Hymenobacter radiodurans strain 17J36-26 plasmid unnamed1, complete sequence.
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter.
Submitted (21-JAN-2019) Department of Bio & Environmental Technology, Seoul Women's University, 623 Hwarangno, Nowon-gu, Seoul 139-774, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP037921.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 197.47x\nSequencing Technology :: PacBio RS II\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/06/2022 03:25:50\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,445\nCDSs (total) :: 4,391\nGenes (coding) :: 4,146\nCDSs (with protein) :: 4,146\nGenes (RNA) :: 54\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 42\nncRNAs :: 3\nPseudo Genes (total) :: 245\nCDSs (without protein) :: 245\nPseudo Genes (ambiguous residues) :: 0 of 245\nPseudo Genes (frameshifted) :: 215 of 245\nPseudo Genes (incomplete) :: 34 of 245\nPseudo Genes (internal stop) :: 7 of 245\nPseudo Genes (multiple problems) :: 11 of 245\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_019949126.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: similar to AA sequence:RefSeq:WP_002987020.1
COORDINATES: protein motif:HMM:NF018269.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012575.2
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014217087.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019949149.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014033782.1
COORDINATES: similar to AA sequence:RefSeq:WP_016193921.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019949151.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019949152.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_012928065.1
COORDINATES: protein motif:HMM:NF015658.2
COORDINATES: similar to AA sequence:RefSeq:WP_002640888.1
COORDINATES: protein motif:HMM:NF015553.2
COORDINATES: similar to AA sequence:RefSeq:WP_012213850.1
GDCCVxC domain-containing (seleno)protein
COORDINATES: similar to AA sequence:RefSeq:WP_002978464.1
COORDINATES: similar to AA sequence:RefSeq:WP_017734009.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: protein motif:HMM:NF024554.2
COORDINATES: protein motif:HMM:NF024745.2
COORDINATES: similar to AA sequence:RefSeq:WP_015267003.1
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF017524.2
plasmid mobilization relaxosome protein MobC
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF023316.2
COORDINATES: similar to AA sequence:RefSeq:WP_013760808.1
COORDINATES: protein motif:HMM:NF024960.2
COORDINATES: similar to AA sequence:RefSeq:WP_006801238.1
GO:0032991 - protein-containing complex [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0032196 - transposition [Evidence IEA]
TraG family conjugative transposon ATPase
COORDINATES: protein motif:HMM:TIGR03782.1
COORDINATES: similar to AA sequence:RefSeq:WP_018615881.1
COORDINATES: protein motif:HMM:TIGR03779.1
COORDINATES: protein motif:HMM:TIGR03780.1
COORDINATES: protein motif:HMM:NF025001.2
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: protein motif:HMM:NF036995.2
DUF1016 N-terminal domain-containing protein
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011710103.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013884.2
COORDINATES: similar to AA sequence:RefSeq:WP_006219909.1
COORDINATES: similar to AA sequence:RefSeq:WP_009194419.1
COORDINATES: similar to AA sequence:RefSeq:WP_008594564.1
COORDINATES: protein motif:HMM:NF013777.2
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002632669.1
GO:0035550 - urease complex [Evidence IEA]
GO:0043419 - urea catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015818623.1
GO:0016151 - nickel cation binding [Evidence IEA]; GO:0009039 - urease activity [Evidence IEA]
GO:0019627 - urea metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013858.2
COORDINATES: similar to AA sequence:RefSeq:WP_011584650.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016530 - metallochaperone activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013899.2
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_010600426.1
COORDINATES: similar to AA sequence:RefSeq:WP_018620682.1
GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]
GO:0006629 - lipid metabolic process [Evidence IEA]
glycerophosphodiester phosphodiesterase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012792874.1
calcineurin-like phosphoesterase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018472308.1
SusD/RagB family nutrient-binding outer membrane lipoprotein
COORDINATES: similar to AA sequence:RefSeq:WP_006799853.1
GO:0045203 - integral component of cell outer membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0071702 - organic substance transport [Evidence IEA]
SusC/RagA family TonB-linked outer membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_013931332.1
COORDINATES: similar to AA sequence:RefSeq:WP_003197627.1
COORDINATES: similar to AA sequence:RefSeq:WP_013765459.1
COORDINATES: protein motif:HMM:NF040143.1
COORDINATES: similar to AA sequence:RefSeq:WP_020143538.1
COORDINATES: protein motif:HMM:NF039502.1
COORDINATES: similar to AA sequence:RefSeq:WP_013665387.1
COORDINATES: similar to AA sequence:RefSeq:WP_019987304.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009282448.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: protein motif:HMM:NF024957.2
COORDINATES: similar to AA sequence:RefSeq:WP_020537707.1
COORDINATES: protein motif:HMM:NF012376.2
COORDINATES: similar to AA sequence:RefSeq:WP_011583810.1
COORDINATES: protein motif:HMM:NF021606.2
COORDINATES: similar to AA sequence:RefSeq:WP_019949229.1
COORDINATES: similar to AA sequence:RefSeq:WP_009642533.1
COORDINATES: protein motif:HMM:NF025574.2
COORDINATES: protein motif:HMM:NF017007.2
COORDINATES: protein motif:HMM:NF022019.2
COORDINATES: protein motif:HMM:NF019313.2
COORDINATES: similar to AA sequence:RefSeq:WP_017733616.1
COORDINATES: similar to AA sequence:RefSeq:WP_019949767.1
COORDINATES: similar to AA sequence:RefSeq:WP_011584341.1
COORDINATES: similar to AA sequence:RefSeq:WP_015894694.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014385.2
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019946708.1
lipid-A-disaccharide synthase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_019948932.1
COORDINATES: similar to AA sequence:RefSeq:WP_015049436.1
COORDINATES: protein motif:HMM:NF024629.2
COORDINATES: protein motif:HMM:NF039394.1
DUF6268 family outer membrane beta-barrel protein
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: protein motif:HMM:NF033542.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF039999.1
COORDINATES: similar to AA sequence:RefSeq:WP_019600510.1
COORDINATES: similar to AA sequence:RefSeq:WP_006988201.1
COORDINATES: protein motif:HMM:NF012612.2
GO:0005507 - copper ion binding [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013073416.1
COORDINATES: similar to AA sequence:RefSeq:WP_011709211.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019946789.1
heavy-metal-associated domain-containing protein
COORDINATES: protein motif:HMM:NF017672.2
COORDINATES: protein motif:HMM:NF027890.2
COORDINATES: protein motif:HMM:NF013069.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016988086.1
COORDINATES: similar to AA sequence:RefSeq:WP_012931321.1
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: similar to AA sequence:RefSeq:WP_012931320.1
COORDINATES: similar to AA sequence:RefSeq:WP_009318991.1
COORDINATES: similar to AA sequence:RefSeq:WP_019949140.1
four-helix bundle copper-binding protein
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: similar to AA sequence:RefSeq:WP_019949138.1
COORDINATES: similar to AA sequence:RefSeq:WP_011542707.1
COORDINATES: protein motif:HMM:NF039593.1
heavy metal-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012927369.1
COORDINATES: similar to AA sequence:RefSeq:WP_009545518.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024864.2