Chlamydia buteonis strain IDL17-4553 plasmid pCbutRTH, complete sequence.
type: Entry
definition: Chlamydia buteonis strain IDL17-4553 plasmid pCbutRTH, complete sequence.
sequence version: NZ_CP050317.1
sequence date: 2023-03-25
sequence: sequence
division: CON
label: NZ_CP050317.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN14418883
keyword: RefSeq
source: Chlamydia buteonis
organism: Chlamydia buteonis
taxonomy: Bacteria; Chlamydiota; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP050317.1.\nBacteria and source DNA available from Infectious Diseases\nLaboratory, University of Georgia, Athens, Georgia 30606.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2017\nAssembly Method :: Velvet v. 1.2.10; HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 500.0x\nSequencing Technology :: Illumina MiSeq; PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 04:45:31\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,031\nCDSs (total) :: 987\nGenes (coding) :: 976\nCDSs (with protein) :: 976\nGenes (RNA) :: 44\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 38\nncRNAs :: 3\nPseudo Genes (total) :: 11\nCDSs (without protein) :: 11\nPseudo Genes (ambiguous residues) :: 0 of 11\nPseudo Genes (frameshifted) :: 7 of 11\nPseudo Genes (incomplete) :: 3 of 11\nPseudo Genes (internal stop) :: 5 of 11\nPseudo Genes (multiple problems) :: 3 of 11\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 7555
topology: circular
so has quality: SO_0000988
location: 1..7555
location: region:1-7555:1
RO_0002162: 2494525

NZ_CP050317
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN14418883
type: BioSample
SIO_000068: biosample

1
title: Chlamydial infections in birds of prey presented to California wildlife rehabilitation facilities
author: Seibert, B.A.
author: Ritchie, B.W.
author: Keel, M.K.
author: Kelly, T.R.
author: Ciembor, P.X.
author: Pesti, D.R.
author: Gregory, C.R.
author: Hawkins, M.G.
journal: Unpublished

2
title: Direct Submission
author: Seibert, B.A.
author: Nilsen, R.A.
author: Ritchie, B.W.
author: Wolff, B.J.
author: Hawkins, M.G.
journal: Submitted (20-MAR-2020) Small Animal Medicine Surgery, University of Georgia, 110 Riverbend Rd, Athens, GA 30606, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7555:1
position: 7555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-7555:1:source
so part of: sequence
organism: Chlamydia buteonis
mol type: genomic DNA
strain: IDL17-4553
isolation source: ENVO:01000155
host: Buteo jamaicensis
plasmid: pCbutRTH
country: USA:California
lat lon: 38 N 121 W
collection date: 2017-03

2494525
type: Taxonomy
SIO_000068: taxonomy

HBN95_RS00005
type: Gene
subclass of: SO_0000704
RO_0002162: 2494525
locus tag: HBN95_RS00005
so part of: sequence
location: complement(join(7533..7555,1..1276))
location: region:1-7555:-1
so has part: feature:1-1276:-1:exon
so has part: feature:7533-7555:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7555:-1
position: 7555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1276:-1:exon

position:1276:-1
position: 1276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7533-7555:-1:exon

position:7533:-1
position: 7533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HBN95_RS00005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494525
locus tag: HBN95_RS00005
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: replicative DNA helicase
translation: MIKQSEEEKDLLDVEFFVLGQAVNYLEHAHVIVRRLSEHHFKSENHKNIFLLIRDILRDRDTISISLIWEEIKRRNLDKCMDVSYLIHMSQNADIPIDLDHHIDFLHEKHVNNLLKEFLDSSFQDFTRYPNRRSPYTLVDQFKERLDDIYEKTSYPRRKHVGKTVYDIFSSGENGKASVISQIRHRYDYRSRHKIDYVDGLPTGYASIDENSIILSKGNFVVIAARPAMGKTAFAIDIALHLVLEQGKAVGFISLEMSPNQIVERIISNLSETSCEQLKRGNFSKDVLSKIESIGTKLKGTHFFICDNKSTDLNTLIDQARELRENQGIDALFIDYLQLIGSSKKAENRQNEIADISRQLRKLAVDLQIPIVCLSQLSRKVEDRGDKRPMLSDLRDSGQIEQDADVILFLHRKDYYSQEATKGLSGNYSREK
SIO_010081: HBN95_RS00005
subclass of: SO_0000673
so part of: HBN95_RS00005
location: complement(join(7533..7555,1..1276))
location: region:1-7555:-1
so has part: feature:1-1276:-1:exon
so has part: feature:7533-7555:-1:exon

WP_244983110.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1276:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7533-7555:-1:exon

