Tautonia plasticadhaerens strain ElP plasmid pElP_5, complete sequence.
Bacteria; Planctomycetota; Planctomycetia; Isosphaerales; Isosphaeraceae; Tautonia.
Deep-cultivation of Planctomycetes and their phenomic and genomic characterization uncovers novel biology
Submitted (21-FEB-2019) Microbiology, Radboud Universiteit Nijmegen, Heyendaalseweg 135, Nijmegen 6525AJ, Netherlands
REFSEQ INFORMATION: The reference sequence is identical to\nCP036431.1.\nBacteria and source DNA available from C. Jogler.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP.3 SMRTPortal v. 2.3.0\nGenome Coverage :: 252x\nSequencing Technology :: PacBio RSII; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/26/2022 08:13:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 7,613\nCDSs (total) :: 7,527\nGenes (coding) :: 7,412\nCDSs (with protein) :: 7,412\nGenes (RNA) :: 86\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 3\nPseudo Genes (total) :: 115\nCDSs (without protein) :: 115\nPseudo Genes (ambiguous residues) :: 0 of 115\nPseudo Genes (frameshifted) :: 26 of 115\nPseudo Genes (incomplete) :: 84 of 115\nPseudo Genes (internal stop) :: 17 of 115\nPseudo Genes (multiple problems) :: 11 of 115\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Tautonia plasticadhaerens
COORDINATES: protein motif:HMM:NF021637.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020617527.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020382099.1
type II toxin-antitoxin system HigB family toxin
COORDINATES: protein motif:HMM:NF012485.2
COORDINATES: protein motif:HMM:NF024664.2
COORDINATES: similar to AA sequence:RefSeq:WP_011153703.1
COORDINATES: similar to AA sequence:RefSeq:WP_015127488.1
COORDINATES: similar to AA sequence:RefSeq:WP_017300363.1
COORDINATES: protein motif:HMM:NF039183.1
prepilin-type N-terminal cleavage/methylation domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015249660.1
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015249661.1
COORDINATES: similar to AA sequence:RefSeq:WP_015249665.1
COORDINATES: similar to AA sequence:RefSeq:WP_018290421.1
COORDINATES: protein motif:HMM:NF024751.2
COORDINATES: protein motif:HMM:NF024954.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_015248306.1
COORDINATES: protein motif:HMM:NF028007.2
COORDINATES: protein motif:HMM:TIGR01007.1
GO:0045226 - extracellular polysaccharide biosynthetic process [Evidence IEA]
polysaccharide biosynthesis tyrosine autokinase
COORDINATES: protein motif:HMM:NF014453.2
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: similar to AA sequence:RefSeq:WP_015245923.1
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: similar to AA sequence:RefSeq:WP_015245922.1
COORDINATES: similar to AA sequence:RefSeq:WP_015245921.1
COORDINATES: similar to AA sequence:RefSeq:WP_015245920.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008532370.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015245918.1
COORDINATES: similar to AA sequence:RefSeq:WP_015245917.1
COORDINATES: similar to AA sequence:RefSeq:WP_012107324.1
COORDINATES: protein motif:HMM:NF025072.2
COORDINATES: protein motif:HMM:NF021616.2
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: protein motif:HMM:NF024860.2
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: protein motif:HMM:NF012360.2
COORDINATES: similar to AA sequence:RefSeq:WP_018878402.1
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
asparagine synthase (glutamine-hydrolyzing)
COORDINATES: protein motif:HMM:NF039329.1
COORDINATES: similar to AA sequence:RefSeq:WP_015245938.1
COORDINATES: protein motif:HMM:NF024968.2
COORDINATES: similar to AA sequence:RefSeq:WP_020469813.1
COORDINATES: protein motif:HMM:TIGR03019.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0003674 - molecular_function [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
FemAB family PEP-CTERM system-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_020466844.1
COORDINATES: similar to AA sequence:RefSeq:WP_012492354.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020493930.1
COORDINATES: similar to AA sequence:RefSeq:WP_013156564.1
COORDINATES: protein motif:HMM:NF024752.2
COORDINATES: protein motif:HMM:NF024980.2
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611835.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013672.2
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: protein motif:HMM:NF024629.2
COORDINATES: protein motif:HMM:NF019311.2