Pseudoalteromonas rhizosphaerae strain hCg-42 plasmid p1, complete sequence.
type: Entry
definition: Pseudoalteromonas rhizosphaerae strain hCg-42 plasmid p1, complete sequence.
sequence version: NZ_CP118497.1
sequence date: 2023-03-01
sequence: sequence
division: CON
label: NZ_CP118497.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN33325099
keyword: RefSeq
source: Pseudoalteromonas rhizosphaerae
organism: Pseudoalteromonas rhizosphaerae
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP118497.1.\nBacteria and source DNA available from Yannick Fleury, LBCM, UBO,\nFrance.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. v0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 278.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/28/2023 16:25:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,691\nCDSs (total) :: 4,555\nGenes (coding) :: 4,484\nCDSs (with protein) :: 4,484\nGenes (RNA) :: 136\nrRNAs :: 10, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 10, 9, 9 (5S, 16S, 23S)\ntRNAs :: 103\nncRNAs :: 5\nPseudo Genes (total) :: 71\nCDSs (without protein) :: 71\nPseudo Genes (ambiguous residues) :: 0 of 71\nPseudo Genes (frameshifted) :: 30 of 71\nPseudo Genes (incomplete) :: 41 of 71\nPseudo Genes (internal stop) :: 21 of 71\nPseudo Genes (multiple problems) :: 19 of 71\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 23860
topology: circular
so has quality: SO_0000988
location: 1..23860
location: region:1-23860:1
RO_0002162: 2518973

NZ_CP118497
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN33325099
type: BioSample
SIO_000068: biosample

1
title: Alterins biosynthetic gene cluster identification from Pseudoalteromonas rhizosphaerae hCg-6 : a genomic and transcriptomic study
author: Fleury, Y.
author: Cuny, H.
journal: Unpublished

2
title: Direct Submission
author: Fleury, Y.
journal: Submitted (16-FEB-2023) LBCM, Universite de Bretagne Occidentale, 6 rue de l'Universite, Quimper 29334, France

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23860:1
position: 23860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-23860:1:source
so part of: sequence
organism: Pseudoalteromonas rhizosphaerae
mol type: genomic DNA
strain: hCg-42
isolation source: hemolymph
host: Crassostrea gigas
plasmid: p1
country: France: Brittany
collection date: 2013

2518973
type: Taxonomy
SIO_000068: taxonomy

PVK79_RS23350
type: Gene
subclass of: SO_0000704
RO_0002162: 2518973
locus tag: PVK79_RS23350
so part of: sequence
location: complement(join(22732..23860,1..1031))
location: region:1-23860:-1
so has part: feature:1-1031:-1:exon
so has part: feature:22732-23860:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23860:-1
position: 23860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1031:-1:exon

position:1031:-1
position: 1031
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:22732-23860:-1:exon

position:22732:-1
position: 22732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PVK79_RS23350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518973
locus tag: PVK79_RS23350
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: ATP-dependent RecD-like DNA helicase
translation: MNVALHQDQMRVTSIPYSSTKMVIFSGVPLKKNSYKTNSGKYYVTIKADPDAIPVQPALGQHWSVKGHRLIEEMETGDYVMQQHTYESPEHIECSLPETGEQLIRFIARESDFKGIGESKARALWELLGKDFHPTVGKDTRESRERLRSVLSEDSINALFEGYAKYKNLAYCNWMTEHKIPASIQQRLLKHHGEESIEAIKQNPYVLIGFGMSFTDVDKLVNFDQFKITACDHRRLSAALETAIRKEIEKGHTYTTHANVRPYLNKLLKDKTLVTQAFQSGHDKAQYILNPDTGAYHPTAQLLMENVVAKRLKALANQNNLYDEVANSAYCSSVGELPYELTKKQIEAVTTCLDNAVSCITGGAGTGKTTVLRTALRAYHQMGFEIHAVALSGRAAMRLHESIGFITSTIAKLLRREPIEPSSDQPKHLLVIDEASMIDLPTMYRLVNHTHPSVRLIFTGDPDQLPPIGCGKVLADIVEAKTVANTMLDIVKRQEGSTGIPEYSKLINQGVMPDQLSTGAIHFHETSKTDIAKVCCELYQESPESSRVMAPTKALVTEINKLIQQAVNPNSDSLEFEINGDKFFLPLRMNDEVLFTQNHYDKGIQNGSLGMLTNAKPSGDSYGEVTLDTGEKVEITQSVLDCMELGYAITLHKAQGSQFPRIIIALQNGRIVDRAWLYTAITRAESEIHIVGSSDDMKQITEAPSHSHKRNSYLKELLG
SIO_010081: PVK79_RS23350
subclass of: SO_0000673
so part of: PVK79_RS23350
location: complement(join(22732..23860,1..1031))
location: region:1-23860:-1
so has part: feature:1-1031:-1:exon
so has part: feature:22732-23860:-1:exon

