Muribaculum gordoncarteri strain TLL-A4 plasmid pTAA-4-1.
Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Muribaculaceae; Muribaculum.
Isolation and identification of novel species under the genus Muribaculum
Submitted (28-FEB-2019) Henning Seedorf Group, Temasek Life Sciences Laboratory Limited, 1 Research Link National University of Singapore Singapore, Singapore 117604, Singapore
REFSEQ INFORMATION: The reference sequence is identical to\nCP039394.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.8\nAssembly Name :: MuGord _TLL-A4_1.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 349.36x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/06/2022 04:01:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,015\nCDSs (total) :: 2,945\nGenes (coding) :: 2,904\nCDSs (with protein) :: 2,904\nGenes (RNA) :: 70\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 3\nPseudo Genes (total) :: 41\nCDSs (without protein) :: 41\nPseudo Genes (ambiguous residues) :: 0 of 41\nPseudo Genes (frameshifted) :: 15 of 41\nPseudo Genes (incomplete) :: 21 of 41\nPseudo Genes (internal stop) :: 8 of 41\nPseudo Genes (multiple problems) :: 3 of 41\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##
type strain of Muribaculum gordoncarteri
COORDINATES: protein motif:HMM:NF024547.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013258.2
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007840951.1
COORDINATES: similar to AA sequence:RefSeq:WP_016277876.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008863033.1
COORDINATES: similar to AA sequence:RefSeq:WP_004310832.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004312632.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005636754.1
sigma-54 dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004316495.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008621052.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005938197.1
COORDINATES: protein motif:HMM:NF016961.2
COORDINATES: similar to AA sequence:RefSeq:WP_018967349.1
COORDINATES: similar to AA sequence:RefSeq:WP_004328671.1
COORDINATES: similar to AA sequence:RefSeq:WP_014774664.1
COORDINATES: similar to AA sequence:RefSeq:WP_015545802.1
COORDINATES: similar to AA sequence:RefSeq:WP_005850260.1
COORDINATES: similar to AA sequence:RefSeq:WP_005850264.1
COORDINATES: similar to AA sequence:RefSeq:WP_004328677.1
COORDINATES: similar to AA sequence:RefSeq:WP_009235791.1
COORDINATES: similar to AA sequence:RefSeq:WP_018967355.1
COORDINATES: similar to AA sequence:RefSeq:WP_004328682.1
COORDINATES: similar to AA sequence:RefSeq:WP_004328683.1
COORDINATES: similar to AA sequence:RefSeq:WP_009235787.1
COORDINATES: similar to AA sequence:RefSeq:WP_018967359.1
COORDINATES: similar to AA sequence:RefSeq:WP_004328686.1
COORDINATES: similar to AA sequence:RefSeq:WP_018967361.1
COORDINATES: similar to AA sequence:RefSeq:WP_004328688.1
COORDINATES: similar to AA sequence:RefSeq:WP_004330013.1
COORDINATES: similar to AA sequence:RefSeq:WP_014775030.1
COORDINATES: similar to AA sequence:RefSeq:WP_013760468.1
ADP-ribosylglycohydrolase family protein
COORDINATES: protein motif:HMM:NF015461.2
COORDINATES: similar to AA sequence:RefSeq:WP_004328707.1
COORDINATES: similar to AA sequence:RefSeq:WP_004328708.1
COORDINATES: similar to AA sequence:RefSeq:WP_004328709.1
COORDINATES: similar to AA sequence:RefSeq:WP_004303078.1
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004327640.1
COORDINATES: protein motif:HMM:TIGR00621.2
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019540546.1
COORDINATES: similar to AA sequence:RefSeq:WP_009235756.1
COORDINATES: similar to AA sequence:RefSeq:WP_007832586.1
COORDINATES: similar to AA sequence:RefSeq:WP_010262862.1
nucleoside triphosphate pyrophosphohydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005638469.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015782112.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF016343.2
COORDINATES: similar to AA sequence:RefSeq:WP_005938146.1
COORDINATES: similar to AA sequence:RefSeq:WP_009011307.1
COORDINATES: similar to AA sequence:RefSeq:WP_004328741.1
COORDINATES: similar to AA sequence:RefSeq:WP_018967395.1
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024573.2
COORDINATES: similar to AA sequence:RefSeq:WP_018967397.1
COORDINATES: similar to AA sequence:RefSeq:WP_009235743.1
COORDINATES: similar to AA sequence:RefSeq:WP_004328753.1
COORDINATES: similar to AA sequence:RefSeq:WP_004325306.1
COORDINATES: similar to AA sequence:RefSeq:WP_013612045.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
COORDINATES: protein motif:HMM:NF013395.2
COORDINATES: protein motif:HMM:NF013077.2
COORDINATES: similar to AA sequence:RefSeq:WP_005924805.1
COORDINATES: similar to AA sequence:RefSeq:WP_007212271.1
COORDINATES: similar to AA sequence:RefSeq:WP_007903356.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]; GO:0042908 - xenobiotic transport [Evidence IEA]
multidrug efflux RND transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_016273397.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF025014.2
pilus assembly protein N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009319618.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005839323.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
secondary thiamine-phosphate synthase enzyme YjbQ
COORDINATES: similar to AA sequence:RefSeq:WP_004374529.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome small subunit-dependent GTPase A
COORDINATES: similar to AA sequence:RefSeq:WP_008773932.1
GO:0016891 - endoribonuclease activity, producing 5'-phosphomonoesters [Evidence IEA]
GO:0042779 - tRNA 3'-trailer cleavage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004377101.1
COORDINATES: similar to AA sequence:RefSeq:WP_009316699.1
GO:0008705 - methionine synthase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0009086 - methionine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002688244.1
COORDINATES: protein motif:HMM:NF023288.2
N-acetylmuramidase domain-containing protein