Rhizobium rhododendri strain rho-6.2 plasmid unnamed2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
Genomics of the tumorigenes clade of the family Rhizobiaceae and description of Rhizobium rhododendri sp. nov
A Novel Group of Rhizobium tumorigenes-Like Agrobacteria Associated with Crown Gall Disease of Rhododendron and Blueberry
Submitted (02-FEB-2023) Institute for Plant Protection in Horticulture and Urban Green, Julius Kuehn-Institut, Federal Research Centre for Cultivated Plants (JKI), Messeweg 11-12, Braunschweig 38104, Germany
Submitted (10-JAN-2019) AG Smalla, Julius Kuehn-Institut, Federal Research Centre for Cultivated Plants (JKI), EP, Messeweg 11-12, Braunschweig 38104, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP117270.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2018\nAssembly Method :: HGAP v. RS_HGAP_Assembly.3 protocol\n included in SMRT Portal version 2.3.0\n using default parameters\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 209x\nSequencing Technology :: PacBio RSII and Illumina NextSeq 500\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/19/2023 11:51:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,672\nCDSs (total) :: 5,601\nGenes (coding) :: 5,404\nCDSs (with protein) :: 5,404\nGenes (RNA) :: 71\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 4\nPseudo Genes (total) :: 197\nCDSs (without protein) :: 197\nPseudo Genes (ambiguous residues) :: 0 of 197\nPseudo Genes (frameshifted) :: 96 of 197\nPseudo Genes (incomplete) :: 147 of 197\nPseudo Genes (internal stop) :: 38 of 197\nPseudo Genes (multiple problems) :: 71 of 197\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011578655.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012653006.1
COORDINATES: similar to AA sequence:RefSeq:WP_003538320.1
COORDINATES: similar to AA sequence:RefSeq:WP_012706655.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014765098.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654088.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558624.1
COORDINATES: similar to AA sequence:RefSeq:WP_018045200.1
histidine kinase dimerization/phosphoacceptor domain -containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010185188.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007535087.1
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015821265.1
COORDINATES: similar to AA sequence:RefSeq:WP_012557531.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748448.1
COORDINATES: similar to AA sequence:RefSeq:WP_017451237.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020010194.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003518202.1
COORDINATES: similar to AA sequence:RefSeq:WP_013762241.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003504513.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019200 - carbohydrate kinase activity [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003498880.1
COORDINATES: similar to AA sequence:RefSeq:WP_007558129.1
COORDINATES: similar to AA sequence:RefSeq:WP_014327462.1
COORDINATES: similar to AA sequence:RefSeq:WP_008217649.1
COORDINATES: similar to AA sequence:RefSeq:WP_003624941.1
COORDINATES: similar to AA sequence:RefSeq:WP_006116617.1
NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_010567307.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_006199370.1
acetyl-CoA hydrolase/transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010970320.1
GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]
GO:0006629 - lipid metabolic process [Evidence IEA]
glycerophosphodiester phosphodiesterase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007436672.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018099332.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011580339.1
COORDINATES: similar to AA sequence:RefSeq:WP_007775423.1
COORDINATES: similar to AA sequence:RefSeq:WP_003535739.1
COORDINATES: similar to AA sequence:RefSeq:WP_007798730.1
COORDINATES: similar to AA sequence:RefSeq:WP_018329231.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007538059.1
COORDINATES: similar to AA sequence:RefSeq:WP_004119250.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_018898038.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538051.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007164784.1
COORDINATES: similar to AA sequence:RefSeq:WP_008197183.1
COORDINATES: similar to AA sequence:RefSeq:WP_003550944.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_010916189.1
GO:0004673 - protein histidine kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013892885.1
COORDINATES: similar to AA sequence:RefSeq:WP_018181230.1
COORDINATES: similar to AA sequence:RefSeq:WP_015315617.1
GO:0030246 - carbohydrate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015917892.1
COORDINATES: similar to AA sequence:RefSeq:WP_006333474.1
COORDINATES: similar to AA sequence:RefSeq:WP_006201325.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013951808.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017077.2
COORDINATES: similar to AA sequence:RefSeq:WP_018245715.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018444825.1
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012556295.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480586.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007800161.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007691714.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006337240.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019860214.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006337238.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006337237.1
COORDINATES: similar to AA sequence:RefSeq:WP_014763231.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019860207.1
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007878547.1
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015316282.1
GO:1902495 - transmembrane transporter complex [Evidence IEA]
GO:0016301 - kinase activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012093447.1