WP_257324185.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1031:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:22732-23860:-1:exon

PVK79_RS23355
type: Gene
subclass of: SO_0000704
RO_0002162: 2518973
locus tag: PVK79_RS23355
so part of: sequence
location: complement(1028..1465)
location: region:1028-1465:-1
so has part: feature:1028-1465:-1:exon
subclass of: SO_0000010

position:1028:-1
position: 1028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1465:-1
position: 1465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1028-1465:-1:exon

PVK79_RS23355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518973
locus tag: PVK79_RS23355
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005477174.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VPA1267 family protein
translation: MANGPQRAQQNLEAFEVWQATQTDDDFKQIAFKGKLNRIEVAKGVGCGKSALNQNPALRKALKALEDKLRDKGILPPLTESAKSNADKPKQYDNTANRKLLDSKRVSTLEAENIELKAKVKELEGKLERFGELNETLSEMGFMPR
SIO_010081: PVK79_RS23355
subclass of: SO_0000673
so part of: PVK79_RS23355
location: complement(1028..1465)
location: region:1028-1465:-1
so has part: feature:1028-1465:-1:exon

WP_232601847.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1028-1465:-1:exon

PVK79_RS23360
type: Gene
subclass of: SO_0000704
RO_0002162: 2518973
gene: gmtX
locus tag: PVK79_RS23360
so part of: sequence
location: complement(1465..2142)
location: region:1465-2142:-1
so has part: feature:1465-2142:-1:exon
subclass of: SO_0000010

position:2142:-1
position: 2142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1465-2142:-1:exon

PVK79_RS23360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518973
gene: gmtX
locus tag: PVK79_RS23360
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005477284.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: gamma-mobile-trio protein GmtX
translation: MDINIDIILADLKDDKVPRTQKNLDKLNDILKAYVESGQRDFSITQMGRVSAAEGGPGYEALRATKNKHYRTLIEAWAAKCKTTTKKPLSPTSRSKSVPQDNKLLERIPDTAVRALFGQIIAERNRYRKEVNLLKQHANITIDKRPVRQFDASAEPSVEVLPSLSGILTESEKKALAYAISDECMEKHNWQTTQAGQVKDMEYNIEIFPRGFATGLRKLLGEVDD
SIO_010081: PVK79_RS23360
subclass of: SO_0000673
so part of: PVK79_RS23360
location: complement(1465..2142)
location: region:1465-2142:-1
so has part: feature:1465-2142:-1:exon

WP_034823168.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1465-2142:-1:exon

PVK79_RS23365
type: Gene
subclass of: SO_0000704
RO_0002162: 2518973
locus tag: PVK79_RS23365
so part of: sequence
location: complement(2142..4805)
location: region:2142-4805:-1
so has part: feature:2142-4805:-1:exon
subclass of: SO_0000010

position:4805:-1
position: 4805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2142-4805:-1:exon

