Duncaniella dubosii strain H5 plasmid pH5-3.
type: Entry
definition: Duncaniella dubosii strain H5 plasmid pH5-3.
sequence version: NZ_CP039399.1
sequence date: 2022-10-06
sequence: sequence
division: CON
label: NZ_CP039399.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN11032487
keyword: RefSeq
source: Duncaniella dubosii
organism: Duncaniella dubosii
taxonomy: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Muribaculaceae; Duncaniella.
reference: 1
references: 32250242
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP039399.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.8\nAssembly Name :: MuDubo_H5_1.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 317.98x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/06/2022 04:05:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,339\nCDSs (total) :: 3,271\nGenes (coding) :: 3,086\nCDSs (with protein) :: 3,086\nGenes (RNA) :: 68\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 3\nPseudo Genes (total) :: 185\nCDSs (without protein) :: 185\nPseudo Genes (ambiguous residues) :: 0 of 185\nPseudo Genes (frameshifted) :: 142 of 185\nPseudo Genes (incomplete) :: 55 of 185\nPseudo Genes (internal stop) :: 5 of 185\nPseudo Genes (multiple problems) :: 17 of 185\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 21348
topology: linear
so has quality: SO_0000987
location: 1..21348
location: region:1-21348:1
RO_0002162: 2518971

NZ_CP039399
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN11032487
type: BioSample
SIO_000068: biosample

1
title: Cultivation and description of Duncaniella dubosii sp. nov., Duncaniella freteri sp. nov. and emended description of the species Duncaniella muris
author: Miyake, S.
author: Ding, Y.
author: Soh, M.
author: Low, A.
author: Seedorf, H.
journal: Int J Syst Evol Microbiol
volume: 70
issue: 5
pages: 3105-3110
year: 2020
pubmed: 32250242

32250242
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Miyake, S.
author: Ding, Y.
author: Low, A.
author: Soh, M.
author: Seedorf, H.
journal: Submitted (28-FEB-2019) Henning Seedorf Group, Temasek Life Sciences Laboratory Limited, 1 Research Link National University of Singapore Singapore, Singapore 117604, Singapore

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

position:21348:1
position: 21348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21348:1:source
so part of: sequence
organism: Duncaniella dubosii
mol type: genomic DNA
strain: H5
isolation source: feces
host: Mus musculus
culture collection: DSM:107170
culture collection: KCTC:15734
type material: type material of Duncaniella dubosii
plasmid: pH5-3
country: Singapore
collection date: Jan-2016

2518971
type: Taxonomy
SIO_000068: taxonomy

E7747_RS16715
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16715
so part of: sequence
location: <1..511
location: region:1-511:1
so has part: feature:1-511:1:exon
subclass of: SO_0000010

position:511:1
position: 511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-511:1:exon

E7747_RS16715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16715
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 2
transl table: 11
product: hypothetical protein
translation: LDQNNFHRIRLTGEATLRNLKFPCQNFLPTIFTDDGAETWDKLIVHSRRYQRRLASDRVIENRHNISRNHRHDSTGIRSENGCRMPEHLIVSRHQHNQTLLAADCGDRLLFRSTEDSTRIRLRKSTVGATLRRYKDDKTKPQLVLNSLPTVPSMVTVSTGRYSESHFCS
SIO_010081: E7747_RS16715
subclass of: SO_0000673
so part of: E7747_RS16715
location: <1..511
location: region:1-511:1
so has part: feature:1-511:1:exon

WP_168185393.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-511:1:exon

E7747_RS16215
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16215
old locus tag: E7747_16210
so part of: sequence
location: 640..819
location: region:640-819:1
so has part: feature:640-819:1:exon
subclass of: SO_0000010

position:640:1
position: 640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:819:1
position: 819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:640-819:1:exon

E7747_RS16215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16215
old locus tag: E7747_16210
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKTLSASDSVAVAEGEVIDISVDNSMRRLLRRWDARGVVESERMRVFTPYFPLRTPLAT
SIO_010081: E7747_RS16215
subclass of: SO_0000673
so part of: E7747_RS16215
location: 640..819
location: region:640-819:1
so has part: feature:640-819:1:exon

WP_136417205.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:640-819:1:exon

E7747_RS16220
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16220
old locus tag: E7747_16215
so part of: sequence
location: 891..1154
location: region:891-1154:1
so has part: feature:891-1154:1:exon
subclass of: SO_0000010

position:891:1
position: 891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1154:1
position: 1154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:891-1154:1:exon

