Xanthobacter dioxanivorans strain YN2 plasmid unnamed4, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Xanthobacteraceae; Xanthobacter.
Degradation of 1,4-Dioxane by Xanthobacter sp. YN2
Submitted (23-OCT-2020) Environment, Harbin Institute of Technology, No. 73 Huanghe Road, Harbin, Heilongjiang 150090, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP063366.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. Feb-2018\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 220.97x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 01/04/2023 02:42:34\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,351\nCDSs (total) :: 6,292\nGenes (coding) :: 5,987\nCDSs (with protein) :: 5,987\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 4\nPseudo Genes (total) :: 305\nCDSs (without protein) :: 305\nPseudo Genes (ambiguous residues) :: 0 of 305\nPseudo Genes (frameshifted) :: 196 of 305\nPseudo Genes (incomplete) :: 144 of 305\nPseudo Genes (internal stop) :: 20 of 305\nPseudo Genes (multiple problems) :: 50 of 305\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Xanthobacter dioxanivorans
COORDINATES: protein motif:HMM:NF015354.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011749612.1
COORDINATES: similar to AA sequence:RefSeq:WP_007630340.1
COORDINATES: similar to AA sequence:RefSeq:WP_003605867.1
COORDINATES: similar to AA sequence:RefSeq:WP_007568509.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054712.1
COORDINATES: similar to AA sequence:RefSeq:WP_008967238.1
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_018645492.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008188285.1
COORDINATES: similar to AA sequence:RefSeq:WP_003596187.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_017503469.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501115.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016670.2
COORDINATES: similar to AA sequence:RefSeq:WP_009574187.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014814.2
helix-turn-helix domain-containing protein