Streptomonospora litoralis strain M2 plasmid phiM2, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Streptosporangiales; Nocardiopsaceae; Streptomonospora.
Submitted (25-FEB-2019) CeBiTec, Bielefeld University, Sequenz 1, Bielefeld 33615, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP036456.1.\nAnnotated using prokka v1.11 from http://www.vicbioinformatics.com.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.8; canu v. 1.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 186.3x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/12/2023 03:04:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,072\nCDSs (total) :: 4,998\nGenes (coding) :: 4,931\nCDSs (with protein) :: 4,931\nGenes (RNA) :: 74\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 3\nPseudo Genes (total) :: 68\nCDSs (without protein) :: 67\nPseudo Genes (ambiguous residues) :: 0 of 68\nPseudo Genes (frameshifted) :: 13 of 68\nPseudo Genes (incomplete) :: 54 of 68\nPseudo Genes (internal stop) :: 3 of 68\nPseudo Genes (multiple problems) :: 3 of 68\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Streptomonospora litoralis
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF016214.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF039693.1
COORDINATES: similar to AA sequence:RefSeq:WP_019631297.1
COORDINATES: protein motif:HMM:NF013625.2
GO:0042834 - peptidoglycan binding [Evidence IEA]
peptidoglycan-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012702.2
COORDINATES: similar to AA sequence:RefSeq:WP_017567813.1
GO:0004418 - hydroxymethylbilane synthase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017558458.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017623054.1
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017557681.1
UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
COORDINATES: protein motif:HMM:NF016908.2
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017927414.1
COORDINATES: protein motif:HMM:NF016377.2
COORDINATES: protein motif:HMM:NF024967.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF020976.2
COORDINATES: protein motif:HMM:TIGR01760.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016032 - viral process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015034074.1
COORDINATES: similar to AA sequence:RefSeq:WP_018503095.1
COORDINATES: protein motif:HMM:TIGR01725.1
COORDINATES: protein motif:HMM:NF023081.2
P22 phage major capsid protein family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006545787.1
COORDINATES: protein motif:HMM:NF016988.2
COORDINATES: similar to AA sequence:RefSeq:WP_019061712.1
COORDINATES: similar to AA sequence:RefSeq:WP_019061714.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018827865.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_019548602.1
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF019997.2
COORDINATES: similar to AA sequence:RefSeq:WP_018832041.1
COORDINATES: protein motif:HMM:NF040299.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
SANT/Myb-like DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF016148.2
COORDINATES: similar to AA sequence:RefSeq:WP_015993769.1
COORDINATES: protein motif:HMM:NF023395.2
COORDINATES: protein motif:HMM:NF019146.2
COORDINATES: similar to AA sequence:RefSeq:WP_018815555.1
COORDINATES: protein motif:HMM:NF013964.2
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020116780.1
COORDINATES: similar to AA sequence:RefSeq:WP_020662951.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF014520.2
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014627388.1
RusA family crossover junction endodeoxyribonuclease
COORDINATES: protein motif:HMM:NF040036.1
DUF6248 family natural product biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_006246293.1
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: protein motif:HMM:NF013122.2
GO:0004527 - exonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016302.2
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: protein motif:HMM:NF012576.2
LacI family DNA-binding transcriptional regulator