Tautonia plasticadhaerens strain ElP plasmid pElP_1, complete sequence.
Bacteria; Planctomycetota; Planctomycetia; Isosphaerales; Isosphaeraceae; Tautonia.
Deep-cultivation of Planctomycetes and their phenomic and genomic characterization uncovers novel biology
Submitted (21-FEB-2019) Microbiology, Radboud Universiteit Nijmegen, Heyendaalseweg 135, Nijmegen 6525AJ, Netherlands
REFSEQ INFORMATION: The reference sequence is identical to\nCP036427.1.\nBacteria and source DNA available from C. Jogler.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP.3 SMRTPortal v. 2.3.0\nGenome Coverage :: 252x\nSequencing Technology :: PacBio RSII; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/26/2022 08:13:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 7,613\nCDSs (total) :: 7,527\nGenes (coding) :: 7,412\nCDSs (with protein) :: 7,412\nGenes (RNA) :: 86\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 3\nPseudo Genes (total) :: 115\nCDSs (without protein) :: 115\nPseudo Genes (ambiguous residues) :: 0 of 115\nPseudo Genes (frameshifted) :: 26 of 115\nPseudo Genes (incomplete) :: 84 of 115\nPseudo Genes (internal stop) :: 17 of 115\nPseudo Genes (multiple problems) :: 11 of 115\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Tautonia plasticadhaerens
COORDINATES: protein motif:HMM:NF021637.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019259.2
COORDINATES: similar to AA sequence:RefSeq:WP_011123538.1
COORDINATES: similar to AA sequence:RefSeq:WP_013627707.1
COORDINATES: similar to AA sequence:RefSeq:WP_008706185.1
COORDINATES: protein motif:HMM:NF012787.2
COORDINATES: similar to AA sequence:RefSeq:WP_015250710.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF025616.2
COORDINATES: protein motif:HMM:TIGR02937.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF024881.2
COORDINATES: protein motif:HMM:NF025426.2
COORDINATES: similar to AA sequence:RefSeq:WP_015248038.1
COORDINATES: similar to AA sequence:RefSeq:WP_002646278.1
COORDINATES: similar to AA sequence:RefSeq:WP_013445157.1
COORDINATES: protein motif:HMM:NF017496.2
COORDINATES: similar to AA sequence:RefSeq:WP_015243695.1
COORDINATES: similar to AA sequence:RefSeq:WP_015243696.1
PSD1 and planctomycete cytochrome C domain-containing protein
COORDINATES: protein motif:HMM:NF012472.2
COORDINATES: similar to AA sequence:RefSeq:WP_015250051.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015250052.1
COORDINATES: similar to AA sequence:RefSeq:WP_007417316.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: protein motif:HMM:NF012296.2
COORDINATES: similar to AA sequence:RefSeq:WP_020471415.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010034918.1
COORDINATES: similar to AA sequence:RefSeq:WP_015245500.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011937817.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033540.1
COORDINATES: protein motif:HMM:NF024736.2
COORDINATES: protein motif:HMM:NF024751.2
COORDINATES: similar to AA sequence:RefSeq:WP_015250105.1
COORDINATES: similar to AA sequence:RefSeq:WP_000301953.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019334.2
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015245604.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007922522.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024172.2
COORDINATES: protein motif:HMM:NF014428.2
COORDINATES: similar to AA sequence:RefSeq:WP_010304018.1
COORDINATES: similar to AA sequence:RefSeq:WP_006622792.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006622793.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015244226.1
sulfate/molybdate ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015244227.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005887 - integral component of plasma membrane [Evidence IEA]
GO:0015419 - ABC-type sulfate transporter activity [Evidence IEA]
GO:0008272 - sulfate transport [Evidence IEA]
sulfate ABC transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012187818.1
sulfate ABC transporter permease subunit CysT
COORDINATES: similar to AA sequence:RefSeq:WP_015244229.1
GO:0031362 - anchored component of external side of plasma membrane [Evidence IEA]; GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015419 - ABC-type sulfate transporter activity [Evidence IEA]; GO:0043199 - sulfate binding [Evidence IEA]
sulfate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013109151.1
COORDINATES: protein motif:HMM:NF014035.2
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012911613.1
carboxypeptidase-like regulatory domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015244165.1
COORDINATES: protein motif:HMM:NF013080.2
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015279389.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma 54-interacting transcriptional regulator
COORDINATES: protein motif:HMM:NF019042.2