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013529325.1
COORDINATES: similar to AA sequence:RefSeq:WP_009452243.1
COORDINATES: similar to AA sequence:RefSeq:WP_013892733.1
PTS glucitol/sorbitol transporter subunit IIC
COORDINATES: similar to AA sequence:RefSeq:WP_010911816.1
PTS glucitol/sorbitol transporter subunit IIB
COORDINATES: similar to AA sequence:RefSeq:WP_008596901.1
PTS glucitol/sorbitol transporter subunit IIA
COORDINATES: similar to AA sequence:RefSeq:WP_008124124.1
GO:0008965 - phosphoenolpyruvate-protein phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
phosphoenolpyruvate--protein phosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008596905.1
GO:0030246 - carbohydrate binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010911831.1
COORDINATES: similar to AA sequence:RefSeq:WP_004669442.1
thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_010911829.1
alpha-ketoacid dehydrogenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_013892721.1
GO:0006096 - glycolytic process [Evidence IEA]
dihydrolipoamide acetyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014989270.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_012654193.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007007229.1
GO:0016647 - oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017958428.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007689241.1
GO:1990107 - thiazole synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018855864.1
GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013761554.1
GO:0008902 - hydroxymethylpyrimidine kinase activity [Evidence IEA]; GO:0008972 - phosphomethylpyrimidine kinase activity [Evidence IEA]
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_013761157.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014133054.1
COORDINATES: similar to AA sequence:RefSeq:WP_015917686.1
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012440227.1
COORDINATES: similar to AA sequence:RefSeq:WP_004863104.1
COORDINATES: similar to AA sequence:RefSeq:WP_018897721.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654719.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007715405.1
COORDINATES: similar to AA sequence:RefSeq:WP_007715403.1
COORDINATES: similar to AA sequence:RefSeq:WP_011644399.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014189897.1
COORDINATES: similar to AA sequence:RefSeq:WP_006274319.1
RpiB/LacA/LacB family sugar-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_018896956.1
GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019995757.1
COORDINATES: similar to AA sequence:RefSeq:WP_004124029.1
GO:0009331 - glycerol-3-phosphate dehydrogenase complex [Evidence IEA]
GO:0004368 - glycerol-3-phosphate dehydrogenase (quinone) activity [Evidence IEA]
GO:0006072 - glycerol-3-phosphate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006468380.1
COORDINATES: similar to AA sequence:RefSeq:WP_019995754.1
COORDINATES: similar to AA sequence:RefSeq:WP_018896951.1
COORDINATES: similar to AA sequence:RefSeq:WP_012219772.1
COORDINATES: similar to AA sequence:RefSeq:WP_008874521.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003550839.1
D-ribose ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018065746.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013533079.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533078.1
COORDINATES: similar to AA sequence:RefSeq:WP_006204929.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
glycerol-3-phosphate dehydrogenase/oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_014199103.1
COORDINATES: similar to AA sequence:RefSeq:WP_018858688.1
COORDINATES: similar to AA sequence:RefSeq:WP_018117089.1
COORDINATES: similar to AA sequence:RefSeq:WP_019995741.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015419 - ABC-type sulfate transporter activity [Evidence IEA]; GO:0043199 - sulfate binding [Evidence IEA]
GO:0008272 - sulfate transport [Evidence IEA]
sulfate ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF014841.2
COORDINATES: similar to AA sequence:RefSeq:WP_007758462.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003515252.1
COORDINATES: similar to AA sequence:RefSeq:WP_015318411.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549868.1
COORDINATES: similar to AA sequence:RefSeq:WP_003575867.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017996363.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018897937.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012490006.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694403.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694405.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007694417.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694419.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694421.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008873553.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0042908 - xenobiotic transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006471978.1
zinc-binding alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012763234.1
COORDINATES: similar to AA sequence:RefSeq:WP_003553772.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958071.1
COORDINATES: similar to AA sequence:RefSeq:WP_011655185.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996438.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011655183.1
COORDINATES: similar to AA sequence:RefSeq:WP_004110481.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008552205.1
COORDINATES: protein motif:HMM:NF024629.2
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_007689782.1
COORDINATES: similar to AA sequence:RefSeq:WP_018897931.1
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_012113300.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003589839.1
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016734400.1
COORDINATES: similar to AA sequence:RefSeq:WP_018902500.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015916566.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