PVK79_RS23365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518973
locus tag: PVK79_RS23365
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016807537.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: integrase family protein
translation: MAKKVKKRDGRSSDLTFKWMLTTLGPEWQQWQELAAEWMATQHVGVDHKLSALSLFFESYLLEYAPYATDIGLFFKGYNGHICSTEELEATVRKTINDPARVSKSINYPCDFINYVIEHHLSEGDDIGNLIPLVRNPLNKIKRQDSHTETVRNPLPYRYIQDLRQILCPLPDKAELTVIEQNLPQGESLLPSYHYRHFKHWTWAQEQTGQGKAGQSGDWFEVEPDLIDKTDPDCVWRTKEVTRKGNKITVHQIWSPVKAMVIFMKLHLPLRTYQVWMLDSGEADTWRYENGQWVVNTQHDFALGNEKRPFGKGIFRRIHDTMTGLYSTGLYINTNKTADQNKDELERGYIIPWQNEEVLYWLEKLRNWQEKYNPIAKPTDCTTLLKKHIGKEKSKKQLESMGEIAFLFRDASANGEDKYKPVQDISTAFLWYRLLLALENHLAEQGNTLDNGERLKLVVDYPEGTTESSKVATHFPLHSLRVSLITAYTMDTQLPLPVISKLLAGHTRLLMTIYYNKITPSVMAEKMSEAEGELEGKAKQSVRNFLKDASLAQIQCKMVYHKEDSIQAALVNRNPIGWEERSAGLCLVGGNTVKSDEVSTLGGCWNGGELIRDSSAASNRIYDSVPHGPENCIRCRWFITEARYLPALNAQFNQLSYKAHQAANLSVEIEGELEALKDEQFFCEEQGKPFTKHSELQTLQRRHEKQQVEADEYAKDWIACFELICKIIRVEEARNEDDTKDKLIAVGAEQDISYALKFIETDSELLHLSLLCDDAEFFPDLQDELRKTPAIEKRSRQLSRALIKKGFEPIFMEMDEKQQLIAGNAMLRQMAKIADPDDKMEGYRKVANYIEAGEYLSNHKLFNAGMNALSDKSLRLENLTQPALLEG
SIO_010081: PVK79_RS23365
subclass of: SO_0000673
so part of: PVK79_RS23365
location: complement(2142..4805)
location: region:2142-4805:-1
so has part: feature:2142-4805:-1:exon

WP_257324187.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2142-4805:-1:exon

PVK79_RS23370
type: Gene
subclass of: SO_0000704
RO_0002162: 2518973
gene: gmtY
locus tag: PVK79_RS23370
so part of: sequence
location: complement(4805..6262)
location: region:4805-6262:-1
so has part: feature:4805-6262:-1:exon
subclass of: SO_0000010

position:6262:-1
position: 6262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4805-6262:-1:exon

PVK79_RS23370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518973
gene: gmtY
locus tag: PVK79_RS23370
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020196412.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: gamma-mobile-trio recombinase GmtY
translation: MSSVKVKATIVEDNTGIKSQLPILITEQGEVGSVTDYLLKMEADGASNALMNGFIQATSLLLDYMEANKGLFEDPKMLFQTFAKRLYTGTIGEDGLDPSGLYWVPSSTDNVNKHIHRLTAFTDWLANKLGEESMNPLRDATPHEQRLNYAAWYRKNQNDFLGHIEDKTVNRTIRKARTMKGRTPLTKAEDDALAFPDKHWESFYKDGIGGAKDPRVALRDKLMLLLMHGGGLRESEAIMLWVTDVLEDPYDPEKAIVRIYNEVDGKAPEGWRSRSGTKTREAYLQEKYARIPRKRMKGTAYVGWKTRVVDHRDNYIQVQWFPTDYGKVFMSLWKSYQKYRASIDCHHPYAFISFHHSALGNPYTLNAFHQSYAAGLRRIGLEPSKSEGLNPHGHRHSYGRRLERSGLNPLVIRRCMHHKSLESQVPYTGKGQQEISDELNKATLQLANPESKVKSLDWKELVEHGFDDIDPQGYFTGKHPKLRGK
SIO_010081: PVK79_RS23370
subclass of: SO_0000673
so part of: PVK79_RS23370
location: complement(4805..6262)
location: region:4805-6262:-1
so has part: feature:4805-6262:-1:exon

WP_257324188.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4805-6262:-1:exon

