Acetobacter oryzoeni strain B6 plasmid unnamed3, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.
Acetobacter oryzioeni sp. nov., isolated from Korean rice wine vinegar
Submitted (08-AUG-2019) Life Science, Chung-Ang University, 84, Heukseok-Ro, Dongjak-Gu, Seoul 06974, South Korea
Submitted (07-JAN-2019) Life Science, Chung-Ang University, 84, Heukseok-Ro, Dongjak-Gu, Seoul 06974, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP042811.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 314.0x\nSequencing Technology :: PacBio RSII; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/24/2023 03:44:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,960\nCDSs (total) :: 2,887\nGenes (coding) :: 2,816\nCDSs (with protein) :: 2,816\nGenes (RNA) :: 73\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 4\nPseudo Genes (total) :: 71\nCDSs (without protein) :: 71\nPseudo Genes (ambiguous residues) :: 0 of 71\nPseudo Genes (frameshifted) :: 26 of 71\nPseudo Genes (incomplete) :: 55 of 71\nPseudo Genes (internal stop) :: 8 of 71\nPseudo Genes (multiple problems) :: 17 of 71\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_010512305.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010512303.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006560192.1
COORDINATES: protein motif:HMM:NF015354.2
COORDINATES: similar to AA sequence:RefSeq:WP_011746418.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976042.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_012643596.1
COORDINATES: similar to AA sequence:RefSeq:WP_015075055.1
COORDINATES: protein motif:HMM:NF016876.2
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010518137.1
COORDINATES: similar to AA sequence:RefSeq:WP_019087465.1
COORDINATES: protein motif:HMM:NF014814.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019092368.1
COORDINATES: similar to AA sequence:RefSeq:WP_014105788.1
GO:0016746 - acyltransferase activity [Evidence IEA]
GO:0046677 - response to antibiotic [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007396251.1
COORDINATES: similar to AA sequence:RefSeq:WP_018308596.1
COORDINATES: similar to AA sequence:RefSeq:WP_019088721.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_019087318.1
COORDINATES: similar to AA sequence:RefSeq:WP_019087205.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_003630665.1
COORDINATES: similar to AA sequence:RefSeq:WP_012812475.1
COORDINATES: similar to AA sequence:RefSeq:WP_019091042.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012813374.1
COORDINATES: similar to AA sequence:RefSeq:WP_003630651.1
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003630649.1
COORDINATES: similar to AA sequence:RefSeq:WP_006559417.1
COORDINATES: similar to AA sequence:RefSeq:WP_006559416.1
COORDINATES: similar to AA sequence:RefSeq:WP_006559415.1
COORDINATES: similar to AA sequence:RefSeq:WP_010511350.1
COORDINATES: similar to AA sequence:RefSeq:WP_003631008.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013832885.1