E7747_RS16220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16220
old locus tag: E7747_16215
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNGSVSNIKKALTSINHQQPLRLDFTLDGDTIEVNEIAGAVFAGAAFAESDTTGIFIAQESDNERAMQSSVETNASDTMATLVIRQT
SIO_010081: E7747_RS16220
subclass of: SO_0000673
so part of: E7747_RS16220
location: 891..1154
location: region:891-1154:1
so has part: feature:891-1154:1:exon

WP_136417207.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:891-1154:1:exon

E7747_RS16225
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16225
old locus tag: E7747_16220
so part of: sequence
location: 1135..1626
location: region:1135-1626:1
so has part: feature:1135-1626:1:exon
subclass of: SO_0000010

position:1135:1
position: 1135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1626:1
position: 1626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1135-1626:1:exon

E7747_RS16225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16225
old locus tag: E7747_16220
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSSVKRRSKYQCQGKQHIAYSNLMFRDFKGRLNVYKGAINLEQLTAATNVGGIDLNALYSAPSKEDASFAFGLESRISISSNSLNLSPRLTRLCPCSMESTESSMQHRATTRISDGMNIDIPTLKAALKLSGDSLVLIDEATFKKIGKWLMFKHKEKNVIDTV
SIO_010081: E7747_RS16225
subclass of: SO_0000673
so part of: E7747_RS16225
location: 1135..1626
location: region:1135-1626:1
so has part: feature:1135-1626:1:exon

WP_136417208.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1135-1626:1:exon

E7747_RS16230
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16230
old locus tag: E7747_16225
so part of: sequence
location: 1854..2060
location: region:1854-2060:1
so has part: feature:1854-2060:1:exon
subclass of: SO_0000010

position:1854:1
position: 1854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2060:1
position: 2060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1854-2060:1:exon

E7747_RS16230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16230
old locus tag: E7747_16225
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPKSVAIADTTRINLVREIGNIFRRGVRDANIGSLDFSGLPDSGTAATVAQPTPFHAEIHSISSRKDS
SIO_010081: E7747_RS16230
subclass of: SO_0000673
so part of: E7747_RS16230
location: 1854..2060
location: region:1854-2060:1
so has part: feature:1854-2060:1:exon

WP_136417210.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1854-2060:1:exon

E7747_RS16235
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16235
old locus tag: E7747_16230
so part of: sequence
location: 2243..2767
location: region:2243-2767:1
so has part: feature:2243-2767:1:exon
subclass of: SO_0000010

position:2243:1
position: 2243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2767:1
position: 2767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2243-2767:1:exon

E7747_RS16235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16235
old locus tag: E7747_16230
inference: COORDINATES: protein motif:HMM:NF024811.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HAD family hydrolase
translation: MTRCRTTPRHGTGLMTEAGVACTPEEFYLYEGRTGASTINALFQRAFGREATDEEIESLYRLKNEYFRELPPVKPMPGAADMLNTTLKETGIQRVLVTGSGQRSLIDRITADFPESSNEDKIITSRDVTHGKPHPEPFIKAMQLAHVRPSQAIVIENAPLGVEAVTAQELLQSE
SIO_010081: E7747_RS16235
subclass of: SO_0000673
so part of: E7747_RS16235
location: 2243..2767
location: region:2243-2767:1
so has part: feature:2243-2767:1:exon

WP_228449351.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2243-2767:1:exon

E7747_RS16240
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16240
old locus tag: E7747_16235
so part of: sequence
location: complement(3040..3222)
location: region:3040-3222:-1
so has part: feature:3040-3222:-1:exon
subclass of: SO_0000010

position:3040:-1
position: 3040
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3222:-1
position: 3222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3040-3222:-1:exon

E7747_RS16240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16240
old locus tag: E7747_16235
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MASDFLVAPWLMSPAQIFVSESNILISVARFDGYDRIAECESRKHFVFDMRIVIICTLEG
SIO_010081: E7747_RS16240
subclass of: SO_0000673
so part of: E7747_RS16240
location: complement(3040..3222)
location: region:3040-3222:-1
so has part: feature:3040-3222:-1:exon

WP_136417212.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3040-3222:-1:exon

E7747_RS16720
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16720
so part of: sequence
location: 3451..3588
location: region:3451-3588:1
so has part: feature:3451-3588:1:exon
subclass of: SO_0000010

position:3451:1
position: 3451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3588:1
position: 3588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3451-3588:1:exon