PVK79_RS23375
type: Gene
subclass of: SO_0000704
RO_0002162: 2518973
locus tag: PVK79_RS23375
so part of: sequence
location: complement(6425..7228)
location: region:6425-7228:-1
so has part: feature:6425-7228:-1:exon
subclass of: SO_0000010

position:6425:-1
position: 6425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7228:-1
position: 7228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6425-7228:-1:exon

PVK79_RS23375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518973
locus tag: PVK79_RS23375
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019029862.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: outer membrane lipoprotein-sorting protein
translation: MFKPMLSKLLVVALLISGQAYSVQSTDIAAQEKGLRIAKKAKKLDSGWGDSQSEVEMILRNKHGQESRRAIRSKNLELKDEGDKSLIIFDEPRDVKGTAFLNFSNPIEPDDQWLYLPALKRTKRISSRNKSGPFMGSEFSYEDMSSFEVEKYTYKYLRDEIAEDRECFVLEYYPVDKYSGYPRQVVWLDKEMYQPIKTEYYDRKDSLLKTLKLTDYKRYQGKFWRPDKLEMTNHLNGKSTVLLMTNYRFSTGLNEQDFSQNTLKRLR
SIO_010081: PVK79_RS23375
subclass of: SO_0000673
so part of: PVK79_RS23375
location: complement(6425..7228)
location: region:6425-7228:-1
so has part: feature:6425-7228:-1:exon

WP_257324189.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6425-7228:-1:exon

PVK79_RS23380
type: Gene
subclass of: SO_0000704
RO_0002162: 2518973
locus tag: PVK79_RS23380
so part of: sequence
location: complement(7241..9574)
location: region:7241-9574:-1
so has part: feature:7241-9574:-1:exon
subclass of: SO_0000010

position:7241:-1
position: 7241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9574:-1
position: 9574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7241-9574:-1:exon

PVK79_RS23380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518973
locus tag: PVK79_RS23380
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019621427.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MMPL family transporter
translation: MREFILKSGVSRPFVTLLASLLFIIATSWGAGYLTFKSDSRVFFEESNPQLQAFDRMEAVYSQSDNVAFLIVPKSGDVFTKENLSLIYDLTEQAWQTPYSSRVDSITNYQHTFATGDDLIVEDLVLDPEVLDTQRIEEIRAIAVNEPLLAKRLISTEGHVSLVNVTVQMPGTNAEQELTDVSTFVRQIRDDLLEKYPNTEIHLTGLVMMDVAFAEAALADNNTLMPLMFLIVMVAIGLLLRTITGTISTLLIAIVAIVVTLGVTGWLGIYLTPPSAAAPIMILTVVVADCVHILANMFHEMRKGFDKRQAIYNSLEHNLKAIFITSATTALGFLSMNFSDVPPFQDLGNMVAFGVMMAFLFSVTLFPALLAILPIRPFKQDVKEHSGLMAGVSNFVVKNYRILLPSTLCAMLVILFLIPRNELNDRYVEFFDESVPFRMATELMGKELSGVDTIEFSIETGTANGINDPKVIAAIDHFSEWLRTLPEVDHVNTLSDIFKRLNKNMHGDDPAWYKLPEGKELAAQYLLLYEMSLPVGLDLNNQINVDKSGTRVVATLENMPTYELLELEELTTTWFATNYPELKLEAASISLMFAHVSKKNINSMLLGSVLALLLISPILGMVMGSVKYGVISLLPNLLPAGVAFGIWALLSAEVGLGLSVVIGMTLGIVVDDTVHFMSKYLTARREKNMSPEEAVHYTFQSVGPALWFTTLVLVAGFLIMALSTYRVNADMGVMTAITIVIALLVDFLLLPSLLIAADKIRKDPQPVEENSGIVTQN
SIO_010081: PVK79_RS23380
subclass of: SO_0000673
so part of: PVK79_RS23380
location: complement(7241..9574)
location: region:7241-9574:-1
so has part: feature:7241-9574:-1:exon

WP_257324192.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7241-9574:-1:exon

