Duncaniella dubosii strain H5 plasmid pH5-4.
type: Entry
definition: Duncaniella dubosii strain H5 plasmid pH5-4.
sequence version: NZ_CP039400.1
sequence date: 2022-10-06
sequence: sequence
division: CON
label: NZ_CP039400.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN11032487
keyword: RefSeq
source: Duncaniella dubosii
organism: Duncaniella dubosii
taxonomy: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Muribaculaceae; Duncaniella.
reference: 1
references: 32250242
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP039400.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.8\nAssembly Name :: MuDubo_H5_1.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 317.98x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/06/2022 04:05:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,339\nCDSs (total) :: 3,271\nGenes (coding) :: 3,086\nCDSs (with protein) :: 3,086\nGenes (RNA) :: 68\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 3\nPseudo Genes (total) :: 185\nCDSs (without protein) :: 185\nPseudo Genes (ambiguous residues) :: 0 of 185\nPseudo Genes (frameshifted) :: 142 of 185\nPseudo Genes (incomplete) :: 55 of 185\nPseudo Genes (internal stop) :: 5 of 185\nPseudo Genes (multiple problems) :: 17 of 185\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 15511
topology: linear
so has quality: SO_0000987
location: 1..15511
location: region:1-15511:1
RO_0002162: 2518971

NZ_CP039400
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN11032487
type: BioSample
SIO_000068: biosample

1
title: Cultivation and description of Duncaniella dubosii sp. nov., Duncaniella freteri sp. nov. and emended description of the species Duncaniella muris
author: Miyake, S.
author: Ding, Y.
author: Soh, M.
author: Low, A.
author: Seedorf, H.
journal: Int J Syst Evol Microbiol
volume: 70
issue: 5
pages: 3105-3110
year: 2020
pubmed: 32250242

32250242
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Miyake, S.
author: Ding, Y.
author: Low, A.
author: Soh, M.
author: Seedorf, H.
journal: Submitted (28-FEB-2019) Henning Seedorf Group, Temasek Life Sciences Laboratory Limited, 1 Research Link National University of Singapore Singapore, Singapore 117604, Singapore

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15511:1
position: 15511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15511:1:source
so part of: sequence
organism: Duncaniella dubosii
mol type: genomic DNA
strain: H5
isolation source: feces
host: Mus musculus
culture collection: DSM:107170
culture collection: KCTC:15734
type material: type material of Duncaniella dubosii
plasmid: pH5-4
country: Singapore
collection date: Jan-2016

2518971
type: Taxonomy
SIO_000068: taxonomy

E7747_RS16355
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16355
old locus tag: E7747_16350
so part of: sequence
location: complement(274..2463)
location: region:274-2463:-1
so has part: feature:274-2463:-1:exon
subclass of: SO_0000010

position:274:-1
position: 274
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2463:-1
position: 2463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:274-2463:-1:exon

E7747_RS16355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16355
old locus tag: E7747_16350
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004336027.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: peptidase domain-containing ABC transporter
translation: MKKISIKLQKDAMKCGQTCLQMIAEYHGYIFADNLIESLCPATKEGVSLLALQETALLLGFKSICARMNICEISRITEPCILHWDQNHYVVLVEIKKNGSYYRIADPKKGISTCTRDEFLQHWISTTINGKHKGVVMLLTPTENIIRYTTETPKKRSNRFILGYITQFRKYFTQIILGLGLGCVLQLIMPFLTQAIVDVGIRHMDIGFIWLILLGELMIVVGRTATDFIRRWLLLHISMRINISLVSDFFIKLLKLPMSFFDTKLMGDLLQRIGDHTRVQNFLTGQVLNIIFTFLSFIIFGIVLFFYNPLIFGIFVTGSVCYGLWITSFLKKRKVLDYELFEQQAKNQNKTYQLITSMQEIKLQDCERRRRWEWEDTQADLFSVQMKSLKLQQTQEAGSIFINEVKNIMITVLAATAVINSQMTLGAMLAVQYIIGQLNSPVEQFMSFIYSLQDVKISLERINEIHEGRNEESDGNQVSKFDDGKSIDLSNVDFKYDPHALKKTLTDVSFDIPEGKVTAIVGASGSGKTTLIKLMLGYYPVMSGSISIAGRNINEYNLKWWRRHCGVVMQDGVIFSESIARNIAVDDGDIDIDRLEKAARIAHIHNYIMGLPLKYNTQIGRDGVGLSQGQKQRILIARAVYKNPDFIFLDEATNALDAKNERAIVENLDEFYKGRTVVVVAHRLSTVKNADQIIVLDRGKVVESGNHATLIEKKGAYYNLVKNQLELGN
SIO_010081: E7747_RS16355
subclass of: SO_0000673
so part of: E7747_RS16355
location: complement(274..2463)
location: region:274-2463:-1
so has part: feature:274-2463:-1:exon