E7747_RS16720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16720
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: 3-dehydroquinate synthase
translation: MLSGYAEMLKHGLLSSENDYTELLGFDILDANLERLLPLLERASR
SIO_010081: E7747_RS16720
subclass of: SO_0000673
so part of: E7747_RS16720
location: 3451..3588
location: region:3451-3588:1
so has part: feature:3451-3588:1:exon

WP_168185392.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3451-3588:1:exon

E7747_RS16255
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16255
old locus tag: E7747_16250
so part of: sequence
location: 3679..4011
location: region:3679-4011:1
so has part: feature:3679-4011:1:exon
subclass of: SO_0000010

position:3679:1
position: 3679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4011:1
position: 4011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3679-4011:1:exon

E7747_RS16255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16255
old locus tag: E7747_16250
inference: COORDINATES: protein motif:HMM:NF013887.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHKGAPVPHGHAVAYGILVEMILSHSLESFPSEELYRYSRYLKEQGYGTPSITCDDYASLIEYMRHDKKNDTCDSINFTLLSSPGQVLIDRTASEAQILAAFDIFRDLME
SIO_010081: E7747_RS16255
subclass of: SO_0000673
so part of: E7747_RS16255
location: 3679..4011
location: region:3679-4011:1
so has part: feature:3679-4011:1:exon

WP_262710079.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3679-4011:1:exon

E7747_RS16260
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16260
old locus tag: E7747_16255
so part of: sequence
location: complement(4038..4637)
location: region:4038-4637:-1
so has part: feature:4038-4637:-1:exon
subclass of: SO_0000010

position:4038:-1
position: 4038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4637:-1
position: 4637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4038-4637:-1:exon

E7747_RS16260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16260
old locus tag: E7747_16255
inference: COORDINATES: protein motif:HMM:NF024957.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: porin family protein
translation: MDSYSEITDLNSSMGLAGMGLGVSVKFNLSSFIGLGTELNYLRNSGKINMAVTADGKPNVSNVFIKNSYRSLNIPVYVSFGFNVANNVRWNVDGGLYFDFGTSGSQKTTIYNATVNDLGQLVTAITNLKTDYYDNDKAYLNSYRNFDTGLHLATSIKFMDKISVGLRSQFGFRNVAQSNGIVKPTSHNIRLFATIGYVL
SIO_010081: E7747_RS16260
subclass of: SO_0000673
so part of: E7747_RS16260
location: complement(4038..4637)
location: region:4038-4637:-1
so has part: feature:4038-4637:-1:exon

WP_136417218.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4038-4637:-1:exon

E7747_RS16265
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16265
old locus tag: E7747_16260
so part of: sequence
location: 4991..5064
location: region:4991-5064:1
so has part: feature:4991-5064:1:exon
subclass of: SO_0000663

position:4991:1
position: 4991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5064:1
position: 5064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4991-5064:1:exon

E7747_RS16265
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 2518971
locus tag: E7747_RS16265
old locus tag: E7747_16260
product: tRNA-Arg
inference: COORDINATES: profile:tRNAscan-SE:2.0.9
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:5025..5027,aa:Arg,seq:acg)
SIO_010081: E7747_RS16265
subclass of: SO_0000673
so part of: E7747_RS16265
location: 4991..5064
location: region:4991-5064:1
so has part: feature:4991-5064:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4991-5064:1:exon

E7747_RS16270
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16270
old locus tag: E7747_16265
so part of: sequence
location: complement(5142..5645)
location: region:5142-5645:-1
so has part: feature:5142-5645:-1:exon
subclass of: SO_0000010

position:5142:-1
position: 5142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5645:-1
position: 5645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5142-5645:-1:exon

E7747_RS16270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16270
old locus tag: E7747_16265
inference: COORDINATES: protein motif:HMM:NF012798.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MFIFQCCVGCRVSDLMLLTTGNVVDGELNYVARKTREGRPVTIKVPLNRTAKIILERYADHDRDTLFPAVYSRMGYNRVIKDILRLAGITRKVVVIDPLTREAVCRRLYEVASSHMARRTFIGNIFKKFKDQNLVSELSGHAPGSHAFARYREIDTELKREMVAAID
SIO_010081: E7747_RS16270
subclass of: SO_0000673
so part of: E7747_RS16270
location: complement(5142..5645)
location: region:5142-5645:-1
so has part: feature:5142-5645:-1:exon

WP_136417220.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5142-5645:-1:exon

E7747_RS16275
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16275
old locus tag: E7747_16270
so part of: sequence
location: complement(5693..6403)
location: region:5693-6403:-1
so has part: feature:5693-6403:-1:exon
subclass of: SO_0000010

position:5693:-1
position: 5693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6403:-1
position: 6403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5693-6403:-1:exon