PVK79_RS23385
type: Gene
subclass of: SO_0000704
RO_0002162: 2518973
locus tag: PVK79_RS23385
so part of: sequence
location: complement(9647..10084)
location: region:9647-10084:-1
so has part: feature:9647-10084:-1:exon
subclass of: SO_0000010

position:9647:-1
position: 9647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10084:-1
position: 10084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9647-10084:-1:exon

PVK79_RS23385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518973
locus tag: PVK79_RS23385
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDINNKYETVNTHNLVRMEHSVLLIVMAGVAALNYESINWYLFNALFWGIDLFGFYPGMVYYKYINKNVPKIFYIIYNTSHSYLTWTAFSVAWVYFYGFDYVLLAPWMHLMADRGLFGNTLRPFHVAFNVEKNEHFKKFENTLYK
SIO_010081: PVK79_RS23385
subclass of: SO_0000673
so part of: PVK79_RS23385
location: complement(9647..10084)
location: region:9647-10084:-1
so has part: feature:9647-10084:-1:exon

WP_257324193.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9647-10084:-1:exon

PVK79_RS23390
type: Gene
subclass of: SO_0000704
RO_0002162: 2518973
locus tag: PVK79_RS23390
so part of: sequence
location: 10748..11926
location: region:10748-11926:1
so has part: feature:10748-11926:1:exon
subclass of: SO_0000010

position:10748:1
position: 10748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11926:1
position: 11926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10748-11926:1:exon

PVK79_RS23390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518973
locus tag: PVK79_RS23390
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNTLKKTLLCSLFVLPSLAQAVDIAGKVGAQSRFFTHDEKLQSSLLVEPELYWSDEERRNSFTFKLFARYDALDDARTHLDIREALWLHVGDSWEFRAGIGKIFWGVTESNHLVDVINQTDLVESIDGEEKLGQPILQGTILRDWGVLSAFVLPGFRDRTFPGIDGRLTGQIIIDTHNPLYEDNDKKDHFDYALRYTNSIDIFDFGLSWFKGTNRDPHMVYQSLENNLHQPSAIPLYDQMQQFGVDAQATIGNWLWKIEAIARDDSIGNVGAFTAGFEYTMVGFVDITDLGLLMEYNRNSRNERSPSPLQNDIFVGARLAFNDVQSSQLLIGYTQDLTESSSKSAFIEGSRRLGESLKLTLDVRLFTTDNPTMPLYGIRNEDYGSVTLEYYF
SIO_010081: PVK79_RS23390
subclass of: SO_0000673
so part of: PVK79_RS23390
location: 10748..11926
location: region:10748-11926:1
so has part: feature:10748-11926:1:exon

WP_257324194.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10748-11926:1:exon

PVK79_RS23395
type: Gene
subclass of: SO_0000704
RO_0002162: 2518973
locus tag: PVK79_RS23395
so part of: sequence
location: complement(12292..15378)
location: region:12292-15378:-1
so has part: feature:12292-15378:-1:exon
subclass of: SO_0000010

position:12292:-1
position: 12292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15378:-1
position: 15378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12292-15378:-1:exon

