Pseudomonas viciae strain 11K1 plasmid p11K1, complete sequence.
type: Entry
definition: Pseudomonas viciae strain 11K1 plasmid p11K1, complete sequence.
sequence version: NZ_CP035089.1
sequence date: 2023-03-13
sequence: sequence
division: CON
label: NZ_CP035089.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN10724295
keyword: RefSeq
source: Pseudomonas viciae
organism: Pseudomonas viciae
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
reference: 1
references: 30941113
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP035089.1.\nBacteria and source DNA available from Liqun Zhang.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/13/2023 15:49:44\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,898\nCDSs (total) :: 5,814\nGenes (coding) :: 5,757\nCDSs (with protein) :: 5,757\nGenes (RNA) :: 84\nrRNAs :: 6, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 5, 5 (5S, 16S, 23S)\ntRNAs :: 64\nncRNAs :: 4\nPseudo Genes (total) :: 57\nCDSs (without protein) :: 57\nPseudo Genes (ambiguous residues) :: 0 of 57\nPseudo Genes (frameshifted) :: 27 of 57\nPseudo Genes (incomplete) :: 44 of 57\nPseudo Genes (internal stop) :: 7 of 57\nPseudo Genes (multiple problems) :: 17 of 57\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 22045
topology: circular
so has quality: SO_0000988
location: 1..22045
location: region:1-22045:1
RO_0002162: 2505979

NZ_CP035089
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN10724295
type: BioSample
SIO_000068: biosample

1
title: In silico and Genetic Analyses of Cyclic Lipopeptide Synthetic Gene Clusters in Pseudomonas sp. 11K1
author: Zhao, H.
author: Liu, Y.P.
author: Zhang, L.Q.
journal: Front Microbiol 10, 544 (2019)
pubmed: 30941113
comments: Publication Status: Online-Only

30941113
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Zhang, L.
journal: Submitted (11-JAN-2019) College of Plant Protection, China Agricultural University, No. 2 Yuanmingyuan West Road, Haidian, Beijing 100193, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22045:1
position: 22045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22045:1:source
so part of: sequence
organism: Pseudomonas viciae
mol type: genomic DNA
strain: 11K1
isolation source: rhizosphere
host: Vicia faba
type material: type strain of Pseudomonas viciae
plasmid: p11K1
country: China: Yunnan
collection date: 2014-09-30

2505979
type: Taxonomy
SIO_000068: taxonomy

EPZ47_RS29905
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS29905
old locus tag: EPZ47_29900
pseudo: true
so part of: sequence
location: 66..1367
location: region:66-1367:1
so has part: feature:66-1367:1:exon
subclass of: SO_0000010

position:66:1
position: 66
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1367:1
position: 1367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:66-1367:1:exon

EPZ47_RS29905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS29905
old locus tag: EPZ47_29900
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017709578.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: replication initiation protein
SIO_010081: EPZ47_RS29905
subclass of: SO_0000673
so part of: EPZ47_RS29905
location: 66..1367
location: region:66-1367:1
so has part: feature:66-1367:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:66-1367:1:exon

EPZ47_RS29910
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS29910
old locus tag: EPZ47_29905
so part of: sequence
location: complement(1809..2084)
location: region:1809-2084:-1
so has part: feature:1809-2084:-1:exon
subclass of: SO_0000010

position:1809:-1
position: 1809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2084:-1
position: 2084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1809-2084:-1:exon

EPZ47_RS29910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS29910
old locus tag: EPZ47_29905
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVKPKSQSAAGRQTATPDQIEKLASQLADKPYGHAKEKEAEIEKKAQAIGISLPPPMIEKLQDQALRNKRSGAGQKTVSGIIRELLEREGY
SIO_010081: EPZ47_RS29910
subclass of: SO_0000673
so part of: EPZ47_RS29910
location: complement(1809..2084)
location: region:1809-2084:-1
so has part: feature:1809-2084:-1:exon

WP_135848087.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1809-2084:-1:exon

EPZ47_RS29915
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS29915
old locus tag: EPZ47_29910
so part of: sequence
location: complement(2084..2722)
location: region:2084-2722:-1
so has part: feature:2084-2722:-1:exon
subclass of: SO_0000010

position:2722:-1
position: 2722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2084-2722:-1:exon

EPZ47_RS29915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS29915
old locus tag: EPZ47_29910
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018417334.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MITIVGCNKGGASKTTTATNVAVALAKAGKDVCLVDADPQRTSAKWHAEREAGDKKPNITLIEKRDNIASTLRSLDEKYEHVIVDVAGRNSRELVTGASVAHKILAPHQCSQFDLDTLEELQEQVIKIRDLNPGLIVQIYHAMASTNATVKAKERSEFLGYLQEFPEFTVLNAVGFYRKAYKDAASEGLSVLEIGNQAAADEVSALVAEVFG
SIO_010081: EPZ47_RS29915
subclass of: SO_0000673
so part of: EPZ47_RS29915
location: complement(2084..2722)
location: region:2084-2722:-1
so has part: feature:2084-2722:-1:exon

WP_135848088.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2084-2722:-1:exon

EPZ47_RS29920
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS29920
old locus tag: EPZ47_29915
so part of: sequence
location: complement(3258..3461)
location: region:3258-3461:-1
so has part: feature:3258-3461:-1:exon
subclass of: SO_0000010

position:3258:-1
position: 3258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3461:-1
position: 3461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3258-3461:-1:exon

EPZ47_RS29920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS29920
old locus tag: EPZ47_29915
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRNYHQSDSSFAEIMEGKAHRRDELMKAIQEADPAVLAPAAERLREVMRKKDPNQRRQRWDPPPLNE
SIO_010081: EPZ47_RS29920
subclass of: SO_0000673
so part of: EPZ47_RS29920
location: complement(3258..3461)
location: region:3258-3461:-1
so has part: feature:3258-3461:-1:exon

WP_135848089.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3258-3461:-1:exon

EPZ47_RS29925
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS29925
old locus tag: EPZ47_29920
so part of: sequence
location: complement(3660..3896)
location: region:3660-3896:-1
so has part: feature:3660-3896:-1:exon
subclass of: SO_0000010

position:3660:-1
position: 3660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3896:-1
position: 3896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3660-3896:-1:exon

EPZ47_RS29925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS29925
old locus tag: EPZ47_29920
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGKEKPGRTKSSKQALKAAVDALEWRLKKLEDAGDVVAANMARMHAATLKEEIKDVEVAERRKSIRLVIKNDSGTEAV
SIO_010081: EPZ47_RS29925
subclass of: SO_0000673
so part of: EPZ47_RS29925
location: complement(3660..3896)
location: region:3660-3896:-1
so has part: feature:3660-3896:-1:exon

WP_135848090.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3660-3896:-1:exon

EPZ47_RS29930
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS29930
old locus tag: EPZ47_29925
so part of: sequence
location: complement(4112..4354)
location: region:4112-4354:-1
so has part: feature:4112-4354:-1:exon
subclass of: SO_0000010

position:4112:-1
position: 4112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4354:-1
position: 4354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4112-4354:-1:exon

EPZ47_RS29930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS29930
old locus tag: EPZ47_29925
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKKRITREQVELLRMTLQELPPVNVTECIGDAMDDSEMISEAIIQLQARSYSLEQISEILKGNRMDLTPKPLRDYLNGI
SIO_010081: EPZ47_RS29930
subclass of: SO_0000673
so part of: EPZ47_RS29930
location: complement(4112..4354)
location: region:4112-4354:-1
so has part: feature:4112-4354:-1:exon

WP_135848091.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4112-4354:-1:exon

EPZ47_RS29935
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS29935
old locus tag: EPZ47_29930
so part of: sequence
location: 4686..4991
location: region:4686-4991:1
so has part: feature:4686-4991:1:exon
subclass of: SO_0000010

position:4686:1
position: 4686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4991:1
position: 4991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4686-4991:1:exon

EPZ47_RS29935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS29935
old locus tag: EPZ47_29930
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014003869.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix protein, CopG family
translation: MPFEVKGAEPLSEKIAVRLTKDEKERLREDAELAGLSVSELVRRRYFGRPIVANIDMVMVRELRRIGGLLKHVHTSSKGAYSRDTAQALNELTRQLERLEQ
SIO_010081: EPZ47_RS29935
subclass of: SO_0000673
so part of: EPZ47_RS29935
location: 4686..4991
location: region:4686-4991:1
so has part: feature:4686-4991:1:exon

WP_135848092.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4686-4991:1:exon

EPZ47_RS29940
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS29940
old locus tag: EPZ47_29935
so part of: sequence
location: 4988..6658
location: region:4988-6658:1
so has part: feature:4988-6658:1:exon
subclass of: SO_0000010

position:4988:1
position: 4988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6658:1
position: 6658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4988-6658:1:exon

EPZ47_RS29940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS29940
old locus tag: EPZ47_29935
inference: COORDINATES: protein motif:HMM:NF015397.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MIFKKVKADRVKSKAKHVRDLTDYIRDPAKTNPGEEVAYAGARGFFSSRHGTQQNEMIALALDAPKSKNPINHYILSWREGEYPTPEQIEQAVDVFLAELELSEHQAIYALHQDTDNQHLHIAVNRVHPDTLKVIKPNKGFDIEAGHRAIAKIESLQGWQSEQNARYQMEDGETSRRAVPGNEKQPSQPRRDMEVRTGEKSAERIGIEQAGPIIQAAASWSELHTRLNECGMRYERKGSGAVIWIGHVVVKASSADRGASLAALQKRLGKFQAADQVHDKAPTVDPVQLKPGERSPRWTEYIQARRTHYDSKNRAQIRMRERQQIERDAVAKQQREQRIELMAGNWKGRGDAMNALRSLIAAQQASTRANMTDRYRQQREDLQQYYRPFPSYEEWLRAEISDQAADQWRYRDNYSGEIPARLVGDIHVPPRLQDIRDYVGEIRGSDVVYRLAGADKASPAFLDRGRQVTVYDHNSDATILAAMQLSREKWGSFTVTGTDEYKAQCVRLAAQHGFTLNNPELQEALGVERELLNQDLPGVPQSGQGSSRTGRPPRMR
SIO_010081: EPZ47_RS29940
subclass of: SO_0000673
so part of: EPZ47_RS29940
location: 4988..6658
location: region:4988-6658:1
so has part: feature:4988-6658:1:exon

WP_135848093.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4988-6658:1:exon

EPZ47_RS29950
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS29950
old locus tag: EPZ47_29945
so part of: sequence
location: 7009..7317
location: region:7009-7317:1
so has part: feature:7009-7317:1:exon
subclass of: SO_0000010

position:7009:1
position: 7009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7317:1
position: 7317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7009-7317:1:exon

EPZ47_RS29950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS29950
old locus tag: EPZ47_29945
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008148190.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MISNPAPLSIAAGVLASSTLECVRRSPSYNHRGWQILDRWAFDSPGQLQRLEAEGEVILLGRLLEQQEIEHRVLSSDAALELRHLGLVEHEILALNEATTAL
SIO_010081: EPZ47_RS29950
subclass of: SO_0000673
so part of: EPZ47_RS29950
location: 7009..7317
location: region:7009-7317:1
so has part: feature:7009-7317:1:exon

WP_135848094.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7009-7317:1:exon

EPZ47_RS29955
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS29955
old locus tag: EPZ47_29950
so part of: sequence
location: complement(7393..7917)
location: region:7393-7917:-1
so has part: feature:7393-7917:-1:exon
subclass of: SO_0000010

position:7393:-1
position: 7393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7917:-1
position: 7917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7393-7917:-1:exon

EPZ47_RS29955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS29955
old locus tag: EPZ47_29950
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYVRVTLLQIAYFLGTVFFAVPAIAYALWDLKLLHAASATIALVLALGWIIGGWLMIKAWEKRLKQALTQKIRTVAPATFNPKVELESPHHLEYFGVDPDTDTVVIVDTKKGVARCEPIGFVQQWASEDNGRQAFMTLRFNDFALPALSIRVARGTLEDLKAKVHYVLNYRAAF
SIO_010081: EPZ47_RS29955
subclass of: SO_0000673
so part of: EPZ47_RS29955
location: complement(7393..7917)
location: region:7393-7917:-1
so has part: feature:7393-7917:-1:exon

WP_135848095.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7393-7917:-1:exon

EPZ47_RS29960
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS29960
old locus tag: EPZ47_29955
so part of: sequence
location: complement(7929..10106)
location: region:7929-10106:-1
so has part: feature:7929-10106:-1:exon
subclass of: SO_0000010

position:7929:-1
position: 7929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10106:-1
position: 10106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7929-10106:-1:exon

EPZ47_RS29960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS29960
old locus tag: EPZ47_29955
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006401354.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DotA/TraY family protein
translation: MNRGRALGALVLLYCLLQSNTVLASSTTTLGEIAQAAQRSEDKSRQALVSIFGQVVNNPLASGTNNGGDTILASLFQVINSALLVVGMMFACYILFRRLTQIAHDGSVFGRDKTTLWGPIRLVLGVSSLVPTANGWCLSQLLMLWAASVMGVGIANLGTDGAVAAFDNGQSMVIQPAMPSTVTLARALYEANLCLHAINAGNAMTVAAGGLQSPRAYVQQTVTNSGFMLKNAEGKVCGGAEIDITQLEPSAQSTNWFSETIDTSTIYQAHLRALSEMQSRLSKSAQDFVTAVIQGQQDSITLPDAQANIESAALAYENLLNHDAGTKQGDIANLASHLSSSIKEGGWWTLGAWYQTFAQANSKLTSAIAGKAKVFGESFSGDPGINTLRNSVFHAYQTQQANSVNASPLGRMASTAGADTNNIISSIFSGPGQKIVNYMTSIDVGAEARGTINPLIKMKNLGDYTLGAAETAVGIYVTAKVATSVADGINAAGVAAKTANFFTGVTDGIKGLLDAISPIIFMILIPLFVVGAGLSIYLPLVPFIVWFGAIINWIVIVCEAIIAAPLWAMTHLGDDGDGMGQRTGHGYIFLLNVMVRPILMVIGFFAGGAILVVGGTTLNELYGIAVANVQFDSITGLVSVIVFLGIYFMMCLNLIHTCFNLVFIVPDNVISWVGGNTPTTLGREANDQIKSSFNVMANKFEHMMPRGGKSDGGKSQSTEGNGMKG
SIO_010081: EPZ47_RS29960
subclass of: SO_0000673
so part of: EPZ47_RS29960
location: complement(7929..10106)
location: region:7929-10106:-1
so has part: feature:7929-10106:-1:exon

WP_135848096.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7929-10106:-1:exon

EPZ47_RS29965
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS29965
old locus tag: EPZ47_29960
so part of: sequence
location: complement(10103..10660)
location: region:10103-10660:-1
so has part: feature:10103-10660:-1:exon
subclass of: SO_0000010

position:10103:-1
position: 10103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10660:-1
position: 10660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10103-10660:-1:exon

EPZ47_RS29965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS29965
old locus tag: EPZ47_29960
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNAKQTSKKAGQIALRLIWPGAAIKKTIEHTRSSKEQHKKNLEHIRALYQVVRKSSKPESKESSRTDCTFEEAMNNREPGSPSIPALYDLFLFKKRLALAAGTAFITLGIYAMVNATWLGMTTLLASPPVFFMVALSAQLRLWQLRTRRLSQTERGSLQDFISEIRGWWWTVLDPELSRKKGAHP
SIO_010081: EPZ47_RS29965
subclass of: SO_0000673
so part of: EPZ47_RS29965
location: complement(10103..10660)
location: region:10103-10660:-1
so has part: feature:10103-10660:-1:exon

WP_135848097.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10103-10660:-1:exon

EPZ47_RS29970
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS29970
old locus tag: EPZ47_29965
so part of: sequence
location: complement(10650..10937)
location: region:10650-10937:-1
so has part: feature:10650-10937:-1:exon
subclass of: SO_0000010

position:10650:-1
position: 10650
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10937:-1
position: 10937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10650-10937:-1:exon

EPZ47_RS29970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS29970
old locus tag: EPZ47_29965
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRAPTKTANPELIHNKRISQFWLIFSITGLISGWLYSAAIWLAIFITCLLWLVSASGLLWLARNPDAHAFDFYRTPYWWLKLLDFEFKKEPKNEC
SIO_010081: EPZ47_RS29970
subclass of: SO_0000673
so part of: EPZ47_RS29970
location: complement(10650..10937)
location: region:10650-10937:-1
so has part: feature:10650-10937:-1:exon

WP_135848098.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10650-10937:-1:exon

EPZ47_RS29975
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS29975
old locus tag: EPZ47_29970
so part of: sequence
location: complement(11180..11737)
location: region:11180-11737:-1
so has part: feature:11180-11737:-1:exon
subclass of: SO_0000010

position:11180:-1
position: 11180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11737:-1
position: 11737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11180-11737:-1:exon

EPZ47_RS29975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS29975
old locus tag: EPZ47_29970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016567452.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDEVAVFTRQVLSRSSDHKRAMQLLARANIPSQMIAILRQELDSMVRVIYLLSQEPARRTTLIEASVKGQQWKQVNGRGRVTDREMVELAQQLQGWTCSVYKFGCAFIHLSNLHDYNDRDPMQQLTTEDREAILAHCRHYHGGPARSDFPDLLPYLPKVLDKVSGNLEYYLGQLQEGFFLRPAEI
SIO_010081: EPZ47_RS29975
subclass of: SO_0000673
so part of: EPZ47_RS29975
location: complement(11180..11737)
location: region:11180-11737:-1
so has part: feature:11180-11737:-1:exon

WP_135848099.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11180-11737:-1:exon

EPZ47_RS29980
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS29980
old locus tag: EPZ47_29975
so part of: sequence
location: complement(11808..12401)
location: region:11808-12401:-1
so has part: feature:11808-12401:-1:exon
subclass of: SO_0000010

position:11808:-1
position: 11808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12401:-1
position: 12401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11808-12401:-1:exon

EPZ47_RS29980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS29980
old locus tag: EPZ47_29975
inference: COORDINATES: protein motif:HMM:NF024898.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
translation: MTQLQDASQDIVDTFLPTIFENDAKGILADLLAQPGLAMHFMAFSKAETMKAIRHVVGILEECYRAGHLKVAVSHENGRLYGYAIFFVHPDPSISRYCHKIFVFEPYRGHGIGTQLLNGVLDYSQGTCLLCNHNLIQFYERAGLEFKGDFTPPTAQQGFALTRDMYVDLAIMGSPGIEGSSPVFMLNDDDIKQLLVI
SIO_010081: EPZ47_RS29980
subclass of: SO_0000673
so part of: EPZ47_RS29980
location: complement(11808..12401)
location: region:11808-12401:-1
so has part: feature:11808-12401:-1:exon

WP_135848100.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11808-12401:-1:exon

EPZ47_RS30155
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS30155
so part of: sequence
location: complement(12518..12688)
location: region:12518-12688:-1
so has part: feature:12518-12688:-1:exon
subclass of: SO_0000010

position:12518:-1
position: 12518
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12688:-1
position: 12688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12518-12688:-1:exon

EPZ47_RS30155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS30155
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQKFDLRSWCLGIVNGVLIKVLAGIILVYWPVPEAPVSHPCTAPALIEVAAQRVCI
SIO_010081: EPZ47_RS30155
subclass of: SO_0000673
so part of: EPZ47_RS30155
location: complement(12518..12688)
location: region:12518-12688:-1
so has part: feature:12518-12688:-1:exon

WP_158296379.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12518-12688:-1:exon

EPZ47_RS29985
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS29985
old locus tag: EPZ47_29980
so part of: sequence
location: complement(12833..13015)
location: region:12833-13015:-1
so has part: feature:12833-13015:-1:exon
subclass of: SO_0000010

position:12833:-1
position: 12833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13015:-1
position: 13015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12833-13015:-1:exon

EPZ47_RS29985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS29985
old locus tag: EPZ47_29980
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIVVREDGKTYEVHERIREMAYYTPWGRETQIDKIVEYRECIVDQADGLTESERGNSKS
SIO_010081: EPZ47_RS29985
subclass of: SO_0000673
so part of: EPZ47_RS29985
location: complement(12833..13015)
location: region:12833-13015:-1
so has part: feature:12833-13015:-1:exon

WP_135848101.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12833-13015:-1:exon

EPZ47_RS29990
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS29990
old locus tag: EPZ47_29985
so part of: sequence
location: complement(13179..13829)
location: region:13179-13829:-1
so has part: feature:13179-13829:-1:exon
subclass of: SO_0000010

position:13179:-1
position: 13179
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13829:-1
position: 13829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13179-13829:-1:exon

EPZ47_RS29990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS29990
old locus tag: EPZ47_29985
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013646947.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTNILTMIENSKKAKNESIASTVRMPEWMHKFVERLALELDISKHEVMLKLLEHGAEAAQDRLDEVEKAELAQLALAEEVEPQPAVGFHILNTNKTHTDDDHEWMLANKAAAAFYAPWKLNINRIKKGEVVFLYENITGIVAYGRGTGEVQMRDHEGEKDECHYQVLEGFKILEQPISAAAIKKALDRNVVFLRTMSGMPDGQKVLDLIESKKAKP
SIO_010081: EPZ47_RS29990
subclass of: SO_0000673
so part of: EPZ47_RS29990
location: complement(13179..13829)
location: region:13179-13829:-1
so has part: feature:13179-13829:-1:exon

WP_135848102.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13179-13829:-1:exon

EPZ47_RS29995
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS29995
old locus tag: EPZ47_29990
so part of: sequence
location: 13986..14291
location: region:13986-14291:1
so has part: feature:13986-14291:1:exon
subclass of: SO_0000010

position:13986:1
position: 13986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14291:1
position: 14291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13986-14291:1:exon

EPZ47_RS29995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS29995
old locus tag: EPZ47_29990
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MATLTDFDEWLDGAVPSDMVEDVYALYEAVDGETEFAQYKAVRAANGQLLVSYGDGSDWLRLATNDAKEGFLRRIGGRYVGEGGMSVGAWYIMHQGMASDD
SIO_010081: EPZ47_RS29995
subclass of: SO_0000673
so part of: EPZ47_RS29995
location: 13986..14291
location: region:13986-14291:1
so has part: feature:13986-14291:1:exon

WP_135848103.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13986-14291:1:exon

EPZ47_RS30000
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS30000
old locus tag: EPZ47_29995
so part of: sequence
location: 14284..15261
location: region:14284-15261:1
so has part: feature:14284-15261:1:exon
subclass of: SO_0000010

position:14284:1
position: 14284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15261:1
position: 15261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14284-15261:1:exon

EPZ47_RS30000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS30000
old locus tag: EPZ47_29995
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019331482.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MTELTERQTGSLQGTSERRLTAAEFQDLATVPAAVEWFANLANPRTRRAYQGDIEDFCRFVGLHTPEQFRLVTRAHVLAWRSQFEQRGLSGATQRRKLAALTSLFNHLLDSNAVAGGNPVHGVKRPKIESNEGKTPALADHQAKALLEAPDPSTLKGLRDRAIIAVLLYHGLRREEAARLQVDDLQQRRGLQHLRIHGKGGKLRYVPLHPVAAERLHSYLEASGHHHEQDKAPLFRPLRGPKTGAGISAEGIYALVGQYAQAAGIAVVGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKLYDRRHARPEDSPTFKVHY
SIO_010081: EPZ47_RS30000
subclass of: SO_0000673
so part of: EPZ47_RS30000
location: 14284..15261
location: region:14284-15261:1
so has part: feature:14284-15261:1:exon

WP_135848104.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14284-15261:1:exon

EPZ47_RS30005
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS30005
old locus tag: EPZ47_30000
so part of: sequence
location: 15350..16363
location: region:15350-16363:1
so has part: feature:15350-16363:1:exon
subclass of: SO_0000010

position:15350:1
position: 15350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16363:1
position: 16363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15350-16363:1:exon

EPZ47_RS30005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS30005
old locus tag: EPZ47_30000
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKGTKAGQFSPVSLEALELIARDKKNPRLLVAYLGLARHTTMKDLDGRGPNMLTGAGAEKVRVLTGCGTPMATGLVKALVGMGLIKKAAAGLPPAQARWAMQHRGEVNIPHALIDGGIGNADGIGRLLKEGATDEVVVCAIMLLINCYAEHDLEKFGGINHQQMWRNWEHLTSTEGEGFRVTAEPKTESANGKYLSKIISSIGGKVNEKGNSDVFWEAFKLLKSTGLFYEVVTAISIEGKRLPIRVNDFHAVGSDPSLLNDAAGVGVGYYEHKDNDRSEPEGCWFYLPSKPEKVIGIWRLRFRCATPETAKGIHLDWSIVDRAITDLGVKGVLYLE
SIO_010081: EPZ47_RS30005
subclass of: SO_0000673
so part of: EPZ47_RS30005
location: 15350..16363
location: region:15350-16363:1
so has part: feature:15350-16363:1:exon

WP_135848105.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15350-16363:1:exon

EPZ47_RS30010
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS30010
old locus tag: EPZ47_30005
so part of: sequence
location: 16689..17237
location: region:16689-17237:1
so has part: feature:16689-17237:1:exon
subclass of: SO_0000010

position:16689:1
position: 16689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17237:1
position: 17237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16689-17237:1:exon

EPZ47_RS30010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS30010
old locus tag: EPZ47_30005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011167676.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: N-acetyltransferase
translation: MEVFEPIRDFYQRRQASHLNVRASTVQLLTERAAAYRGHFVFPGIDTVAGIEVDGLRVGYVDYGINPLGDRVYINRIDIEDKHQRRGVGLSVMWLLWRMHQVPLVPIHEVWRSKGFWSKARQRLAAAGALIEPELHTGDLEQAQQRWQHLVPELAHERQIREMMASPEWPEIEAGFNARQAL
SIO_010081: EPZ47_RS30010
subclass of: SO_0000673
so part of: EPZ47_RS30010
location: 16689..17237
location: region:16689-17237:1
so has part: feature:16689-17237:1:exon

WP_135848106.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16689-17237:1:exon

EPZ47_RS30020
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS30020
old locus tag: EPZ47_30015
pseudo: true
so part of: sequence
location: <17408..17611
location: region:17408-17611:1
so has part: feature:17408-17611:1:exon
subclass of: SO_0000010

position:17408:1
position: 17408
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:17611:1
position: 17611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17408-17611:1:exon

EPZ47_RS30020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS30020
old locus tag: EPZ47_30015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017279408.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: site-specific integrase
SIO_010081: EPZ47_RS30020
subclass of: SO_0000673
so part of: EPZ47_RS30020
location: <17408..17611
location: region:17408-17611:1
so has part: feature:17408-17611:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17408-17611:1:exon

EPZ47_RS30025
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS30025
old locus tag: EPZ47_30020
so part of: sequence
location: 17661..18044
location: region:17661-18044:1
so has part: feature:17661-18044:1:exon
subclass of: SO_0000010

position:17661:1
position: 17661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18044:1
position: 18044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17661-18044:1:exon

EPZ47_RS30025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS30025
old locus tag: EPZ47_30020
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQTLDELRLRPPVTADEMVRIEGSRSTYRLIEEVINSLAEAELKKDQGFLEKLGRQLGLVRSQPNWEGWNGWGAGRQLKCAALQHAGWTYDESHHPYGEAACAYEKVRQVLLSPECGSAEDLLKRLQ
SIO_010081: EPZ47_RS30025
subclass of: SO_0000673
so part of: EPZ47_RS30025
location: 17661..18044
location: region:17661-18044:1
so has part: feature:17661-18044:1:exon

WP_135848107.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17661-18044:1:exon

EPZ47_RS30030
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS30030
old locus tag: EPZ47_30025
so part of: sequence
location: complement(18342..18857)
location: region:18342-18857:-1
so has part: feature:18342-18857:-1:exon
subclass of: SO_0000010

position:18342:-1
position: 18342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18857:-1
position: 18857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18342-18857:-1:exon

EPZ47_RS30030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS30030
old locus tag: EPZ47_30025
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTNTNDQLGDAALADAFRELMAIVVSMRDAGVSLDQVQHAPVFTYLMTPKQFDRIRKICKQQNWTVPNRRGILIDLQAIAHPLESRETKDNCTPEEALEILAKAYSPYSQIGLNKPKNAQGIIFNTGRKVKVGVGSYYALAVVKVCQEGTEKYLAPVTAYHATEAKIRNIS
SIO_010081: EPZ47_RS30030
subclass of: SO_0000673
so part of: EPZ47_RS30030
location: complement(18342..18857)
location: region:18342-18857:-1
so has part: feature:18342-18857:-1:exon

WP_135848108.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18342-18857:-1:exon

EPZ47_RS30035
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS30035
old locus tag: EPZ47_30030
so part of: sequence
location: complement(18932..19414)
location: region:18932-19414:-1
so has part: feature:18932-19414:-1:exon
subclass of: SO_0000010

position:18932:-1
position: 18932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19414:-1
position: 19414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18932-19414:-1:exon

EPZ47_RS30035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS30035
old locus tag: EPZ47_30030
inference: COORDINATES: protein motif:HMM:NF025107.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MAKAPQSKPSEEADQAIEKKWGKHLTAAGWTAIPNVLFECSQALGLKQLDILIILHLAGYWWKAGNDPYPSKESLATAIGITPRSVQRQIAGLEKKGYIQRVARTSSKGGNLTNRYSFAGLIKAATPLAKEISAEREKKKAESSGRPASKQAGKLELVKS
SIO_010081: EPZ47_RS30035
subclass of: SO_0000673
so part of: EPZ47_RS30035
location: complement(18932..19414)
location: region:18932-19414:-1
so has part: feature:18932-19414:-1:exon

WP_135848109.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18932-19414:-1:exon

EPZ47_RS30040
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS30040
old locus tag: EPZ47_30035
so part of: sequence
location: complement(19945..20214)
location: region:19945-20214:-1
so has part: feature:19945-20214:-1:exon
subclass of: SO_0000010

position:19945:-1
position: 19945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20214:-1
position: 20214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19945-20214:-1:exon

EPZ47_RS30040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS30040
old locus tag: EPZ47_30035
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPRPPRNHLHDAMASLAKAQEQQQKTIDQHSKILQSQGQDIANLEAQVKDMRNNAIRAEVNSGVPTKVVAERYNVSPSRVSQIAPRRPN
SIO_010081: EPZ47_RS30040
subclass of: SO_0000673
so part of: EPZ47_RS30040
location: complement(19945..20214)
location: region:19945-20214:-1
so has part: feature:19945-20214:-1:exon

WP_135848110.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19945-20214:-1:exon

EPZ47_RS30045
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS30045
old locus tag: EPZ47_30040
so part of: sequence
location: 20720..21046
location: region:20720-21046:1
so has part: feature:20720-21046:1:exon
subclass of: SO_0000010

position:20720:1
position: 20720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21046:1
position: 21046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20720-21046:1:exon

EPZ47_RS30045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS30045
old locus tag: EPZ47_30040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004248756.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MQAKHQRNYKPPFSKFVKKAAKPLALAIEDEVEIICETPEIGVQKVGDLAGIWVHKFRFNKQEYLLAYRPPTPEEILQGVGVELLGIDFYQVGPHENFYTDLKKYLKS
SIO_010081: EPZ47_RS30045
subclass of: SO_0000673
so part of: EPZ47_RS30045
location: 20720..21046
location: region:20720-21046:1
so has part: feature:20720-21046:1:exon

WP_135848111.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20720-21046:1:exon

EPZ47_RS30050
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS30050
old locus tag: EPZ47_30045
so part of: sequence
location: 21058..21384
location: region:21058-21384:1
so has part: feature:21058-21384:1:exon
subclass of: SO_0000010

position:21058:1
position: 21058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21384:1
position: 21384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21058-21384:1:exon

EPZ47_RS30050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS30050
old locus tag: EPZ47_30045
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004248755.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MRAAMTAEELFQDLRKMPAAERQKFFVILSAKAFSEEKDSTHEEVFGHLTNDEFTSSEAAEYLEVSTSTFRRYIKKEQLVPSSSVGRNLMFDVPTLKAFKRALKTAKG
SIO_010081: EPZ47_RS30050
subclass of: SO_0000673
so part of: EPZ47_RS30050
location: 21058..21384
location: region:21058-21384:1
so has part: feature:21058-21384:1:exon

WP_135848112.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21058-21384:1:exon

EPZ47_RS30055
type: Gene
subclass of: SO_0000704
RO_0002162: 2505979
locus tag: EPZ47_RS30055
old locus tag: EPZ47_30050
so part of: sequence
location: 21739..21936
location: region:21739-21936:1
so has part: feature:21739-21936:1:exon
subclass of: SO_0000010

position:21739:1
position: 21739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21936:1
position: 21936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21739-21936:1:exon

EPZ47_RS30055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2505979
locus tag: EPZ47_RS30055
old locus tag: EPZ47_30050
inference: COORDINATES: protein motif:HMM:NF013561.2
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix protein, CopG family
translation: MTYSENLKIISFKLPADKKLALEALLRKRGTNTSVFLRQAVIEFLEREDEGKEQLKLPLGEKMRS
SIO_010081: EPZ47_RS30055
subclass of: SO_0000673
so part of: EPZ47_RS30055
location: 21739..21936
location: region:21739-21936:1
so has part: feature:21739-21936:1:exon

WP_115129453.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21739-21936:1:exon