plastocyanin/azurin family copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015341708.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341707.1
COORDINATES: similar to AA sequence:RefSeq:WP_012652967.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341705.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047390.1
COORDINATES: similar to AA sequence:RefSeq:WP_016552272.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_015341702.1
COORDINATES: similar to AA sequence:RefSeq:WP_018497059.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957905.1
COORDINATES: similar to AA sequence:RefSeq:WP_007691883.1
COORDINATES: similar to AA sequence:RefSeq:WP_020486265.1
COORDINATES: similar to AA sequence:RefSeq:WP_007691888.1
COORDINATES: similar to AA sequence:RefSeq:WP_018858450.1
COORDINATES: similar to AA sequence:RefSeq:WP_008877095.1
COORDINATES: similar to AA sequence:RefSeq:WP_017268563.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019857131.1
COORDINATES: similar to AA sequence:RefSeq:WP_010915030.1
COORDINATES: similar to AA sequence:RefSeq:WP_015918021.1
COORDINATES: similar to AA sequence:RefSeq:WP_008877090.1
COORDINATES: similar to AA sequence:RefSeq:WP_015918019.1
COORDINATES: similar to AA sequence:RefSeq:WP_019997413.1
COORDINATES: similar to AA sequence:RefSeq:WP_008877087.1
COORDINATES: similar to AA sequence:RefSeq:WP_007628048.1
COORDINATES: similar to AA sequence:RefSeq:WP_018495632.1
COORDINATES: similar to AA sequence:RefSeq:WP_006469985.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018115951.1
COORDINATES: protein motif:HMM:NF023338.2
COORDINATES: protein motif:HMM:NF013739.2
COORDINATES: similar to AA sequence:RefSeq:WP_020813389.1
COORDINATES: similar to AA sequence:RefSeq:WP_018115942.1
GO:0003934 - GTP cyclohydrolase I activity [Evidence IEA]
GO:0042559 - pteridine-containing compound biosynthetic process [Evidence IEA]; GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006724385.1
COORDINATES: similar to AA sequence:RefSeq:WP_019895337.1
COORDINATES: similar to AA sequence:RefSeq:WP_020179426.1
COORDINATES: similar to AA sequence:RefSeq:WP_007067323.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003540970.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_018447094.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653544.1
COORDINATES: similar to AA sequence:RefSeq:WP_018485719.1
COORDINATES: similar to AA sequence:RefSeq:WP_007701150.1
COORDINATES: similar to AA sequence:RefSeq:WP_004669617.1
COORDINATES: protein motif:HMM:NF016221.2
COORDINATES: similar to AA sequence:RefSeq:WP_004669619.1
GO:0031966 - mitochondrial membrane [Evidence IEA]
GO:0033617 - mitochondrial cytochrome c oxidase assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018063642.1
COORDINATES: similar to AA sequence:RefSeq:WP_018902423.1
COORDINATES: similar to AA sequence:RefSeq:WP_003548916.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
GO:0019619 - 3,4-dihydroxybenzoate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003564086.1
COORDINATES: similar to AA sequence:RefSeq:WP_003519796.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018073040.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501617.1
amino acid ABC transporter permease/ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007822016.1
COORDINATES: similar to AA sequence:RefSeq:WP_013894209.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003595389.1
GO:0046873 - metal ion transmembrane transporter activity [Evidence IEA]
GO:0030001 - metal ion transport [Evidence IEA]
magnesium transporter CorA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012489683.1
COORDINATES: similar to AA sequence:RefSeq:WP_007788711.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007788713.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018516815.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576315.1
COORDINATES: similar to AA sequence:RefSeq:WP_020046896.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012557612.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003550583.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0008753 - NADPH dehydrogenase (quinone) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003550581.1
COORDINATES: similar to AA sequence:RefSeq:WP_018896962.1
GO:0032955 - regulation of division septum assembly [Evidence IEA]
cell division topological specificity factor MinE
COORDINATES: similar to AA sequence:RefSeq:WP_003506498.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0000918 - division septum site selection [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018896960.1
GO:0004857 - enzyme inhibitor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007162330.1
COORDINATES: similar to AA sequence:RefSeq:WP_017960988.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672098.1
COORDINATES: similar to AA sequence:RefSeq:WP_019996831.1
GO:0006470 - protein dephosphorylation [Evidence IEA]
protein-tyrosine phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007534255.1
COORDINATES: similar to AA sequence:RefSeq:WP_007764432.1
YihY/virulence factor BrkB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018323650.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020809641.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015342967.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674672.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_018496290.1
COORDINATES: similar to AA sequence:RefSeq:WP_007800110.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572290.1
COORDINATES: similar to AA sequence:RefSeq:WP_008529974.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047865.1
COORDINATES: protein motif:HMM:NF014643.2
GO:0110001 - toxin-antitoxin complex [Evidence IEA]
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_003572279.1
COORDINATES: similar to AA sequence:RefSeq:WP_015917674.1
COORDINATES: similar to AA sequence:RefSeq:WP_006466997.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008347817.1