PVK79_RS23395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518973
locus tag: PVK79_RS23395
EC number: 2.7.7.65
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002961745.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ligand-binding sensor domain-containing diguanylate cyclase
translation: MMRFLLVIIVLFCSMPSKASITDYVVKQWNMQNGLPSQSLKSVVQDKQGYMWLGTQFGLSRFDGNTFTNYNTLNSNFLPSNGINKLLVDSEGYLWIGTKDGIVVIDPTTMAAQEFSVKGPVRDVIEDAKGSIWIAANGLYFVSRNQINVSAVHDLLVPVMSASSVKQIVGTVSQLALSPEGIWLVNERYLLRLTNSSSDFAKLRLELTAKVSIPERLAQTIIHDLAWLEGNLYLASELGAYFLDLDDELRPFPLPNANNSAVYKFMSDSNGALWISTYGRLLFRDNSGDWQWVEPSQLDQSIWFADLYRDNDNNIWLASFSEGLWLAHEGRIERHSAISQMTEAVMAISQAPDGRLWVANRSGVGYFDLDKNFINQIPSNQYGRAAVHDLQFDGSRLYIATGRGVYIYENNTLFTVPGRALKDNPVFAISRSSKGGFWLGTGRGMYRLSYGGLTPFAYNAFLGSKFITYVVDEANFGLIGTSKGAYYFTDRGIEKIGDQTSLESAYVTSILNIDGVGILIGSLNDGLFYRSTQGHWRQLDATNGLPYGSIFSLRYDEKLKRIWVSTMKGVYRMPVEQFSNDIESLKVEQVISSYDRQLDGKASQCCTGLGHDAVAELGNSMWYPSLQGVVEIPKDIELFGVKPLQPKVESLNTGIRKLATAALGRNPELEIDERDITLKYTAIDYYAPTSIEFRYRLTGLDSDWRYANTRREAIYTNLPPGAFLFQLEAKRQGEGWQKAQSTEYSFVVPRRFDETIYFRLLITGSFILLFYLVFWVFRKQERRKQTALESLITERTGELRQANDKLNQVNSQLKLMSHSDELTGLRSRRFLFDQLPKDIEHFQRNSQSLQAQGKSLVLLIINFDNFSRINDAYGPIGGDSCLQQMAALLNSRTQGSDYVARWSGDEFLLLLRDFKRTAIDSYVAQLCKVIADHTFKLPSGDSINLTASIGFSFYPLPLLGGQVIGWETSVNLADIALHQVKKRGGDGIANITFDEQLDAFEFEQTNNVEQQLSVLQANGLADIKVWMR
SIO_010081: PVK79_RS23395
subclass of: SO_0000673
so part of: PVK79_RS23395
location: complement(12292..15378)
location: region:12292-15378:-1
so has part: feature:12292-15378:-1:exon

WP_182731835.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12292-15378:-1:exon

PVK79_RS23400
type: Gene
subclass of: SO_0000704
RO_0002162: 2518973
locus tag: PVK79_RS23400
so part of: sequence
location: complement(15408..15878)
location: region:15408-15878:-1
so has part: feature:15408-15878:-1:exon
subclass of: SO_0000010

position:15408:-1
position: 15408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15878:-1
position: 15878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15408-15878:-1:exon

PVK79_RS23400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518973
locus tag: PVK79_RS23400
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008169150.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphatidylglycerophosphatase A
translation: MFLLYTPHQFFGLGFGLGLAPKAPGTFGTFAALPFIFTTMYFPLWLQIVFAVVISIFGIWACGKTADDLGVHDHPAIVWDEVAGFYITMIGAALSWQSLLVGFLLFRFFDIAKPGPIRFLDKRVHGGVGIMADDVLAGIFSLICVQALFKMGYLPF
SIO_010081: PVK79_RS23400
subclass of: SO_0000673
so part of: PVK79_RS23400
location: complement(15408..15878)
location: region:15408-15878:-1
so has part: feature:15408-15878:-1:exon

WP_274804096.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15408-15878:-1:exon

PVK79_RS23405
type: Gene
subclass of: SO_0000704
RO_0002162: 2518973
locus tag: PVK79_RS23405
so part of: sequence
location: complement(16319..17761)
location: region:16319-17761:-1
so has part: feature:16319-17761:-1:exon
subclass of: SO_0000010

position:16319:-1
position: 16319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17761:-1
position: 17761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16319-17761:-1:exon

