Rhizobium rhododendri strain rho-6.2 plasmid pTi6.2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
Genomics of the tumorigenes clade of the family Rhizobiaceae and description of Rhizobium rhododendri sp. nov
A Novel Group of Rhizobium tumorigenes-Like Agrobacteria Associated with Crown Gall Disease of Rhododendron and Blueberry
Submitted (02-FEB-2023) Institute for Plant Protection in Horticulture and Urban Green, Julius Kuehn-Institut, Federal Research Centre for Cultivated Plants (JKI), Messeweg 11-12, Braunschweig 38104, Germany
Submitted (10-JAN-2019) AG Smalla, Julius Kuehn-Institut, Federal Research Centre for Cultivated Plants (JKI), EP, Messeweg 11-12, Braunschweig 38104, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP117269.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2018\nAssembly Method :: HGAP v. RS_HGAP_Assembly.3 protocol\n included in SMRT Portal version 2.3.0\n using default parameters\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 209x\nSequencing Technology :: PacBio RSII and Illumina NextSeq 500\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/19/2023 11:51:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,672\nCDSs (total) :: 5,601\nGenes (coding) :: 5,404\nCDSs (with protein) :: 5,404\nGenes (RNA) :: 71\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 4\nPseudo Genes (total) :: 197\nCDSs (without protein) :: 197\nPseudo Genes (ambiguous residues) :: 0 of 197\nPseudo Genes (frameshifted) :: 96 of 197\nPseudo Genes (incomplete) :: 147 of 197\nPseudo Genes (internal stop) :: 38 of 197\nPseudo Genes (multiple problems) :: 71 of 197\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011983086.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012559809.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489922.1
COORDINATES: similar to AA sequence:RefSeq:WP_012757632.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012692.2
COORDINATES: protein motif:HMM:NF013276.2
GO:0030599 - pectinesterase activity [Evidence IEA]
GO:0042545 - cell wall modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875401.1
glycerophosphodiester phosphodiesterase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012335275.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:NF012235.2
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012738.2
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018482066.1
GO:0003824 - catalytic activity [Evidence IEA]
sugar phosphate isomerase/epimerase family protein
COORDINATES: protein motif:HMM:NF012673.2
GO:0046855 - inositol phosphate dephosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012442751.1
GO:0003725 - double-stranded RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009756430.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011088261.1
GO:0016787 - hydrolase activity [Evidence IEA]
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014432386.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653732.1
COORDINATES: similar to AA sequence:RefSeq:WP_007434746.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012706.2
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015918215.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF012703.2
COORDINATES: similar to AA sequence:RefSeq:WP_003521599.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF016330.2
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015157916.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017835.2
AcvB/VirJ family lysyl-phosphatidylglycerol hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_007674248.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012296.2
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: protein motif:HMM:NF024867.2
COORDINATES: protein motif:HMM:NF037255.2
COORDINATES: protein motif:HMM:NF015210.2
COORDINATES: similar to AA sequence:RefSeq:WP_018240331.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
DpnII family type II restriction endonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_018240332.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0032775 - DNA methylation on adenine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012652552.1
COORDINATES: similar to AA sequence:RefSeq:WP_015916861.1
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: similar to AA sequence:RefSeq:WP_015928529.1
COORDINATES: similar to AA sequence:RefSeq:WP_019964961.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF023031.2
COORDINATES: similar to AA sequence:RefSeq:WP_012973766.1
COORDINATES: similar to AA sequence:RefSeq:WP_018859460.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484142.1
COORDINATES: similar to AA sequence:RefSeq:WP_011983061.1
COORDINATES: protein motif:HMM:NF013077.2
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007688845.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014329129.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755305.1
COORDINATES: similar to AA sequence:RefSeq:WP_015918097.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015821555.1
COORDINATES: protein motif:HMM:NF012739.2
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_015340771.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006310140.1
GO:0050380 - undecaprenyl-diphosphatase activity [Evidence IEA]
GO:0016311 - dephosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007421684.1
COORDINATES: similar to AA sequence:RefSeq:WP_009614300.1
COORDINATES: similar to AA sequence:RefSeq:WP_018098185.1
