Pseudorhodobacter turbinis strain S12M18 plasmid unnamed3, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Pseudorhodobacter.
Pseudorhodobacter turbinis sp. nov., isolated from the gut of the Korean turban shell
Submitted (02-MAY-2019) Department of Biology, Kyung Hee University, 1 Hoegi-dong, Dongdaemun-gu, Seoul 02447, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP039967.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS HGAP v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 266.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/28/2023 02:45:19\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,151\nCDSs (total) :: 4,085\nGenes (coding) :: 3,852\nCDSs (with protein) :: 3,852\nGenes (RNA) :: 66\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 3\nPseudo Genes (total) :: 233\nCDSs (without protein) :: 233\nPseudo Genes (ambiguous residues) :: 0 of 233\nPseudo Genes (frameshifted) :: 115 of 233\nPseudo Genes (incomplete) :: 186 of 233\nPseudo Genes (internal stop) :: 58 of 233\nPseudo Genes (multiple problems) :: 105 of 233\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Pseudorhodobacter turbinis
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020043761.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010138049.1
COORDINATES: similar to AA sequence:RefSeq:WP_002721020.1
GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_008840026.1
COORDINATES: similar to AA sequence:RefSeq:WP_006938928.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011537208.1
COORDINATES: similar to AA sequence:RefSeq:WP_009814287.1
COORDINATES: similar to AA sequence:RefSeq:WP_005614852.1
COORDINATES: similar to AA sequence:RefSeq:WP_009814289.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009814290.1
COORDINATES: similar to AA sequence:RefSeq:WP_007804106.1
COORDINATES: similar to AA sequence:RefSeq:WP_009502575.1
COORDINATES: similar to AA sequence:RefSeq:WP_008209629.1
GO:0016051 - carbohydrate biosynthetic process [Evidence IEA]
N-acetylneuraminate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007811982.1
COORDINATES: similar to AA sequence:RefSeq:WP_007811950.1
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: similar to AA sequence:RefSeq:WP_007811984.1
COORDINATES: similar to AA sequence:RefSeq:WP_008886384.1
COORDINATES: similar to AA sequence:RefSeq:WP_008886420.1
COORDINATES: similar to AA sequence:RefSeq:WP_007811956.1
COORDINATES: similar to AA sequence:RefSeq:WP_007811958.1
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: similar to AA sequence:RefSeq:WP_011746890.1
GO:0008966 - phosphoglucosamine mutase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009160276.1
UDP-glucose/GDP-mannose dehydrogenase family protein