PVK79_RS23405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518973
locus tag: PVK79_RS23405
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004589456.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS1182 family transposase
translation: MSKFISGEDRNQSTLFPESLEDYVSEDNTVRVIDVFIEELNLAELGFKGLTLKSTGRPKYHPATLLKLYLYGYLNRIQSSRRLETECQRNIELMWLLGKLAPDFKTIADFRKDNGGGIKNVCKTFVEVCRRLNMFEKPVVAIDGSKFKASNNKGNNFTPSKVKFHIDRVEKNIERYLELLDEADKEQANVTKIKATKERLADFRSQLKKLYEIKEQVEAHPDKQISTTDPDSRLMKTQGFTRVVSYNVQSAVDTKHHLIVAHDVTNVPDRGQLASMTKLAQEALRKKDIRVLADKGYFSQPDIKDTIDLGAEPIMPKTDTSSSEKKGIFNRSLFKYDANKDIYLCPAGNELQNRMQVFEQGKYLDVYFNHIACRDCKIRSQCTNSKKDPRRIRRWVHEILTEEMLQKLKNQPELMLHRKQTVEHPFGTIKLWMGATHLLTRGLKSVGTEISLHVLAYNFRRMITIMGVNGLSKAIRVALP
SIO_010081: PVK79_RS23405
subclass of: SO_0000673
so part of: PVK79_RS23405
location: complement(16319..17761)
location: region:16319-17761:-1
so has part: feature:16319-17761:-1:exon

WP_202819450.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16319-17761:-1:exon

PVK79_RS23410
type: Gene
subclass of: SO_0000704
RO_0002162: 2518973
locus tag: PVK79_RS23410
so part of: sequence
location: complement(18008..18304)
location: region:18008-18304:-1
so has part: feature:18008-18304:-1:exon
subclass of: SO_0000010

position:18008:-1
position: 18008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18304:-1
position: 18304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18008-18304:-1:exon

PVK79_RS23410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518973
locus tag: PVK79_RS23410
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIARIKTISFGVLVAALIITITLMVADVEFYGLLSVYVFMVLWSLHKIFLWLIGDEFGIAVQVKIKKDAPKAIRFLGLLFVCFVFYFVAKGLIKHVST
SIO_010081: PVK79_RS23410
subclass of: SO_0000673
so part of: PVK79_RS23410
location: complement(18008..18304)
location: region:18008-18304:-1
so has part: feature:18008-18304:-1:exon

WP_024592041.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18008-18304:-1:exon

PVK79_RS23415
type: Gene
subclass of: SO_0000704
RO_0002162: 2518973
locus tag: PVK79_RS23415
so part of: sequence
location: complement(18380..18676)
location: region:18380-18676:-1
so has part: feature:18380-18676:-1:exon
subclass of: SO_0000010

position:18380:-1
position: 18380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18676:-1
position: 18676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18380-18676:-1:exon

PVK79_RS23415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518973
locus tag: PVK79_RS23415
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MESMIPINFLDKAERTFNDLGANVQVRTNSYSRFYNTKGRLVKKSDIAKIQKAGCLTLFTLSDNAIDITVHPANKDTVFEKAKSIFKEAQVVEIDIQS
SIO_010081: PVK79_RS23415
subclass of: SO_0000673
so part of: PVK79_RS23415
location: complement(18380..18676)
location: region:18380-18676:-1
so has part: feature:18380-18676:-1:exon

WP_138558954.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18380-18676:-1:exon

PVK79_RS23420
type: Gene
subclass of: SO_0000704
RO_0002162: 2518973
locus tag: PVK79_RS23420
so part of: sequence
location: complement(18834..19214)
location: region:18834-19214:-1
so has part: feature:18834-19214:-1:exon
subclass of: SO_0000010

position:18834:-1
position: 18834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19214:-1
position: 19214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18834-19214:-1:exon

PVK79_RS23420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518973
locus tag: PVK79_RS23420
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018981325.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLSITSEDKENQLKSYCQHWLSLLATNQFEDAEKLIDINNNYGVVWAESELKDAVHDYFGSDAPVSFQNENIANCYPEFLETDSGSLIFGFYLPANGEITDLTVEFEFVPIGNNNYAATINDVHVL
SIO_010081: PVK79_RS23420
subclass of: SO_0000673
so part of: PVK79_RS23420
location: complement(18834..19214)
location: region:18834-19214:-1
so has part: feature:18834-19214:-1:exon

WP_024592043.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18834-19214:-1:exon