dual specificity protein phosphatase family protein
COORDINATES: protein motif:HMM:NF013718.2
COORDINATES: similar to AA sequence:RefSeq:WP_007915668.1
COORDINATES: similar to AA sequence:RefSeq:WP_019862158.1
COORDINATES: similar to AA sequence:RefSeq:WP_007827204.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018859086.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030642.1
COORDINATES: similar to AA sequence:RefSeq:WP_008828631.1
COORDINATES: similar to AA sequence:RefSeq:WP_004107373.1
COORDINATES: similar to AA sequence:RefSeq:WP_009619982.1
COORDINATES: similar to AA sequence:RefSeq:WP_004107367.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019690488.1
COORDINATES: similar to AA sequence:RefSeq:WP_014899387.1
COORDINATES: similar to AA sequence:RefSeq:WP_018899725.1
COORDINATES: protein motif:HMM:NF024629.2
COORDINATES: similar to AA sequence:RefSeq:WP_019963196.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671758.1
COORDINATES: similar to AA sequence:RefSeq:WP_019333053.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003521871.1
COORDINATES: similar to AA sequence:RefSeq:WP_008050574.1
COORDINATES: similar to AA sequence:RefSeq:WP_002972037.1
COORDINATES: similar to AA sequence:RefSeq:WP_003521869.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014494584.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:YP_005226959.1
COORDINATES: similar to AA sequence:RefSeq:WP_008373049.1
GO:0016020 - membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family
COORDINATES: similar to AA sequence:RefSeq:WP_007564099.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015342365.1
COORDINATES: protein motif:HMM:NF014763.2
GO:0004673 - protein histidine kinase activity [Evidence IEA]
HWE histidine kinase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012489858.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551288.1
COORDINATES: similar to AA sequence:RefSeq:WP_018609954.1
COORDINATES: similar to AA sequence:RefSeq:WP_013209617.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612145.1
COORDINATES: similar to AA sequence:RefSeq:WP_002715503.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002713057.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875074.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014430.2
COORDINATES: similar to AA sequence:RefSeq:WP_007812691.1
COORDINATES: similar to AA sequence:RefSeq:WP_130785165.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240940.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012756584.1
COORDINATES: protein motif:HMM:NF019121.2
COORDINATES: similar to AA sequence:RefSeq:WP_018446003.1
COORDINATES: similar to AA sequence:RefSeq:WP_012606126.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611908.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012881228.1
COORDINATES: similar to AA sequence:RefSeq:WP_013077983.1
COORDINATES: similar to AA sequence:RefSeq:WP_003518059.1
COORDINATES: similar to AA sequence:RefSeq:WP_011199109.1
COORDINATES: similar to AA sequence:RefSeq:WP_003151133.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_018310970.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018069689.1
COORDINATES: similar to AA sequence:RefSeq:WP_012452778.1
type II toxin-antitoxin system YhaV family toxin
COORDINATES: protein motif:HMM:NF027267.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0097351 - toxin sequestering activity [Evidence IEA]
GO:0001558 - regulation of cell growth [Evidence IEA]
type II toxin-antitoxin system PrlF family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_003513347.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010970262.1
GO:0004540 - ribonuclease activity [Evidence IEA]
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:NF019324.2
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_012881263.1
COORDINATES: similar to AA sequence:RefSeq:WP_020809657.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003467217.1
COORDINATES: similar to AA sequence:RefSeq:WP_014761797.1
COORDINATES: similar to AA sequence:RefSeq:WP_010972049.1
COORDINATES: protein motif:HMM:NF014898.2
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007043286.1
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_017183759.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase.; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_004129019.1
COORDINATES: similar to AA sequence:RefSeq:WP_017270750.1
COORDINATES: similar to AA sequence:RefSeq:WP_015886710.1
COORDINATES: similar to AA sequence:RefSeq:WP_018327668.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328351.1
COORDINATES: similar to AA sequence:RefSeq:WP_009465831.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018328349.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611156.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612018.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762590.1
COORDINATES: protein motif:HMM:NF017528.2
COORDINATES: similar to AA sequence:RefSeq:WP_012655097.1
COORDINATES: similar to AA sequence:RefSeq:WP_011426223.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006313950.1
COORDINATES: similar to AA sequence:RefSeq:WP_015343186.1
COORDINATES: similar to AA sequence:RefSeq:WP_006313953.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011426227.1
COORDINATES: similar to AA sequence:RefSeq:WP_015343184.1
COORDINATES: similar to AA sequence:RefSeq:WP_015343183.1