E7747_RS16275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16275
old locus tag: E7747_16270
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDKTDFCREESFADDGGNESSDYVLKLPDDGVRPGDVADYRVTVDSLARLKAYIEDSFCMMRRRTVEAGWLAETIERFHADEIPRLEEERTEVLGLIDAYMEITSVMDASESRAEAYALMRRSLARYEAHRRIKFPRFRLMSGRMNESCLRDIEKFMRKEHLMVRKYPQISQGAGLEGRTRPKGPNTINDRMKLLKAVMTWGVKTRRIPSNPFDTFVSGRMSTAHLSISPSMSVGG
SIO_010081: E7747_RS16275
subclass of: SO_0000673
so part of: E7747_RS16275
location: complement(5693..6403)
location: region:5693-6403:-1
so has part: feature:5693-6403:-1:exon

WP_136417222.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5693-6403:-1:exon

E7747_RS16280
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16280
old locus tag: E7747_16275
so part of: sequence
location: 7073..10042
location: region:7073-10042:1
so has part: feature:7073-10042:1:exon
subclass of: SO_0000010

position:7073:1
position: 7073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10042:1
position: 10042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7073-10042:1:exon

E7747_RS16280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16280
old locus tag: E7747_16275
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005935374.1
GO component: GO:0045203 - integral component of cell outer membrane [Evidence IEA]
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO process: GO:0071702 - organic substance transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SusC/RagA family TonB-linked outer membrane protein
translation: MTTKDVNITPGQKMNIVLDGTNMLDEVITVAYGTAKRSSFTGSASVLDASEIEQVQVTNPVDALKGKVSGVQINSNSGAPGNSSPSVLIRGISSINAETSPLIVLDGTPYDGGLDNISTQDIESMTVLKDAASNALYGARGANGVILITTKRGKQGNARVTLDAKWGQNSRAVQDYDVITSPALYYETFGRAVGNYAMNVGGYDEAKALAYANSNLITMLGYNVYTIPEGENMLVDGFKLNPNATLGNIYTAQSGEQYLLTPDSWSDAAYKNALRQEYNLSVSQGSDKGSFYASASYLNNEGITVNSGYERFTGRLAADTQAKDWLKVGANMSYTHYESKFNGDDGSSSSSGNIFAVNNVLAPIYPLYVRDAQGNILKDINGNTMYDYGDGMGLGLPSRPVFSQANPLSQNILDVRKYDGNAMTATGYAEIRFLRDFKFTTNNTVNLYEQRQTSVTNPFFGQYASSNGIVNKYSTRRIDYTYQQLLNWARQFGEHNVNVLLGHENYWNKYSYMYASRSNMLLPSNEELDGAVIENGSSSYQTDYNNEGWFGRVNYDYDSKYFGSVSLRRDASSRFDPEHRWGTFWSASAAWIINKEAFFQAPWVDMLKLKVSYGEQGNDNIGNFRYVNTYTIVNSGGQAAAQPNTLGNKNITWEKGGNLNYGVDFSFFNERLSGTVEGFYRKTSDMLFLFPLPPSYGYTSYYDNIGDMTNTGFELDLRGDIIRTRNFTWSANLNFTFYKNKITRLPEERKTMTVDGVDGYSSDSYFYGEGESLYTFRIKKFAGIDKETGESMWYMNERDADNKLTGNIVTTKTYGNADFYLCGTALPDAYGGFGTSFNTYGFDFAIDFTYQLGGQVYDGTYAGLMASPYGSSRGRAMHKDLLNAWTPENKNSSIPQMVYNDQYVASTSDRFLTSASYLALQNINFGYTLPSKATKKIDVEKIRFYLSCDNVAIWSKRKGLDPRQSITGSVTNAYYAPIRTISGGINISF
SIO_010081: E7747_RS16280
subclass of: SO_0000673
so part of: E7747_RS16280
location: 7073..10042
location: region:7073-10042:1
so has part: feature:7073-10042:1:exon

WP_262710076.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7073-10042:1:exon

E7747_RS17170
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS17170
so part of: sequence
location: 10060..10350
location: region:10060-10350:1
so has part: feature:10060-10350:1:exon
subclass of: SO_0000010

position:10060:1
position: 10060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10350:1
position: 10350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10060-10350:1:exon

E7747_RS17170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS17170
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKAIFKSTLLLAVASSLTFSSCIEEVYPTSNVTQDQLESSVKAGEAMMYAMSGFMVNWNTTGADWHGDFGYSSMMHIRDCMTGDMSVLASVSTNNQ
SIO_010081: E7747_RS17170
subclass of: SO_0000673
so part of: E7747_RS17170
location: 10060..10350
location: region:10060-10350:1
so has part: feature:10060-10350:1:exon

