Halorussus pelagicus strain RC-68 plasmid unnamed2, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haladaptataceae; Halorussus.
Halophilic archaea isolated from salted brown alga Laminaria
Submitted (14-JAN-2019) School of Food & Biological Engineering, Jiangsu University, 301 Xuefu Road, Jingkou District, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP035121.1.\nBacteria and source DNA available from School of Food & Biological\nEngineering, Jiangsu University.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: FALCON v. v0.3.0.\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 10:32:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,559\nCDSs (total) :: 3,500\nGenes (coding) :: 3,453\nCDSs (with protein) :: 3,453\nGenes (RNA) :: 59\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 2\nPseudo Genes (total) :: 47\nCDSs (without protein) :: 47\nPseudo Genes (ambiguous residues) :: 0 of 47\nPseudo Genes (frameshifted) :: 20 of 47\nPseudo Genes (incomplete) :: 32 of 47\nPseudo Genes (internal stop) :: 10 of 47\nPseudo Genes (multiple problems) :: 15 of 47\nCRISPR Arrays :: 6\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006093032.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009762230.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007143087.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_014053430.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488207.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289715.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488209.1
COORDINATES: similar to AA sequence:RefSeq:WP_004977662.1
COORDINATES: protein motif:HMM:NF024420.2
COORDINATES: similar to AA sequence:RefSeq:WP_008322011.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594150.1
DNA-directed RNA polymerase subunit epsilon
COORDINATES: similar to AA sequence:RefSeq:WP_006114894.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048535.1
COORDINATES: protein motif:HMM:NF024783.2
COORDINATES: similar to AA sequence:RefSeq:WP_013035611.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011225048.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_006090658.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
VapC toxin family PIN domain ribonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_013035684.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013035018.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_008458671.1
COORDINATES: similar to AA sequence:RefSeq:WP_008387649.1
COORDINATES: similar to AA sequence:RefSeq:WP_008443155.1
COORDINATES: similar to AA sequence:RefSeq:WP_010546872.1
COORDINATES: similar to AA sequence:RefSeq:WP_004516375.1
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015911601.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007276461.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446344.1
COORDINATES: similar to AA sequence:RefSeq:WP_008453994.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009762213.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004043375.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184805.1
COORDINATES: similar to AA sequence:RefSeq:WP_011571422.1
COORDINATES: similar to AA sequence:RefSeq:WP_009367704.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488251.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444956.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183453.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184794.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007143117.1
COORDINATES: similar to AA sequence:RefSeq:WP_006092962.1
COORDINATES: similar to AA sequence:RefSeq:WP_006093045.1
COORDINATES: similar to AA sequence:RefSeq:WP_008893150.1
COORDINATES: similar to AA sequence:RefSeq:WP_007258743.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
class I SAM-dependent DNA methyltransferase
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008893147.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0009035 - type I site-specific deoxyribonuclease activity [Evidence IEA]
type I restriction endonuclease subunit R
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF015210.2
COORDINATES: protein motif:HMM:NF037660.2
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007143091.1
COORDINATES: similar to AA sequence:RefSeq:WP_010881144.1
COORDINATES: protein motif:HMM:NF014893.2
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]