COORDINATES: similar to AA sequence:RefSeq:WP_006313958.1
GO:0004371 - glycerone kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012528062.1
COORDINATES: protein motif:HMM:NF019887.2
COORDINATES: similar to AA sequence:RefSeq:WP_019859983.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013094459.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611363.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427389.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017265718.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_076611226.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012649021.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649020.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010974920.1
The ATPase VirD4 is a core component of the VirB/VirD4 form of type IV secretion systems (T4SS), also known as type IVa secretion systems; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003523908.1
NAD/NADP octopine/nopaline dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015342638.1
COORDINATES: similar to AA sequence:RefSeq:WP_003523912.1
COORDINATES: similar to AA sequence:RefSeq:WP_003523913.1
COORDINATES: similar to AA sequence:RefSeq:WP_008972234.1
GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003523916.1
COORDINATES: similar to AA sequence:RefSeq:WP_018064271.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007774267.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343751.1
COORDINATES: protein motif:HMM:NF014381.2
COORDINATES: protein motif:HMM:NF014125.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611328.1,RefSeq:WP_076611730.1
COORDINATES: similar to AA sequence:RefSeq:WP_010661544.1
COORDINATES: similar to AA sequence:RefSeq:WP_012606173.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611730.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015759379.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612363.1
COORDINATES: protein motif:HMM:NF033545.0
COORDINATES: similar to AA sequence:RefSeq:WP_016558830.1
COORDINATES: protein motif:HMM:NF010411.0
two-component system VirA-like sensor kinase
COORDINATES: similar to AA sequence:RefSeq:WP_076611376.1
COORDINATES: similar to AA sequence:RefSeq:WP_009996984.1
COORDINATES: similar to AA sequence:RefSeq:WP_009996985.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611299.1
COORDINATES: similar to AA sequence:RefSeq:WP_004112894.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012653163.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF033819.0
COORDINATES: similar to AA sequence:RefSeq:WP_014762823.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019955077.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974915.1
type IV secretion system lytic transglycosylase VirB1
COORDINATES: similar to AA sequence:RefSeq:WP_003568048.1
COORDINATES: similar to AA sequence:RefSeq:WP_010891501.1
COORDINATES: similar to AA sequence:RefSeq:WP_018009783.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_011970877.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649029.1
COORDINATES: similar to AA sequence:RefSeq:WP_010891497.1
type IV secretion system lipoprotein VirB7
COORDINATES: similar to AA sequence:RefSeq:WP_019856525.1
COORDINATES: similar to AA sequence:RefSeq:WP_014528523.1
P-type conjugative transfer protein VirB9
COORDINATES: similar to AA sequence:RefSeq:WP_011427355.1
COORDINATES: similar to AA sequence:RefSeq:WP_003537101.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014528527.1
COORDINATES: protein motif:HMM:NF018839.2
COORDINATES: similar to AA sequence:RefSeq:WP_011427359.1
COORDINATES: protein motif:HMM:NF023610.2
COORDINATES: protein motif:HMM:NF018885.2
COORDINATES: protein motif:HMM:NF018377.2
COORDINATES: similar to AA sequence:RefSeq:WP_010187967.1
COORDINATES: similar to AA sequence:RefSeq:WP_018083879.1
COORDINATES: similar to AA sequence:RefSeq:WP_017965231.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807921.1
COORDINATES: similar to AA sequence:RefSeq:WP_019200281.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875060.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653035.1
COORDINATES: similar to AA sequence:RefSeq:WP_014761193.1
COORDINATES: similar to AA sequence:RefSeq:WP_010891505.1
COORDINATES: protein motif:HMM:NF015983.2
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020141837.1
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA]
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019816619.1
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: similar to AA sequence:RefSeq:WP_009762545.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654541.1
COORDINATES: similar to AA sequence:RefSeq:WP_015915221.1
COORDINATES: similar to AA sequence:RefSeq:WP_014500928.1
COORDINATES: similar to AA sequence:RefSeq:WP_007819134.1
COORDINATES: similar to AA sequence:RefSeq:WP_011685038.1
COORDINATES: similar to AA sequence:RefSeq:WP_016554801.1
COORDINATES: similar to AA sequence:RefSeq:WP_004432968.1
COORDINATES: similar to AA sequence:RefSeq:WP_013512615.1
COORDINATES: similar to AA sequence:RefSeq:WP_007583733.1
COORDINATES: similar to AA sequence:RefSeq:WP_010282792.1
COORDINATES: similar to AA sequence:RefSeq:WP_006331864.1
COORDINATES: similar to AA sequence:RefSeq:WP_008373015.1
COORDINATES: protein motif:HMM:NF013053.2
COORDINATES: similar to AA sequence:RefSeq:WP_018912858.1
COORDINATES: similar to AA sequence:RefSeq:WP_012384754.1
COORDINATES: similar to AA sequence:RefSeq:WP_010971316.1