WP_228449353.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10060-10350:1:exon

E7747_RS16285
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16285
old locus tag: E7747_16280
so part of: sequence
location: 10428..11669
location: region:10428-11669:1
so has part: feature:10428-11669:1:exon
subclass of: SO_0000010

position:10428:1
position: 10428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11669:1
position: 11669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10428-11669:1:exon

E7747_RS16285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16285
old locus tag: E7747_16280
inference: COORDINATES: protein motif:HMM:NF025680.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RagB/SusD family nutrient uptake outer membrane protein
translation: MLACNKALGIYHADVEDDYSKGARATALTFRAMTYLDMARWYEFLPNNNTSAVNIDGNDVTNLTVPIVTENTTEEEARNNPRATRQEMFDFLLADLLYAEQYISNVSYGTRLLPDLGCVYGLLARLYTWVEDYPKAAEYADKAIKASGCTPLTQDAWTNPKSGFNSMDNSSWMWGLKFEKENDAVGTGICNWTSMMSPEAEYGYAAVGACPIIDANMYARISDTDFRKLSWITPGVTSLVNDFPLINEEDRGYYVNYFPYGTIKFRPGAGNGTDPNEGSATAVPVMRVEEMWFIYIEALAHTNPAQGKQELEKFMQTYRDPNYTCSASSLDEVVEEIVFQKRVELWGEGQALWDIKRLNYSVVRDYEGTNFYEDSRKNTVGRPAWMNMVIVQTEGNNNQAVAKWNNPDIPDNY
SIO_010081: E7747_RS16285
subclass of: SO_0000673
so part of: E7747_RS16285
location: 10428..11669
location: region:10428-11669:1
so has part: feature:10428-11669:1:exon

WP_262710080.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10428-11669:1:exon

E7747_RS16290
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16290
old locus tag: E7747_16285
so part of: sequence
location: complement(11862..12533)
location: region:11862-12533:-1
so has part: feature:11862-12533:-1:exon
subclass of: SO_0000010

position:11862:-1
position: 11862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12533:-1
position: 12533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11862-12533:-1:exon

E7747_RS16290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16290
old locus tag: E7747_16285
inference: COORDINATES: protein motif:HMM:NF016232.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding protein
translation: MKDLKGIRGKFYIASLIEEGEHEHQDFKFAISDARKIARSISAFANNGGGRLLVGVKDNGVIAGVRNEEDIYVIEQAAEMYCRPSQEIRVTAFRTEGDKTVLRIEIDRSPVRPVVVLEADGSRRAYYRVKDENILAPELMVRAWVASANSEGCVISFSTAEKSLVDMLDDGPVAVEDFMLSAHVSRASAEDTVIRLHSMGILDFHYNGKTFLLTRRNDPESEE
SIO_010081: E7747_RS16290
subclass of: SO_0000673
so part of: E7747_RS16290
location: complement(11862..12533)
location: region:11862-12533:-1
so has part: feature:11862-12533:-1:exon

WP_123614326.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11862-12533:-1:exon

E7747_RS16295
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16295
old locus tag: E7747_16290
pseudo: true
so part of: sequence
location: complement(12625..13108)
location: region:12625-13108:-1
so has part: feature:12625-13108:-1:exon
subclass of: SO_0000010

position:12625:-1
position: 12625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13108:-1
position: 13108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12625-13108:-1:exon

E7747_RS16295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16295
old locus tag: E7747_16290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005846071.1
GO function: GO:0005506 - iron ion binding [Evidence IEA]; GO:0043768 - S-ribosylhomocysteine lyase activity [Evidence IEA]
GO process: GO:0009372 - quorum sensing [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: S-ribosylhomocysteine lyase
SIO_010081: E7747_RS16295
subclass of: SO_0000673
so part of: E7747_RS16295
location: complement(12625..13108)
location: region:12625-13108:-1
so has part: feature:12625-13108:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12625-13108:-1:exon

E7747_RS16300
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16300
old locus tag: E7747_16295
so part of: sequence
location: complement(13190..13855)
location: region:13190-13855:-1
so has part: feature:13190-13855:-1:exon
subclass of: SO_0000010

position:13190:-1
position: 13190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13855:-1
position: 13855
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13190-13855:-1:exon