WP_136417194.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:274-2463:-1:exon

E7747_RS16360
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16360
old locus tag: E7747_16355
so part of: sequence
location: complement(2463..3584)
location: region:2463-3584:-1
so has part: feature:2463-3584:-1:exon
subclass of: SO_0000010

position:3584:-1
position: 3584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2463-3584:-1:exon

E7747_RS16360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16360
old locus tag: E7747_16355
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLDDNTLIFNDSRSVDIMQRLLSSPKRTVHISEQDKTIPLISDTLKYFMGDLISSNIQPLQFESEINNISGIDAYHKSIIYSKYNIGSFISNCTLLVDMNKSDCSEYIAIQSGLSSCAESFQKRYPYAMNKSTIKTYIQGLVSINPNIVVNICGLDIDFLNDIIESFNARNLNIIISATTLNASPEILNTLINTNLSFSVLLNLPIDQINLPSNRNHISILTKITDKNDLEVYLNLLDSDYKVKFFPHLTSENLDFIKSLLNISEDELLGIPQKYQTIKINNLINSNLWGTIYLFSNGNIHYSLINDSNKIITFNNLYDGYKEDLINGTIDWIFNRNYTECKKCMYQRLCPPPNYIEHYLRCNNTLRCLIQDS
SIO_010081: E7747_RS16360
subclass of: SO_0000673
so part of: E7747_RS16360
location: complement(2463..3584)
location: region:2463-3584:-1
so has part: feature:2463-3584:-1:exon

WP_136417193.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2463-3584:-1:exon

E7747_RS16365
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16365
old locus tag: E7747_16360
so part of: sequence
location: complement(3665..5083)
location: region:3665-5083:-1
so has part: feature:3665-5083:-1:exon
subclass of: SO_0000010

position:3665:-1
position: 3665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5083:-1
position: 5083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3665-5083:-1:exon

E7747_RS16365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16365
old locus tag: E7747_16360
inference: COORDINATES: protein motif:HMM:TIGR04148.1
GO function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO process: GO:0031179 - peptide modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: radical SAM peptide maturase
translation: MEIIKSAAGHNYIYDRNTSYISLSSNYSPKENENQVNPHFAKKLDYLTRHGIISQEKSENNQYRLLTKKDIDDAIINTHQIILEVTDKCNLDCYYCGYGHFYDNYDARLNRDLPLDSFKTLYNYLKNLWETSYNKGCSYLRISFYGGEPLCNFQFIHDAVMYTRNNPILNKKIVFSMTTNAVLLDKYMDFLVENNFEILISLDGDKFNDSYRTFKNGTGSFDTVISNIDKLQSTYPIFFNKNIKFNSVLHNRNSVREANHFIYSRYNKRPMTNELNVFGIAKCKRAEFLKIFHSKTSEFNSMSNEEKQVYERQSPHIIQCEKWLFSTLMKTYSVNIFDALSDNFIESLDSNRQEIPTKTCIPFSRKIFVSVNGGIFPCERIGNEFNFGNISGNELYINYDNIIERYNQLFLKYITACKTCKAKDFCSVCVVSDINGYEVCNRAKPRNIEEIISFFEANPEEIREIIKNISII
SIO_010081: E7747_RS16365
subclass of: SO_0000673
so part of: E7747_RS16365
location: complement(3665..5083)
location: region:3665-5083:-1
so has part: feature:3665-5083:-1:exon

WP_136417192.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3665-5083:-1:exon

E7747_RS16370
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16370
old locus tag: E7747_16365
so part of: sequence
location: complement(5085..5960)
location: region:5085-5960:-1
so has part: feature:5085-5960:-1:exon
subclass of: SO_0000010

position:5085:-1
position: 5085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5960:-1
position: 5960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5085-5960:-1:exon

