Xylanimonas allomyrinae strain 2JSPR-7 plasmid unnamed1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Promicromonosporaceae; Xylanimonas.
Submitted (25-JAN-2019) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP035496.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS HGAP Assembly v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 195.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/05/2023 02:15:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,558\nCDSs (total) :: 3,496\nGenes (coding) :: 3,248\nCDSs (with protein) :: 3,248\nGenes (RNA) :: 62\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 248\nCDSs (without protein) :: 248\nPseudo Genes (ambiguous residues) :: 0 of 248\nPseudo Genes (frameshifted) :: 179 of 248\nPseudo Genes (incomplete) :: 81 of 248\nPseudo Genes (internal stop) :: 0 of 248\nPseudo Genes (multiple problems) :: 12 of 248\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_005053885.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013347385.1
COORDINATES: similar to AA sequence:RefSeq:WP_017585613.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011689724.1
COORDINATES: protein motif:HMM:NF024139.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013618.2
COORDINATES: protein motif:HMM:NF013073.2
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_011928014.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347398.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010142742.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005053824.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_015011451.1
COORDINATES: similar to AA sequence:RefSeq:WP_013884804.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347375.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347376.1
COORDINATES: similar to AA sequence:RefSeq:WP_003943371.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF013594.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013348052.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347379.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_013348054.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013347381.1
COORDINATES: similar to AA sequence:RefSeq:WP_011777311.1