E7747_RS16300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16300
old locus tag: E7747_16295
EC number: 3.2.2.9
inference: COORDINATES: protein motif:HMM:NF004079.0
GO function: GO:0008782 - adenosylhomocysteine nucleosidase activity [Evidence IEA]; GO:0008930 - methylthioadenosine nucleosidase activity [Evidence IEA]
GO process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]; GO:0009164 - nucleoside catabolic process [Evidence IEA]; GO:0009116 - nucleoside metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 5'-methylthioadenosine/adenosylhomocysteine nucleosidase
translation: MKIGIIVAMQKELALILPLLSDSSTEVRGTVTYHCGHIGENEVAVMQCGIGKVNAAIGAVSLIDAFCPELVINTGVAAGAGDEVAVMDIVLADRLVHHDFWCIGEEWGHVPGCPLYFPARLPQIRENENVKLGLIASGELFISSKDEIDSIRGHFPDVMAVDMESAAIAQVCEQRGVPFMCLRVISDTPWCSHDNSRQYDDFWNEAPQKTFEIVKEIIFNA
SIO_010081: E7747_RS16300
subclass of: SO_0000673
so part of: E7747_RS16300
location: complement(13190..13855)
location: region:13190-13855:-1
so has part: feature:13190-13855:-1:exon

WP_136415670.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13190-13855:-1:exon

E7747_RS16305
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
gene: tatC
locus tag: E7747_RS16305
old locus tag: E7747_16300
pseudo: true
so part of: sequence
location: complement(13909..14702)
location: region:13909-14702:-1
so has part: feature:13909-14702:-1:exon
subclass of: SO_0000010

position:13909:-1
position: 13909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14702:-1
position: 14702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13909-14702:-1:exon

E7747_RS16305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
gene: tatC
locus tag: E7747_RS16305
old locus tag: E7747_16300
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008140199.1
GO component: GO:0005887 - integral component of plasma membrane [Evidence IEA]
GO process: GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: twin-arginine translocase subunit TatC
SIO_010081: E7747_RS16305
subclass of: SO_0000673
so part of: E7747_RS16305
location: complement(13909..14702)
location: region:13909-14702:-1
so has part: feature:13909-14702:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13909-14702:-1:exon

E7747_RS16310
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16310
old locus tag: E7747_16305
so part of: sequence
location: complement(14711..14956)
location: region:14711-14956:-1
so has part: feature:14711-14956:-1:exon
subclass of: SO_0000010

position:14711:-1
position: 14711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14956:-1
position: 14956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14711-14956:-1:exon

E7747_RS16310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16310
old locus tag: E7747_16305
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008760985.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: twin-arginine translocase TatA/TatE family subunit
translation: MIPCFLNFGTGELIIIFFAIILLFGAKRIPELARSMGKGISMFKQGMNEAVDQIKETPDAKPSSADSASDNTQTKNEADRK
SIO_010081: E7747_RS16310
subclass of: SO_0000673
so part of: E7747_RS16310
location: complement(14711..14956)
location: region:14711-14956:-1
so has part: feature:14711-14956:-1:exon

WP_123614329.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14711-14956:-1:exon

E7747_RS16315
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
gene: fabD
locus tag: E7747_RS16315
old locus tag: E7747_16310
so part of: sequence
location: 15160..16038
location: region:15160-16038:1
so has part: feature:15160-16038:1:exon
subclass of: SO_0000010

position:15160:1
position: 15160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16038:1
position: 16038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15160-16038:1:exon

E7747_RS16315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
gene: fabD
locus tag: E7747_RS16315
old locus tag: E7747_16310
EC number: 2.3.1.39
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010799941.1
GO function: GO:0004314 - [acyl-carrier-protein] S-malonyltransferase activity [Evidence IEA]
GO process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ACP S-malonyltransferase
translation: MKAFVFPGQGAQFVGMGKDLYDNNEVAKEMFEKANEILGFRITDLMFEGTDEDLRQTKVTQPAIFLHSVILAKTMGEEFAPSMVAGHSLGEFSALVAAGALSFEDGLRLVSARAQAMQKACELKPSTMAAVIALPDEKVEEICAEIPGVVVCANYNCPGQLVISGEEEAIDAACVKLKEAGAKRAMRLKVGGAFHSPCMEPARAELAEAIEKTEVHTPVVPVYQNVDARPHTDPAEIKANLVAQLTAPVRWTQSVQNMIADGADEFIELGPGKVLQGLVNKINREVATSGRQ
SIO_010081: E7747_RS16315
subclass of: SO_0000673
so part of: E7747_RS16315
location: 15160..16038
location: region:15160-16038:1
so has part: feature:15160-16038:1:exon