E7747_RS16370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16370
old locus tag: E7747_16365
inference: COORDINATES: protein motif:HMM:TIGR01200.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GLPGLI family protein
translation: MRILNALLASLMMLAGPAALAQVTVSYAMDTPTFTLAHEDTDKYETLDTCYLNVSYQFKYRNSEKDDSLSFDDIMDLQMGRYYNAFFSRDLRALDTQNTKELKSTMQFSTIPENYVGFDLLFNHKDSLTTVTNRLPYTSQVIEYSELSESPEWTYIPDEIATVMDYHCHVATCNYGGRNWKVYYTNDIPVPYGPWKLNGVKGLVLKAEDSENNFIFEAVGLTQKPQPIIRYDWSRKKMKKEDWKKFEQEMYKNAGAFVRNTGARILIMDNSEQGFHRLNEDWSQYYNPLEL
SIO_010081: E7747_RS16370
subclass of: SO_0000673
so part of: E7747_RS16370
location: complement(5085..5960)
location: region:5085-5960:-1
so has part: feature:5085-5960:-1:exon

WP_136417191.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5085-5960:-1:exon

E7747_RS16375
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16375
old locus tag: E7747_16370
so part of: sequence
location: complement(5971..8295)
location: region:5971-8295:-1
so has part: feature:5971-8295:-1:exon
subclass of: SO_0000010

position:5971:-1
position: 5971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8295:-1
position: 8295
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5971-8295:-1:exon

E7747_RS16375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16375
old locus tag: E7747_16370
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: Plug domain-containing protein
translation: MAFILFAVPMSAQQDDERLDSLIRTLELKEVVVTAKKIRQSGDTISYAASSYISKNDKTLEDLLRKMPGIEVKSDGQIIYNGQWINEFYIEGLDMLGSNYGVATKNIDAHDIGTVQILEDHQDVKMLQGVRRGAAPAMNIRLKQSAKGIWSSTFEGAIGSQPNISWDASASLMNFRRNAQNISVYKTNNIGVDLRPEINAPSTYTSSYGTGILYPETPSLSNKYTYRNTSHSLSVNQLLKLSEDKTFTFNLNYLFDKEKRNSNDETTYLSDSVARYIIKESNSSDIHQHFVGTHAVYKLNGKKIYLKNTLSANASFPKGEGLINDLILQKFSAHSIKIDDELKLNYKKHNGGIADASFHISYNDKKGLLNLPNNEFCQIVDQRSFNIDGSGSLIALSIPHFMFNLNGEVDASWQHANTNLDIDNQSMPDDQQTWQVGARVTPKIFWHYGQKFQWLIYVPAGFMYYKSDNQTWNYNKTFFSIRPYSNITYKPSDRLSFSLTTIGEESLPSAISIMVQKRFIDYRTTISNPGHIEATMNRTLKTAFNASYTNVLDMLFGSLALTYVQSRYGNSSGYDITDDIINYIRLPYSTNSRIWQLDQTFSKGFFRWNSKVSESFSIGMNNSEYYINDEIHEGKSKYLRAKLSYNATFTKWLSFETSNEYTLSKSFTDGKANDGTKHTFSNATSIILWPFKQLNVSPSVMFYNNNYSTSYRNNVFLNCNVEYTLGNTILSLQCSNLLNNDVFRRYNDNGIIRYSSEYRLRGRTIMVGIRIRIT
SIO_010081: E7747_RS16375
subclass of: SO_0000673
so part of: E7747_RS16375
location: complement(5971..8295)
location: region:5971-8295:-1
so has part: feature:5971-8295:-1:exon

WP_136417189.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5971-8295:-1:exon

E7747_RS16380
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16380
old locus tag: E7747_16375
so part of: sequence
location: complement(8655..9053)
location: region:8655-9053:-1
so has part: feature:8655-9053:-1:exon
subclass of: SO_0000010

position:8655:-1
position: 8655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9053:-1
position: 9053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8655-9053:-1:exon

E7747_RS16380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16380
old locus tag: E7747_16375
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: DUF421 domain-containing protein
translation: MKTIYYIQMLIMTLVMSSFPLSLAANSSSVSYTVTLQQQQKPTKDHNQQLDKDGQRMPARPVVVYISTTEGVYSSYFDIEDVISYSILDSNGQLSFSTYDVSDFINYLVSCNGVIGIQLELVEYNLEGWLQL
SIO_010081: E7747_RS16380
subclass of: SO_0000673
so part of: E7747_RS16380
location: complement(8655..9053)
location: region:8655-9053:-1
so has part: feature:8655-9053:-1:exon