PVK79_RS23425
type: Gene
subclass of: SO_0000704
RO_0002162: 2518973
locus tag: PVK79_RS23425
so part of: sequence
location: complement(19296..19730)
location: region:19296-19730:-1
so has part: feature:19296-19730:-1:exon
subclass of: SO_0000010

position:19296:-1
position: 19296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19730:-1
position: 19730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19296-19730:-1:exon

PVK79_RS23425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518973
locus tag: PVK79_RS23425
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKQFASEKLSFTNGFQAIPGFPSNGFRADGLLTDGNVVIALEVEVKQTHPDTNVGKYWLLSQYQAYEKVILFHVYTPEYTSYPWRLQLGQFYASKMAIELPFEYELVDQREAIDTNSSFEAVTRILEQRILGEFGVIAGKSQNA
SIO_010081: PVK79_RS23425
subclass of: SO_0000673
so part of: PVK79_RS23425
location: complement(19296..19730)
location: region:19296-19730:-1
so has part: feature:19296-19730:-1:exon

WP_063529658.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19296-19730:-1:exon

PVK79_RS23430
type: Gene
subclass of: SO_0000704
RO_0002162: 2518973
locus tag: PVK79_RS23430
so part of: sequence
location: complement(19880..20245)
location: region:19880-20245:-1
so has part: feature:19880-20245:-1:exon
subclass of: SO_0000010

position:19880:-1
position: 19880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20245:-1
position: 20245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19880-20245:-1:exon

PVK79_RS23430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518973
locus tag: PVK79_RS23430
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011846274.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glyoxalase superfamily protein
translation: MEFQTIPIMRIFDEDKAKEFYLGFLGMELDWEHRFEDGYPIYMQVSLGDFVLHLSEHSGDCTPGSKVFVNVSNLDQLFAQVTAKPYKYNKPSIEDAPWGARCFTVTDPFSNRILFNESADT
SIO_010081: PVK79_RS23430
subclass of: SO_0000673
so part of: PVK79_RS23430
location: complement(19880..20245)
location: region:19880-20245:-1
so has part: feature:19880-20245:-1:exon

WP_024592045.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19880-20245:-1:exon

PVK79_RS23435
type: Gene
subclass of: SO_0000704
RO_0002162: 2518973
gene: ltrA
locus tag: PVK79_RS23435
so part of: sequence
location: 21122..22600
location: region:21122-22600:1
so has part: feature:21122-22600:1:exon
subclass of: SO_0000010

position:21122:1
position: 21122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22600:1
position: 22600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21122-22600:1:exon

PVK79_RS23435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518973
gene: ltrA
locus tag: PVK79_RS23435
EC number: 2.7.7.49
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019282658.1
GO function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0000373 - Group II intron splicing [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: group II intron reverse transcriptase/maturase
translation: MMISKEISASPDSAQWQSINWKTVESHVLKLQMRIAKATRESKHGKAKALQWILTHSHSAKLLAVKRVSQNKGSKTPGIDGVIWNTDTRRMKAVNQLSRKAYQAKPLKRIYIPKKNGKLRPLGIPCMVDRALQALHLLALEPVSETLADPNSYGFRRNRSTADAIAQCFLCLSKKQSAQWVLEGDIKACFDKIGHQWLMNNIAVDKRMLEQWLKSGFMDKGLFYRTDEGTPQGGIISPTLMLMTLAGLEQRIKSTALKNGARANFIGYADDFVVTCTSKDVLENDIKPLIADFLAHRGLTLSEEKTHITHISRGFDFLGFNHRKYKGKLLIKPSKSNTLIFLSNLRELIKKHATTPVNDLIKLINPKLRGWSNYYRHCVAKQVFGYVSHKLFLALWHWAKRRHPTKSKTWIAMKYFINRRGQWQFHGWQKSMNMNMDCQFNLFQIAKVPIERHVKIRSEATPFDPLYQEYLAKRKAKRQCRNSWNEPNLAAL
SIO_010081: PVK79_RS23435
subclass of: SO_0000673
so part of: PVK79_RS23435
location: 21122..22600
location: region:21122-22600:1
so has part: feature:21122-22600:1:exon

WP_257324080.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21122-22600:1:exon