WP_136415674.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15160-16038:1:exon

E7747_RS16320
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16320
old locus tag: E7747_16315
so part of: sequence
location: 16134..17096
location: region:16134-17096:1
so has part: feature:16134-17096:1:exon
subclass of: SO_0000010

position:16134:1
position: 16134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17096:1
position: 17096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16134-17096:1:exon

E7747_RS16320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16320
old locus tag: E7747_16315
inference: COORDINATES: protein motif:HMM:NF021445.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphatidylglycerol lysyltransferase domain-containing protein
translation: MITPRQNAGYTTAVITARPRRESQLRFRPLTLSDVDKLRPFFSQACCRTCDFTVGGMFMWTDYFDYTYCIFNDTLFIKGVTEDDVTRPAFSIPVGKMGIEESVNILLEHCRREGCELIFSAVPEAYVAPLQALGAKSVEKLEGWSDYLYDAQALATLSGKKLNKKRNHVNRFEAENPGYTFEPLTPDLLPAVREFFNATHLPLSKPALADIERAQVMHVLDNLDAYGFEGAVLSTPSDGIVAFTLGEVKGDTLYTHIEKMNHEVVGAGETVNKLFAAMMTERQPGLIYINREEDVGDPGLRHAKESYHPSELLDKYNVTF
SIO_010081: E7747_RS16320
subclass of: SO_0000673
so part of: E7747_RS16320
location: 16134..17096
location: region:16134-17096:1
so has part: feature:16134-17096:1:exon

WP_168185302.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16134-17096:1:exon

E7747_RS16325
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
gene: metX
locus tag: E7747_RS16325
old locus tag: E7747_16320
pseudo: true
so part of: sequence
location: 17290..18301
location: region:17290-18301:1
so has part: feature:17290-18301:1:exon
subclass of: SO_0000010

position:17290:1
position: 17290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18301:1
position: 18301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17290-18301:1:exon

E7747_RS16325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
gene: metX
locus tag: E7747_RS16325
old locus tag: E7747_16320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019246457.1
GO function: GO:0004414 - homoserine O-acetyltransferase activity [Evidence IEA]
GO process: GO:0009086 - methionine biosynthetic process [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: homoserine O-acetyltransferase
SIO_010081: E7747_RS16325
subclass of: SO_0000673
so part of: E7747_RS16325
location: 17290..18301
location: region:17290-18301:1
so has part: feature:17290-18301:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17290-18301:1:exon

E7747_RS16330
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16330
old locus tag: E7747_16325
so part of: sequence
location: 18387..18896
location: region:18387-18896:1
so has part: feature:18387-18896:1:exon
subclass of: SO_0000010

position:18387:1
position: 18387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18896:1
position: 18896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18387-18896:1:exon

E7747_RS16330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16330
old locus tag: E7747_16325
inference: COORDINATES: protein motif:HMM:NF013088.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DMT family transporter
translation: MAAVSYGTNPLFAVPLYELGMDVSSVLFYRYVFAAMILGAIMWMRGDSFRLERRDLPLMVILGIFFALSSVLLFEAYNYMDVGLASTLLFVEPVFIALILWLFYREGFHCGPLSSIAICLAGVAFLCNRARGTCDGNRNHPRHILRALPMDSTWCSSTRAASAISPGRR
SIO_010081: E7747_RS16330
subclass of: SO_0000673
so part of: E7747_RS16330
location: 18387..18896
location: region:18387-18896:1
so has part: feature:18387-18896:1:exon

WP_228449355.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18387-18896:1:exon

E7747_RS16335
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16335
old locus tag: E7747_16330
so part of: sequence
location: 18912..19199
location: region:18912-19199:1
so has part: feature:18912-19199:1:exon
subclass of: SO_0000010

position:18912:1
position: 18912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19199:1
position: 19199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18912-19199:1:exon

E7747_RS16335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16335
old locus tag: E7747_16330
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFGLIVFAARTDFFNGCAACPAGWLPWACIIGISVIPTIVSLMTVAISIQCIGSVPVAILGALETHNRHHVGVLMFGEVLTVRAIIGIVLISAPS
SIO_010081: E7747_RS16335
subclass of: SO_0000673
so part of: E7747_RS16335
location: 18912..19199
location: region:18912-19199:1
so has part: feature:18912-19199:1:exon

WP_136417226.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18912-19199:1:exon