WP_136417187.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8655-9053:-1:exon

E7747_RS16385
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16385
old locus tag: E7747_16380
so part of: sequence
location: complement(9189..10931)
location: region:9189-10931:-1
so has part: feature:9189-10931:-1:exon
subclass of: SO_0000010

position:9189:-1
position: 9189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10931:-1
position: 10931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9189-10931:-1:exon

E7747_RS16385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16385
old locus tag: E7747_16380
inference: COORDINATES: protein motif:HMM:NF024816.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tetratricopeptide repeat protein
translation: MILRTLLLLILSLTFTCCSNKPSDLRLSRVEGLLSESPKEAWDSLSAINYDLLSDADKHYYDFLSVKVADKAYLTHSSDSLILKVIDFEFKHQKNGRYPEALYYGGRVYSDLGDYPTSLHYFQDALKSLPSNSGNQELRCNILSQTGRLLTALSLYDEAIPYIHEALEINRHLQDTTNIIYGLQLLGGTYLRNSNYDLAEKYFKESIGFSVHQPSYHMAKSRMYLAAVKHKQGELDSALSYIRNTSEEVKPMVRNSVLGYASNIYLDAGILDTAYIYAKDLISNNDPTHKEIGYQVLLSPELRKYIEIDTLNQYISEYRTILESFYDENNMQLSINQQSLYNYQLHENQKAKAERLSNILKNWIVGFIFLAILLVLISLYFKNKSKNNIIELQQALANIEKLKLELVTSQLKQSSDIGQTIINQTEEIAPVITHNSPKSTEQELRECLKKELLTLYESASAQSSISPIILQSIAYQKIQEYIQEGKTIKESDVLWSEIEQIVLSSSPKFKINLNLLTLGNLTTIDLHTALLIKCGIKPSKMTTLLGRSNGAIVSRRETLCMKILDEKKGAKVIDAIIRSL
SIO_010081: E7747_RS16385
subclass of: SO_0000673
so part of: E7747_RS16385
location: complement(9189..10931)
location: region:9189-10931:-1
so has part: feature:9189-10931:-1:exon

WP_136417185.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9189-10931:-1:exon

E7747_RS16390
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16390
old locus tag: E7747_16385
so part of: sequence
location: complement(10928..11179)
location: region:10928-11179:-1
so has part: feature:10928-11179:-1:exon
subclass of: SO_0000010

position:10928:-1
position: 10928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11179:-1
position: 11179
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10928-11179:-1:exon

E7747_RS16390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16390
old locus tag: E7747_16385
inference: COORDINATES: protein motif:HMM:NF020835.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid partition protein ParG
translation: MAKNKILTVPQNGTQPATIPSPIDNMLAGTTSVETVTKTSNKRPTSFNIDQELQSRFKAVCATRGKSMSSVIEDFILGYISEQ
SIO_010081: E7747_RS16390
subclass of: SO_0000673
so part of: E7747_RS16390
location: complement(10928..11179)
location: region:10928-11179:-1
so has part: feature:10928-11179:-1:exon

WP_136417183.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10928-11179:-1:exon

E7747_RS16395
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16395
old locus tag: E7747_16390
so part of: sequence
location: complement(11252..11998)
location: region:11252-11998:-1
so has part: feature:11252-11998:-1:exon
subclass of: SO_0000010

position:11252:-1
position: 11252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11998:-1
position: 11998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11252-11998:-1:exon

E7747_RS16395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16395
old locus tag: E7747_16390
inference: COORDINATES: protein motif:HMM:NF018290.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MKAKIIAIANHKGGVGKTASVASIGAVLASRGKKVLMVDLDTQANLTRHFMENIPPRIIYHAIREQLNLPIYPIRENLDIVPSGLDMAGIDLELQMMFNRERVLKVLLDPFSTIYDYVLLDCPPALGLVTINALTAANKLIVPMKADLMSNYGLSMMDQFCVKMQVLNPGIHIDYIFFNIYEKGQTMTEAIETDVRSKYGDRVLSTVIRKNNDVSKAAFDFTDIVSFNPEANGAKDFQALVTELESKL
SIO_010081: E7747_RS16395
subclass of: SO_0000673
so part of: E7747_RS16395
location: complement(11252..11998)
location: region:11252-11998:-1
so has part: feature:11252-11998:-1:exon

WP_136417181.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11252-11998:-1:exon

