Acetobacter oryzoeni strain B6 plasmid unnamed2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.
Acetobacter oryzioeni sp. nov., isolated from Korean rice wine vinegar
Submitted (08-AUG-2019) Life Science, Chung-Ang University, 84, Heukseok-Ro, Dongjak-Gu, Seoul 06974, South Korea
Submitted (07-JAN-2019) Life Science, Chung-Ang University, 84, Heukseok-Ro, Dongjak-Gu, Seoul 06974, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP042810.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 314.0x\nSequencing Technology :: PacBio RSII; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/24/2023 03:44:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,960\nCDSs (total) :: 2,887\nGenes (coding) :: 2,816\nCDSs (with protein) :: 2,816\nGenes (RNA) :: 73\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 4\nPseudo Genes (total) :: 71\nCDSs (without protein) :: 71\nPseudo Genes (ambiguous residues) :: 0 of 71\nPseudo Genes (frameshifted) :: 26 of 71\nPseudo Genes (incomplete) :: 55 of 71\nPseudo Genes (internal stop) :: 8 of 71\nPseudo Genes (multiple problems) :: 17 of 71\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014842909.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_020301039.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_019088525.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611877.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003625705.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019087991.1
COORDINATES: similar to AA sequence:RefSeq:WP_019087992.1
COORDINATES: similar to AA sequence:RefSeq:WP_014456911.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014456910.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003627137.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010515666.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020292539.1
COORDINATES: similar to AA sequence:RefSeq:WP_019086846.1
COORDINATES: similar to AA sequence:RefSeq:WP_019088632.1
COORDINATES: similar to AA sequence:RefSeq:WP_010516316.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_010510838.1
COORDINATES: similar to AA sequence:RefSeq:WP_006560347.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010518361.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007284507.1
COORDINATES: similar to AA sequence:RefSeq:WP_003631183.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012813021.1
COORDINATES: similar to AA sequence:RefSeq:WP_006560294.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813226.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014466413.1
COORDINATES: similar to AA sequence:RefSeq:WP_014106934.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003630856.1
MSMEG_0572 family nitrogen starvation response protein
COORDINATES: similar to AA sequence:RefSeq:WP_007398732.1
GO:0000257 - nitrilase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003630852.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]; GO:0046500 - S-adenosylmethionine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012813220.1
GO:0016746 - acyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003630850.1
GO:0003824 - catalytic activity [Evidence IEA]
sll0787 family AIR synthase-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_010515872.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010512402.1
MSMEG_0570 family nitrogen starvation response protein
COORDINATES: similar to AA sequence:RefSeq:WP_007396495.1
MSMEG_0569 family flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_019088969.1
COORDINATES: similar to AA sequence:RefSeq:WP_010515883.1
COORDINATES: similar to AA sequence:RefSeq:WP_019088967.1
COORDINATES: similar to AA sequence:RefSeq:WP_003630705.1
COORDINATES: similar to AA sequence:RefSeq:WP_010515886.1
COORDINATES: similar to AA sequence:RefSeq:WP_003626329.1
COORDINATES: similar to AA sequence:RefSeq:WP_010515888.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_076611976.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012813160.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0097351 - toxin sequestering activity [Evidence IEA]
GO:0001558 - regulation of cell growth [Evidence IEA]
type II toxin-antitoxin system PrlF family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_012813161.1
type II toxin-antitoxin system YhaV family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012813162.1
COORDINATES: protein motif:HMM:NF013395.2
COORDINATES: similar to AA sequence:RefSeq:WP_003616547.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012307.2
COORDINATES: similar to AA sequence:RefSeq:WP_014104060.1
COORDINATES: similar to AA sequence:RefSeq:WP_019089142.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0009035 - type I site-specific deoxyribonuclease activity [Evidence IEA]
type I restriction endonuclease subunit R
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005652535.1
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003630866.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
HI0074 family nucleotidyltransferase substrate-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_003630867.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
class I SAM-dependent DNA methyltransferase
COORDINATES: protein motif:HMM:NF018259.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006117295.1
COORDINATES: protein motif:HMM:NF020859.2
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010512303.1
COORDINATES: similar to AA sequence:RefSeq:WP_010512305.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF012870.2
GO:0015074 - DNA integration [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_019089619.1
COORDINATES: similar to AA sequence:RefSeq:WP_010516402.1
GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007089900.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006558963.1
COORDINATES: similar to AA sequence:RefSeq:WP_019092431.1
COORDINATES: similar to AA sequence:RefSeq:WP_010666742.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010666741.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813102.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813101.1
COORDINATES: similar to AA sequence:RefSeq:WP_019092358.1
COORDINATES: similar to AA sequence:RefSeq:WP_015241382.1
COORDINATES: similar to AA sequence:RefSeq:WP_041359162.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006115878.1
COORDINATES: similar to AA sequence:RefSeq:WP_006115877.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012813143.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: protein motif:HMM:NF014640.2
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014648.2
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006117338.1
COORDINATES: similar to AA sequence:RefSeq:WP_012812332.1
autotransporter strand-loop-strand O-heptosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012812331.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813179.1
COORDINATES: similar to AA sequence:RefSeq:WP_003625690.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006115744.1
COORDINATES: similar to AA sequence:RefSeq:WP_019092593.1
COORDINATES: similar to AA sequence:RefSeq:WP_019088964.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813353.1
COORDINATES: similar to AA sequence:RefSeq:WP_019089467.1
COORDINATES: similar to AA sequence:RefSeq:WP_003630499.1
COORDINATES: similar to AA sequence:RefSeq:WP_003626735.1
COORDINATES: similar to AA sequence:RefSeq:WP_019089358.1
COORDINATES: similar to AA sequence:RefSeq:WP_006560472.1
COORDINATES: similar to AA sequence:RefSeq:WP_019089348.1
COORDINATES: similar to AA sequence:RefSeq:WP_006115562.1
COORDINATES: similar to AA sequence:RefSeq:WP_006115563.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: protein motif:HMM:NF017243.2
COORDINATES: similar to AA sequence:RefSeq:WP_010513026.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019088707.1
COORDINATES: similar to AA sequence:RefSeq:WP_003626805.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813145.1
COORDINATES: similar to AA sequence:RefSeq:WP_019088710.1
winged helix-turn-helix domain-containing protein