COORDINATES: similar to AA sequence:RefSeq:WP_011349358.1
COORDINATES: protein motif:HMM:NF019204.2
COORDINATES: similar to AA sequence:RefSeq:WP_010875350.1
COORDINATES: similar to AA sequence:RefSeq:WP_015494728.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase.; TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003568294.1
COORDINATES: protein motif:HMM:NF024921.2
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012555090.1
COORDINATES: similar to AA sequence:RefSeq:WP_012650179.1
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004110586.1
COORDINATES: similar to AA sequence:RefSeq:WP_007597975.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010974498.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572236.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997593.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003577731.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016737019.1
COORDINATES: similar to AA sequence:RefSeq:WP_019994501.1
COORDINATES: similar to AA sequence:RefSeq:WP_018449072.1
COORDINATES: similar to AA sequence:RefSeq:WP_006204640.1
succinylglutamate desuccinylase/aspartoacylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018246878.1
COORDINATES: similar to AA sequence:RefSeq:WP_018210340.1
COORDINATES: similar to AA sequence:RefSeq:WP_015342994.1
COORDINATES: similar to AA sequence:RefSeq:WP_003503074.1
COORDINATES: similar to AA sequence:RefSeq:WP_007693942.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012761888.1
COORDINATES: similar to AA sequence:RefSeq:WP_018901329.1
COORDINATES: similar to AA sequence:RefSeq:WP_011339581.1
COORDINATES: similar to AA sequence:RefSeq:WP_007695350.1
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007757330.1
COORDINATES: similar to AA sequence:RefSeq:WP_004112820.1
COORDINATES: similar to AA sequence:RefSeq:WP_006472602.1
COORDINATES: similar to AA sequence:RefSeq:WP_003530010.1
GO:0003729 - mRNA binding [Evidence IEA]
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006331211.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: protein motif:HMM:NF020251.2
COORDINATES: similar to AA sequence:RefSeq:WP_012653146.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653145.1
COORDINATES: similar to AA sequence:RefSeq:WP_003517299.1
GO:0016746 - acyltransferase activity [Evidence IEA]
GO:0046677 - response to antibiotic [Evidence IEA]
COORDINATES: protein motif:HMM:NF024952.2
COORDINATES: protein motif:HMM:NF024803.2
COORDINATES: protein motif:HMM:NF014566.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0071586 - CAAX-box protein processing [Evidence IEA]
CPBP family intramembrane metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_012653144.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012653143.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653142.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653141.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_016919184.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129405.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653138.1
COORDINATES: similar to AA sequence:RefSeq:WP_016919183.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129407.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653135.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653134.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_012653133.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653132.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003501032.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653131.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653130.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653129.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653128.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653099.1
COORDINATES: similar to AA sequence:RefSeq:WP_007771386.1
COORDINATES: similar to AA sequence:RefSeq:WP_020092792.1
GO:0042586 - peptide deformylase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004129369.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653117.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_012653115.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653114.1
COORDINATES: similar to AA sequence:RefSeq:WP_012455880.1
COORDINATES: similar to AA sequence:RefSeq:WP_012329827.1
COORDINATES: similar to AA sequence:RefSeq:WP_008533787.1
COORDINATES: similar to AA sequence:RefSeq:WP_007760808.1
COORDINATES: similar to AA sequence:RefSeq:WP_014331813.1
COORDINATES: similar to AA sequence:RefSeq:WP_003515233.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003498944.1
GO:0016853 - isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010973786.1
COORDINATES: similar to AA sequence:RefSeq:WP_003504616.1
COORDINATES: similar to AA sequence:RefSeq:WP_003515237.1
COORDINATES: similar to AA sequence:RefSeq:WP_003504612.1
COORDINATES: similar to AA sequence:RefSeq:WP_008598669.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551769.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611590.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011654213.1
COORDINATES: protein motif:HMM:NF019126.2
COORDINATES: similar to AA sequence:RefSeq:WP_018484262.1
COORDINATES: protein motif:HMM:NF012967.2
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012553005.1
COORDINATES: similar to AA sequence:RefSeq:WP_008996327.1
COORDINATES: similar to AA sequence:RefSeq:WP_008536611.1