E7747_RS16400
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16400
old locus tag: E7747_16395
so part of: sequence
location: 12315..13994
location: region:12315-13994:1
so has part: feature:12315-13994:1:exon
subclass of: SO_0000010

position:12315:1
position: 12315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13994:1
position: 13994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12315-13994:1:exon

E7747_RS16400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16400
old locus tag: E7747_16395
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSIDFSKVDLNNFDFDTLPADEYREFLQAWSDYHGRLNRISVDVLEQEFERKSDYLQCGEHYELSELYPDEFVELLFERKAFEQGEGIIPFEEVQSYEYQLWLKQKIRNKALRSESSNSDDVQSEKIDYSGYRMWRYNPVVFYKDGKKNRHRLLLKDDGESLSFLNGRDFAILSPVTYVGRTNSYRNARFLYAFAIDLDGVSMHEVRMLLRGMTTGVYPVANIIVNSGHGIHVYYLLKRPIEMFATRLDALNKMKRGLTKIVWLVSKLGAERAQVQSVVQGFRVPGTKTKFGKPIRAFWNRSAPMHTPEELNSFLGRAFGLSDEEIGQLTDKTPHNPSRVTLKEAQERWPEWYASRVIGRRRVGKKWQLNRGLYDWWLNILKDGQQVEVHHRYWCILTLVVYAVKCGVSRDEVLADAISLVPAFDRKTETVDNPFTEDDVKDAMRAYDEEYNKWPIRVIETTTGIRIERNKRNNRGREKHIKLMNFVRDNISYPDGNWRDGSGRKKATIDSSSHARLVKEWRTKNPDSKNKSLCARETGLSRPTVTRWWDSVVQELLNH
SIO_010081: E7747_RS16400
subclass of: SO_0000673
so part of: E7747_RS16400
location: 12315..13994
location: region:12315-13994:1
so has part: feature:12315-13994:1:exon

WP_136417179.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12315-13994:1:exon

E7747_RS16405
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16405
old locus tag: E7747_16400
so part of: sequence
location: 14189..14671
location: region:14189-14671:1
so has part: feature:14189-14671:1:exon
subclass of: SO_0000010

position:14189:1
position: 14189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14671:1
position: 14671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14189-14671:1:exon

E7747_RS16405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16405
old locus tag: E7747_16400
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDETEEEKVDLLAVRKSFEKDPRKVIEIEMNKDGIFSERTIYAMENTLNLSLLSPPEGPKLASEAEALFVLSKRGTVLETTEADFIEGYISPMVYRSSSMKFPQVPIAPKFVKMIKDMNAGSGVPHATITSTINNILDRFFSGYLLVSNRVKMGYGKVEE
SIO_010081: E7747_RS16405
subclass of: SO_0000673
so part of: E7747_RS16405
location: 14189..14671
location: region:14189-14671:1
so has part: feature:14189-14671:1:exon

WP_128708247.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14189-14671:1:exon

E7747_RS16735
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16735
so part of: sequence
location: 15053..15370
location: region:15053-15370:1
so has part: feature:15053-15370:1:exon
subclass of: SO_0000010

position:15053:1
position: 15053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15370:1
position: 15370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15053-15370:1:exon

E7747_RS16735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16735
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSHYTVCHYEKCYGPPVSYSTHIERKKADGTEHVPYNIKRRDLTRHNKEFIKEAREIGRSAAIEKKLDAVRHQKDADGNEYERKIRKGQICCIEIRIERIGRGYG
SIO_010081: E7747_RS16735
subclass of: SO_0000673
so part of: E7747_RS16735
location: 15053..15370
location: region:15053-15370:1
so has part: feature:15053-15370:1:exon

WP_168185398.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15053-15370:1:exon

E7747_RS16740
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16740
so part of: sequence
location: 15363..15482
location: region:15363-15482:1
so has part: feature:15363-15482:1:exon
subclass of: SO_0000010

position:15363:1
position: 15363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15482:1
position: 15482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15363-15482:1:exon

E7747_RS16740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16740
inference: COORDINATES: protein motif:HMM:NF013258.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid recombination protein
translation: MAEIIEQGRLMEWCRESIKWAQKEHGKENIVSAVLHMDE
SIO_010081: E7747_RS16740
subclass of: SO_0000673
so part of: E7747_RS16740
location: 15363..15482
location: region:15363-15482:1
so has part: feature:15363-15482:1:exon

WP_168185399.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15363-15482:1:exon