Tautonia plasticadhaerens strain ElP plasmid pElP_3.
Bacteria; Planctomycetota; Planctomycetia; Isosphaerales; Isosphaeraceae; Tautonia.
Deep-cultivation of Planctomycetes and their phenomic and genomic characterization uncovers novel biology
Submitted (21-FEB-2019) Microbiology, Radboud Universiteit Nijmegen, Heyendaalseweg 135, Nijmegen 6525AJ, Netherlands
REFSEQ INFORMATION: The reference sequence is identical to\nCP036429.1.\nBacteria and source DNA available from C. Jogler.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP.3 SMRTPortal v. 2.3.0\nGenome Coverage :: 252x\nSequencing Technology :: PacBio RSII; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/26/2022 08:13:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 7,613\nCDSs (total) :: 7,527\nGenes (coding) :: 7,412\nCDSs (with protein) :: 7,412\nGenes (RNA) :: 86\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 3\nPseudo Genes (total) :: 115\nCDSs (without protein) :: 115\nPseudo Genes (ambiguous residues) :: 0 of 115\nPseudo Genes (frameshifted) :: 26 of 115\nPseudo Genes (incomplete) :: 84 of 115\nPseudo Genes (internal stop) :: 17 of 115\nPseudo Genes (multiple problems) :: 11 of 115\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##
type strain of Tautonia plasticadhaerens
COORDINATES: protein motif:HMM:NF018247.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-hairpin-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_076611739.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014626.2
COORDINATES: similar to AA sequence:RefSeq:WP_015244154.1
COORDINATES: protein motif:HMM:NF013015.2
COORDINATES: protein motif:HMM:NF013676.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025079.2
COORDINATES: similar to AA sequence:RefSeq:WP_001165559.1
COORDINATES: similar to AA sequence:RefSeq:WP_015247379.1
COORDINATES: similar to AA sequence:RefSeq:WP_008683603.1
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR02608.1
COORDINATES: protein motif:HMM:NF020039.2
SMP-30/gluconolactonase/LRE family protein
COORDINATES: protein motif:HMM:NF024583.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012098042.1
COORDINATES: protein motif:HMM:NF027442.2
COORDINATES: similar to AA sequence:RefSeq:WP_013566287.1
COORDINATES: similar to AA sequence:RefSeq:WP_015244901.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611506.1
COORDINATES: similar to AA sequence:RefSeq:WP_007916080.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF033542.1
COORDINATES: similar to AA sequence:RefSeq:WP_020471415.1
COORDINATES: similar to AA sequence:RefSeq:WP_010034918.1
COORDINATES: protein motif:HMM:NF024861.2
COORDINATES: similar to AA sequence:RefSeq:WP_012818244.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: similar to AA sequence:RefSeq:WP_006749029.1
COORDINATES: similar to AA sequence:RefSeq:WP_003270462.1
COORDINATES: protein motif:HMM:NF017416.2
COORDINATES: protein motif:HMM:NF012492.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024602.2
COORDINATES: similar to AA sequence:RefSeq:WP_007922834.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612011.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033580.1
COORDINATES: protein motif:HMM:NF033540.1
COORDINATES: protein motif:HMM:NF024935.2
COORDINATES: similar to AA sequence:RefSeq:WP_015179699.1
COORDINATES: similar to AA sequence:RefSeq:WP_015246599.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0000272 - polysaccharide catabolic process [Evidence IEA]
dockerin type I domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004869856.1
COORDINATES: protein motif:HMM:NF017496.2
COORDINATES: protein motif:HMM:NF013704.2
COORDINATES: similar to AA sequence:RefSeq:WP_010585868.1
delta-60 repeat domain-containing protein
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015249431.1
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: similar to AA sequence:RefSeq:WP_023994230.1
COORDINATES: similar to AA sequence:RefSeq:WP_015244063.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018046053.1
COORDINATES: similar to AA sequence:RefSeq:WP_012330014.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694998.1
COORDINATES: protein motif:HMM:NF021524.2
COORDINATES: protein motif:HMM:NF012402.2
COORDINATES: protein motif:HMM:TIGR02050.1
GO:0016881 - acid-amino acid ligase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012520649.1
COORDINATES: similar to AA sequence:RefSeq:WP_010038419.1
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: protein motif:HMM:NF018455.2
COORDINATES: similar to AA sequence:RefSeq:WP_009493545.1
COORDINATES: similar to AA sequence:RefSeq:WP_000301953.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015250105.1
COORDINATES: similar to AA sequence:RefSeq:WP_018111891.1