E7747_RS16340
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16340
old locus tag: E7747_16335
so part of: sequence
location: complement(19552..19863)
location: region:19552-19863:-1
so has part: feature:19552-19863:-1:exon
subclass of: SO_0000010

position:19552:-1
position: 19552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19863:-1
position: 19863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19552-19863:-1:exon

E7747_RS16340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16340
old locus tag: E7747_16335
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGGAFTFADGEEWITIGNCQYTDDMCGPLFSNPVSHGLSRFRNTNTAGLYRLVNPYGCAASPFKNYCKLSENYVVVNATDPSKLFFGDNPNAGFTTALIWAME
SIO_010081: E7747_RS16340
subclass of: SO_0000673
so part of: E7747_RS16340
location: complement(19552..19863)
location: region:19552-19863:-1
so has part: feature:19552-19863:-1:exon

WP_136417227.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19552-19863:-1:exon

E7747_RS16725
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16725
so part of: sequence
location: complement(20120..20257)
location: region:20120-20257:-1
so has part: feature:20120-20257:-1:exon
subclass of: SO_0000010

position:20120:-1
position: 20120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20257:-1
position: 20257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20120-20257:-1:exon

E7747_RS16725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16725
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLYKLFSAIGLIAAMSFTACTDEVDYTPAPEVNTPEYISLLRKR
SIO_010081: E7747_RS16725
subclass of: SO_0000673
so part of: E7747_RS16725
location: complement(20120..20257)
location: region:20120-20257:-1
so has part: feature:20120-20257:-1:exon

WP_168185396.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20120-20257:-1:exon

E7747_RS17325
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS17325
so part of: sequence
location: complement(20529..20663)
location: region:20529-20663:-1
so has part: feature:20529-20663:-1:exon
subclass of: SO_0000010

position:20529:-1
position: 20529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20663:-1
position: 20663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20529-20663:-1:exon

E7747_RS17325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS17325
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRIEEMYLIEAEAVAHSNPAQGKELLENFMNLSLSDIRLSRKRH
SIO_010081: E7747_RS17325
subclass of: SO_0000673
so part of: E7747_RS17325
location: complement(20529..20663)
location: region:20529-20663:-1
so has part: feature:20529-20663:-1:exon

WP_262710078.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20529-20663:-1:exon

E7747_RS16730
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16730
so part of: sequence
location: complement(20674..20817)
location: region:20674-20817:-1
so has part: feature:20674-20817:-1:exon
subclass of: SO_0000010

position:20674:-1
position: 20674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20817:-1
position: 20817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20674-20817:-1:exon

E7747_RS16730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16730
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKAPAGSALSGLEPYISASKGASLMDMQVSSSVPATVWSTSVRQHLL
SIO_010081: E7747_RS16730
subclass of: SO_0000673
so part of: E7747_RS16730
location: complement(20674..20817)
location: region:20674-20817:-1
so has part: feature:20674-20817:-1:exon

WP_168185397.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20674-20817:-1:exon

E7747_RS16345
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16345
old locus tag: E7747_16340
so part of: sequence
location: complement(20814..20996)
location: region:20814-20996:-1
so has part: feature:20814-20996:-1:exon
subclass of: SO_0000010

position:20814:-1
position: 20814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20996:-1
position: 20996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20814-20996:-1:exon

E7747_RS16345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16345
old locus tag: E7747_16340
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGHPVYESNDEPVTNGQSANWGSFMMAESNLGYNGQYGTNMMIDAALYASIDNADWRKLS
SIO_010081: E7747_RS16345
subclass of: SO_0000673
so part of: E7747_RS16345
location: complement(20814..20996)
location: region:20814-20996:-1
so has part: feature:20814-20996:-1:exon

WP_136417229.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20814-20996:-1:exon

E7747_RS16350
type: Gene
subclass of: SO_0000704
RO_0002162: 2518971
locus tag: E7747_RS16350
old locus tag: E7747_16345
pseudo: true
so part of: sequence
location: complement(21039..>21348)
location: region:21039-21348:-1
so has part: feature:21039-21348:-1:exon
subclass of: SO_0000010

position:21039:-1
position: 21039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21348:-1
position: 21348
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21039-21348:-1:exon

E7747_RS16350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2518971
locus tag: E7747_RS16350
old locus tag: E7747_16345
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: incomplete; too short partial abutting assembly gap; missing N-terminus; Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
pseudo: true
codon start: 2
transl table: 11
product: hypothetical protein
SIO_010081: E7747_RS16350
subclass of: SO_0000673
so part of: E7747_RS16350
location: complement(21039..>21348)
location: region:21039-21348:-1
so has part: feature:21039-21348:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:21039-21348:-1:exon