIHNFVAQLLPNQDNRGNKEFKLSDTFSIVFPSNLLEVCESVEETSFFETEDFNWSQEFIPQRPSMPLSVNLMVTTLCNTSCCYCYANRSLTPLMSTVEIVDIIKELKKKGVVNLTLTGGDIFAHKDWSVILEEVINAGYKPFLSTKTPLSPTDLKVLHDLGYTEIQFSLDSDDPCVLKELIKVDEDYINHVITMFEACSKHGISILIRSVLTKKNGSLESVARLYNFLSNYSCVKEWIMTPAFFSEYKKQQYAEIEIDNDSLKAIYDFSKKHSSNFRIGLNKISSDGYVLQKCNTVSEFVLS
SIO_010081: E7746_RS15045
subclass of: SO_0000673
so part of: E7746_RS15045
location: 26860..27984
location: region:26860-27984:1
so has part: feature:26860-27984:1:exon

WP_136411393.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26860-27984:1:exon