COORDINATES: protein motif:HMM:TIGR00254.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611739.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015692.2
ADP-ribosylglycohydrolase family protein
COORDINATES: protein motif:HMM:NF014081.2
COORDINATES: protein motif:HMM:NF033545.0
COORDINATES: similar to AA sequence:RefSeq:WP_015247018.1
COORDINATES: protein motif:HMM:NF019231.2
COORDINATES: protein motif:HMM:NF020123.2
COORDINATES: protein motif:HMM:NF016300.2
The SIMPL domain is named for its presence in mouse protein SIMPL (signalling molecule that associates with mouse pelle-like kinase). Bacterial member BP26, from Brucella, was shown to assemble into a channel-like structure, while YggE from E. coli has been associated with resistance to oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002631567.1
COORDINATES: similar to AA sequence:RefSeq:WP_010049105.1
COORDINATES: similar to AA sequence:RefSeq:WP_015248778.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0008556 - P-type potassium transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
potassium-transporting ATPase subunit KdpC
COORDINATES: similar to AA sequence:RefSeq:WP_015248777.1
GO:0031004 - potassium ion-transporting ATPase complex [Evidence IEA]
potassium-transporting ATPase subunit KdpB
COORDINATES: similar to AA sequence:RefSeq:WP_015248776.1
potassium-transporting ATPase subunit KdpA
GO:0005886 - plasma membrane [Evidence IEA]
GO:0043462 - regulation of ATP-dependent activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015248781.1
COORDINATES: similar to AA sequence:RefSeq:WP_015248780.1
COORDINATES: similar to AA sequence:RefSeq:WP_015247976.1
sigma-54 dependent transcriptional regulator
COORDINATES: protein motif:HMM:NF012958.2
COORDINATES: similar to AA sequence:RefSeq:WP_015249847.1
COORDINATES: protein motif:HMM:NF015131.2
COORDINATES: similar to AA sequence:RefSeq:WP_010050961.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015250229.1
COORDINATES: similar to AA sequence:RefSeq:WP_015250319.1
COORDINATES: similar to AA sequence:RefSeq:WP_003887303.1
COORDINATES: protein motif:HMM:NF033519.0
COORDINATES: protein motif:HMM:NF024554.2
COORDINATES: protein motif:HMM:NF024935.2
COORDINATES: protein motif:HMM:NF028136.2
COORDINATES: similar to AA sequence:RefSeq:WP_009493545.1
COORDINATES: protein motif:HMM:NF012688.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004828078.1
COORDINATES: protein motif:HMM:NF014040.2
COORDINATES: similar to AA sequence:RefSeq:WP_015250768.1
COORDINATES: similar to AA sequence:RefSeq:WP_015244154.1
COORDINATES: similar to AA sequence:RefSeq:WP_013564186.1
COORDINATES: protein motif:HMM:NF024907.2
COORDINATES: similar to AA sequence:RefSeq:WP_011552803.1
COORDINATES: similar to AA sequence:RefSeq:WP_015250297.1
COORDINATES: protein motif:HMM:NF040606.1
COORDINATES: protein motif:HMM:NF021788.2
protein N-lysine methyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019547341.1
COORDINATES: similar to AA sequence:RefSeq:WP_013630539.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020466098.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611411.1
COORDINATES: protein motif:HMM:NF012308.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033517.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612169.1
COORDINATES: protein motif:HMM:NF013964.2
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF021640.2
COORDINATES: protein motif:HMM:NF014825.2
COORDINATES: protein motif:HMM:NF012437.2
adenylate/guanylate cyclase domain-containing protein
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: similar to AA sequence:RefSeq:WP_010853772.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: protein motif:HMM:NF012514.2
COORDINATES: protein motif:HMM:NF023294.2
COORDINATES: protein motif:HMM:NF025056.2
toll/interleukin-1 receptor domain-containing protein
COORDINATES: protein motif:HMM:NF013003.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017311331.1
COORDINATES: similar to AA sequence:RefSeq:WP_015721427.1
COORDINATES: similar to AA sequence:RefSeq:WP_015248619.1
toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_015245976.1
COORDINATES: similar to AA sequence:RefSeq:WP_011484595.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611506.1
COORDINATES: protein motif:HMM:NF012305.2
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF013068.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: similar to AA sequence:RefSeq:WP_008671874.1
COORDINATES: similar to AA sequence:RefSeq:WP_015245597.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011553689.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: protein motif:HMM:NF012385.2
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: protein motif:HMM:NF012376.2
COORDINATES: similar to AA sequence:RefSeq:WP_008688296.1
COORDINATES: similar to AA sequence:RefSeq:WP_006978394.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015243825.1