D-2-hydroxyacid dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018210082.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003910 - DNA ligase (ATP) activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018900689.1
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: protein motif:HMM:NF022384.2
COORDINATES: similar to AA sequence:RefSeq:WP_012758520.1
GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]; GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
glutamine synthetase beta-grasp domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007703707.1
GO:0052621 - diguanylate cyclase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_012061319.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559040.1
GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015340680.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_012452115.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007698035.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736793.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694174.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003548304.1
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Cu(I)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017961786.1
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020047113.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003589395.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247053.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018043690.1
COORDINATES: similar to AA sequence:RefSeq:WP_019565597.1
COORDINATES: similar to AA sequence:RefSeq:WP_018902587.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694205.1
COORDINATES: protein motif:HMM:NF012703.2
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF023857.2
COORDINATES: similar to AA sequence:RefSeq:WP_007795674.1
GO:0050131 - N-methyl-L-amino-acid oxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018497026.1
GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]
GO:0006548 - histidine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007536094.1
COORDINATES: similar to AA sequence:RefSeq:WP_007795665.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015837 - amine transport [Evidence IEA]
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012555285.1
COORDINATES: similar to AA sequence:RefSeq:WP_018482975.1
COORDINATES: similar to AA sequence:RefSeq:WP_007823983.1
COORDINATES: similar to AA sequence:RefSeq:WP_012757009.1
COORDINATES: similar to AA sequence:RefSeq:WP_003563391.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448832.1
GO:0050480 - imidazolonepropionase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008531694.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555293.1
GO:0050129 - N-formylglutamate deformylase activity [Evidence IEA]
GO:0019557 - histidine catabolic process to glutamate and formate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002965715.1
GO:0016153 - urocanate hydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008874918.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017963456.1
COORDINATES: similar to AA sequence:RefSeq:WP_003582078.1
COORDINATES: similar to AA sequence:RefSeq:WP_012652798.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012652797.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_016969090.1
COORDINATES: protein motif:HMM:NF013179.2
COORDINATES: similar to AA sequence:RefSeq:WP_006336642.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016555013.1
GO:0020037 - heme binding [Evidence IEA]; GO:0004833 - tryptophan 2,3-dioxygenase activity [Evidence IEA]
GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IEA]
tryptophan 2,3-dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004126865.1
COORDINATES: similar to AA sequence:RefSeq:WP_004117969.1
COORDINATES: similar to AA sequence:RefSeq:WP_016555956.1
COORDINATES: similar to AA sequence:RefSeq:WP_012650023.1
bifunctional diguanylate cyclase/phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_018246535.1
GO:0008740 - L-rhamnose isomerase activity [Evidence IEA]
GO:0019301 - rhamnose catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018497180.1
COORDINATES: similar to AA sequence:RefSeq:WP_020012057.1
bifunctional rhamnulose-1-phosphate aldolase/short-chain dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_011655152.1
COORDINATES: similar to AA sequence:RefSeq:WP_009363822.1
GO:0033296 - rhamnose binding [Evidence IEA]; GO:0015153 - rhamnose transmembrane transporter activity [Evidence IEA]
GO:0015762 - rhamnose transmembrane transport [Evidence IEA]
rhamnose ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015342604.1
COORDINATES: similar to AA sequence:RefSeq:WP_003547826.1
COORDINATES: similar to AA sequence:RefSeq:WP_018497176.1
COORDINATES: similar to AA sequence:RefSeq:WP_003547822.1
GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007535962.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653908.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012653907.1
GO:0047471 - maltose alpha-D-glucosyltransferase activity [Evidence IEA]
GO:0005991 - trehalose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018098267.1
GO:0003844 - 1,4-alpha-glucan branching enzyme activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA]; GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0005978 - glycogen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018323722.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007690702.1
COORDINATES: similar to AA sequence:RefSeq:WP_007690707.1
COORDINATES: similar to AA sequence:RefSeq:WP_018446178.1
adenine deaminase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004672476.1
COORDINATES: similar to AA sequence:RefSeq:WP_018242080.1
COORDINATES: similar to AA sequence:RefSeq:WP_017264439.1
COORDINATES: similar to AA sequence:RefSeq:WP_006203032.1
COORDINATES: similar to AA sequence:RefSeq:WP_018329757.1
COORDINATES: similar to AA sequence:RefSeq:WP_020397463.1
COORDINATES: protein motif:HMM:NF024854.2
COORDINATES: similar to AA sequence:RefSeq:WP_018495105.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_011869600.1