Pseudoalteromonas rhizosphaerae strain hCg-42 plasmid p1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.
Alterins biosynthetic gene cluster identification from Pseudoalteromonas rhizosphaerae hCg-6 : a genomic and transcriptomic study
Submitted (16-FEB-2023) LBCM, Universite de Bretagne Occidentale, 6 rue de l'Universite, Quimper 29334, France
REFSEQ INFORMATION: The reference sequence is identical to\nCP118497.1.\nBacteria and source DNA available from Yannick Fleury, LBCM, UBO,\nFrance.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. v0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 278.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/28/2023 16:25:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,691\nCDSs (total) :: 4,555\nGenes (coding) :: 4,484\nCDSs (with protein) :: 4,484\nGenes (RNA) :: 136\nrRNAs :: 10, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 10, 9, 9 (5S, 16S, 23S)\ntRNAs :: 103\nncRNAs :: 5\nPseudo Genes (total) :: 71\nCDSs (without protein) :: 71\nPseudo Genes (ambiguous residues) :: 0 of 71\nPseudo Genes (frameshifted) :: 30 of 71\nPseudo Genes (incomplete) :: 41 of 71\nPseudo Genes (internal stop) :: 21 of 71\nPseudo Genes (multiple problems) :: 19 of 71\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005477174.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005477284.1
COORDINATES: similar to AA sequence:RefSeq:WP_016807537.1
COORDINATES: similar to AA sequence:RefSeq:WP_020196412.1
COORDINATES: similar to AA sequence:RefSeq:WP_019029862.1
outer membrane lipoprotein-sorting protein
COORDINATES: similar to AA sequence:RefSeq:WP_019621427.1
COORDINATES: similar to AA sequence:RefSeq:WP_002961745.1
ligand-binding sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_008169150.1
COORDINATES: similar to AA sequence:RefSeq:WP_004589456.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018981325.1
COORDINATES: similar to AA sequence:RefSeq:WP_011846274.1
COORDINATES: similar to AA sequence:RefSeq:WP_019282658.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase