Halorussus pelagicus strain RC-68 plasmid unnamed3, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haladaptataceae; Halorussus.
Halophilic archaea isolated from salted brown alga Laminaria
Submitted (14-JAN-2019) School of Food & Biological Engineering, Jiangsu University, 301 Xuefu Road, Jingkou District, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP035122.1.\nBacteria and source DNA available from School of Food & Biological\nEngineering, Jiangsu University.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: FALCON v. v0.3.0.\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 10:32:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,559\nCDSs (total) :: 3,500\nGenes (coding) :: 3,453\nCDSs (with protein) :: 3,453\nGenes (RNA) :: 59\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 2\nPseudo Genes (total) :: 47\nCDSs (without protein) :: 47\nPseudo Genes (ambiguous residues) :: 0 of 47\nPseudo Genes (frameshifted) :: 20 of 47\nPseudo Genes (incomplete) :: 32 of 47\nPseudo Genes (internal stop) :: 10 of 47\nPseudo Genes (multiple problems) :: 15 of 47\nCRISPR Arrays :: 6\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
septum formation initiator family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007274334.1
GO:0004521 - RNA endonuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014050462.1
GO:0004520 - DNA endonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
type I-D CRISPR-associated endonuclease Cas1d
COORDINATES: similar to AA sequence:RefSeq:WP_006111341.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006600195.1
GO:0004386 - helicase activity [Evidence IEA]
type I-D CRISPR-associated helicase Cas3'
COORDINATES: similar to AA sequence:RefSeq:WP_011323346.1
GO:0003674 - molecular_function [Evidence IEA]
type I-D CRISPR-associated protein Cas5/Csc1
COORDINATES: similar to AA sequence:RefSeq:WP_006600197.1
type I-D CRISPR-associated protein Cas7/Csc2
COORDINATES: protein motif:HMM:TIGR03174.1
type I-D CRISPR-associated protein Cas10d/Csc3
COORDINATES: similar to AA sequence:RefSeq:WP_014555210.1
CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6
COORDINATES: protein motif:HMM:TIGR01884.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030725.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_010890438.1
COORDINATES: similar to AA sequence:RefSeq:WP_007344000.1
COORDINATES: similar to AA sequence:RefSeq:WP_004056551.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006884331.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008847039.1
COORDINATES: similar to AA sequence:RefSeq:WP_006110624.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF024502.2
phage integrase SAM-like domain-containing protein
COORDINATES: protein motif:HMM:TIGR01573.1
COORDINATES: protein motif:HMM:TIGR00287.1
GO:0003824 - catalytic activity [Evidence IEA]
prenyltransferase/squalene oxidase repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006182271.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_011222280.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004518753.1
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008313586.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
class I SAM-dependent DNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_015301969.1
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006078674.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008527284.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type I restriction-modification system subunit M N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005579310.1
COORDINATES: similar to AA sequence:RefSeq:WP_004595402.1
helix-turn-helix transcriptional regulator