Enterobacter chengduensis strain WCHECl-C4 = WCHECh050004 plasmid pLAP2_050004, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
Characterization of a strain representing a new Enterobacter species, Enterobacter chengduensis sp. nov
Submitted (22-AUG-2019) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP043319.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.7\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/14/2023 07:12:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,003\nCDSs (total) :: 4,888\nGenes (coding) :: 4,769\nCDSs (with protein) :: 4,769\nGenes (RNA) :: 115\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 82\nncRNAs :: 8\nPseudo Genes (total) :: 119\nCDSs (without protein) :: 119\nPseudo Genes (ambiguous residues) :: 0 of 119\nPseudo Genes (frameshifted) :: 64 of 119\nPseudo Genes (incomplete) :: 73 of 119\nPseudo Genes (internal stop) :: 23 of 119\nPseudo Genes (multiple problems) :: 38 of 119\nPseudo Genes (short protein) :: 1 of 119\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Enterobacter chengduensis
COORDINATES: similar to AA sequence:RefSeq:NP_490498.3
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005305085.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016156579.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016927888.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014907475.1
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014063832.1
COORDINATES: similar to AA sequence:RefSeq:WP_008460143.1
COORDINATES: similar to AA sequence:RefSeq:WP_009088299.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017456310.1
COORDINATES: similar to AA sequence:RefSeq:WP_008815551.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF007943.0
D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH
COORDINATES: similar to AA sequence:RefSeq:WP_004155668.1
GO:0008658 - penicillin binding [Evidence IEA]
penicillin-binding transpeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012477595.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612175.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001516695.1
quinolone resistance pentapeptide repeat protein QnrS1
COORDINATES: similar to AA sequence:RefSeq:WP_017412822.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001493761.1
ISKra4-like element ISKpn19 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_001493762.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001493763.1
COORDINATES: similar to AA sequence:RefSeq:WP_001528604.1
COORDINATES: similar to AA sequence:RefSeq:WP_017694274.1
COORDINATES: similar to AA sequence:RefSeq:WP_017694273.1
COORDINATES: similar to AA sequence:RefSeq:WP_012542028.1
COORDINATES: similar to AA sequence:RefSeq:WP_008322250.1
COORDINATES: similar to AA sequence:RefSeq:WP_007798879.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020805646.1
COORDINATES: similar to AA sequence:RefSeq:WP_000375816.1
COORDINATES: similar to AA sequence:RefSeq:WP_000467135.1
COORDINATES: similar to AA sequence:RefSeq:WP_019843178.1
COORDINATES: similar to AA sequence:RefSeq:WP_004197773.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495523.1
COORDINATES: similar to AA sequence:RefSeq:WP_017694190.1
COORDINATES: similar to AA sequence:RefSeq:WP_004152340.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016495516.1
COORDINATES: similar to AA sequence:RefSeq:WP_005321392.1
COORDINATES: similar to AA sequence:RefSeq:WP_001505082.1
COORDINATES: similar to AA sequence:RefSeq:WP_001555635.1
plasmid partitioning/stability family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000457545.1
COORDINATES: similar to AA sequence:RefSeq:WP_020804879.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:NP_490546.1
COORDINATES: similar to AA sequence:RefSeq:WP_002211749.1
COORDINATES: similar to AA sequence:RefSeq:WP_001104903.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087145.1
COORDINATES: similar to AA sequence:RefSeq:WP_007871821.1
COORDINATES: similar to AA sequence:RefSeq:WP_000761848.1
COORDINATES: similar to AA sequence:RefSeq:WP_001514173.1
COORDINATES: similar to AA sequence:RefSeq:WP_014837276.1
COORDINATES: similar to AA sequence:RefSeq:WP_002211744.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_001244366.1
COORDINATES: similar to AA sequence:RefSeq:WP_000613062.1
COORDINATES: similar to AA sequence:RefSeq:WP_016589766.1
COORDINATES: protein motif:HMM:NF036604.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:NP_052660.1
type I toxin-antitoxin system Hok family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_013087154.1
COORDINATES: similar to AA sequence:RefSeq:WP_019843209.1
COORDINATES: similar to AA sequence:RefSeq:WP_017694209.1
COORDINATES: similar to AA sequence:RefSeq:WP_000080850.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004720863.1
COORDINATES: protein motif:HMM:NF039307.1
COORDINATES: similar to AA sequence:RefSeq:WP_019842527.1
COORDINATES: similar to AA sequence:RefSeq:WP_001281049.1
COORDINATES: similar to AA sequence:RefSeq:WP_001611791.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000077650.1
F-type conjugative transfer protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_001563229.1
COORDINATES: protein motif:HMM:NF033891.1
plasmid IncI1-type surface exclusion protein ExcA
COORDINATES: similar to AA sequence:RefSeq:WP_000691807.1
COORDINATES: protein motif:HMM:NF033887.1
COORDINATES: similar to AA sequence:RefSeq:WP_001542514.1
COORDINATES: similar to AA sequence:RefSeq:WP_001024755.1
COORDINATES: similar to AA sequence:RefSeq:WP_001542519.1
COORDINATES: similar to AA sequence:RefSeq:WP_001379391.1
COORDINATES: protein motif:HMM:NF033885.1
COORDINATES: similar to AA sequence:RefSeq:WP_001272004.1
COORDINATES: similar to AA sequence:RefSeq:WP_001611718.1
DotH/IcmK family type IV secretion protein
COORDINATES: similar to AA sequence:RefSeq:WP_001838509.1
DotI/IcmL family type IV secretion protein
COORDINATES: similar to AA sequence:RefSeq:WP_001629514.1
COORDINATES: similar to AA sequence:RefSeq:WP_000842452.1
COORDINATES: similar to AA sequence:RefSeq:WP_001542523.1
COORDINATES: similar to AA sequence:RefSeq:WP_001480051.1
COORDINATES: similar to AA sequence:RefSeq:WP_000866091.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_001755100.1
Members of this family include DotD of type IVB secretion systems and TraH of plasmid conjugative plasmid systems, both lipoproteins; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014358131.1
COORDINATES: similar to AA sequence:RefSeq:WP_001396170.1
COORDINATES: similar to AA sequence:RefSeq:WP_024132209.1
shufflon system plasmid conjugative transfer pilus tip adhesin PilV
COORDINATES: protein motif:HMM:NF013632.2
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000954133.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000470555.1
COORDINATES: similar to AA sequence:RefSeq:WP_001699973.1
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000362204.1
COORDINATES: similar to AA sequence:RefSeq:WP_001838503.1
GO:0009297 - pilus assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF018562.2
COORDINATES: similar to AA sequence:RefSeq:WP_001744074.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0009297 - pilus assembly [Evidence IEA]; GO:0009306 - protein secretion [Evidence IEA]
PilN family type IVB pilus formation outer membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_001744073.1
COORDINATES: similar to AA sequence:RefSeq:WP_001545759.1
toxin co-regulated pilus biosynthesis Q family protein
COORDINATES: similar to AA sequence:RefSeq:WP_001303319.1
transcription termination/antitermination NusG family protein
COORDINATES: protein motif:HMM:NF019886.2
LuxR C-terminal-related transcriptional regulator