HBN95_RS00010
type: Gene
subclass of: SO_0000704
RO_0002162: 2494525
locus tag: HBN95_RS00010
old locus tag: HBN95_00005
so part of: sequence
location: 1419..2387
location: region:1419-2387:1
so has part: feature:1419-2387:1:exon
subclass of: SO_0000010

position:1419:1
position: 1419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2387:1
position: 2387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1419-2387:1:exon

HBN95_RS00010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494525
locus tag: HBN95_RS00010
old locus tag: HBN95_00005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006343679.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MFRNEDYSNNLTHQEFLSVRNQHLWEKLREIPLSEAVYTWLSSLTNHTSRSYRGSILALERIGLISLKMPLQQFALLNHNIILDAIKQIPTTIVCWSEGTKQVRAACYISLTKFLNRVTSGIIAVAQPSHQESNKTFYKIRDLVKTNAMNQVERVLFLEELAKINYRDWLIAQTILQGAKRVTEALSITTDHIFFENGVISFNQIKSRGVFKTTIITYPQRFMKLLQDYVGERKGLVFITKKGKGVGLKQLAGTFAKAGIKAHIQFKVTPHVLRATAVTEYKKMGCSDSDIMKITGHSSSKMIYAYDKSTIADNASKKVSLI
SIO_010081: HBN95_RS00010
subclass of: SO_0000673
so part of: HBN95_RS00010
location: 1419..2387
location: region:1419-2387:1
so has part: feature:1419-2387:1:exon

WP_244983111.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1419-2387:1:exon

HBN95_RS00015
type: Gene
subclass of: SO_0000704
RO_0002162: 2494525
locus tag: HBN95_RS00015
old locus tag: HBN95_00010
so part of: sequence
location: complement(2472..3395)
location: region:2472-3395:-1
so has part: feature:2472-3395:-1:exon
subclass of: SO_0000010

position:2472:-1
position: 2472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3395:-1
position: 3395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2472-3395:-1:exon

HBN95_RS00015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494525
locus tag: HBN95_RS00015
old locus tag: HBN95_00010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011109752.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MSGLSHHHKSRLFLTVLEAANVWLATLSPITRKNYASGIKFLVANHILDGSMKLEGLVCCDHCDILNRIKSLTFTYSGKPVSEASKQARAACYISFTKFLYRLTKGVIKHASPSKDFGNPTFYKIRDKVKTEFISKREWLLFFDALKKISFRDYLIGKLIIQGVRKLTEVISLRTEDISFAKNQVTFKVKKRQNRYQEVNVSYPNFLMQELRDYLGNREGWVFVSGEGQQVAINQVYYYFKLAEGDINSPIKVTPHVLRASALAYLKKMGFADQDIMRVSCLSSTQMLSAYDTGMTDNLTSQLPLIF
SIO_010081: HBN95_RS00015
subclass of: SO_0000673
so part of: HBN95_RS00015
location: complement(2472..3395)
location: region:2472-3395:-1
so has part: feature:2472-3395:-1:exon

WP_217301797.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2472-3395:-1:exon

HBN95_RS00020
type: Gene
subclass of: SO_0000704
RO_0002162: 2494525
locus tag: HBN95_RS00020
old locus tag: HBN95_00015
so part of: sequence
location: complement(3617..4357)
location: region:3617-4357:-1
so has part: feature:3617-4357:-1:exon
subclass of: SO_0000010

position:3617:-1
position: 3617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4357:-1
position: 4357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3617-4357:-1:exon

HBN95_RS00020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494525
locus tag: HBN95_RS00020
old locus tag: HBN95_00015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006343673.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CT583 family protein
translation: MSKLTKEASAFFQKNQENTTKEFLKKEFAMDVFSVSLSDIEKEQIENLVVSQHSKFDEEYNRGLASIKLLTGQIKSIQKQHVLLIGEKIYKVREILKNMDSPETTFSSWINLVFRTKSSAYNALGYYELFISLPDKTTKSLFQSIPYKTAYLLASRKGSVKDKLKVLGKISGLSNALAIDILNKFLPPLKSSQTERRIDFEEKNKEVSEKLMDILKIISSGLELSEYNKNLLHQLFEKTLKSDIRC
SIO_010081: HBN95_RS00020
subclass of: SO_0000673
so part of: HBN95_RS00020
location: complement(3617..4357)
location: region:3617-4357:-1
so has part: feature:3617-4357:-1:exon

WP_217301798.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3617-4357:-1:exon

HBN95_RS00025
type: Gene
subclass of: SO_0000704
RO_0002162: 2494525
locus tag: HBN95_RS00025
old locus tag: HBN95_00020
so part of: sequence
location: complement(4354..5133)
location: region:4354-5133:-1
so has part: feature:4354-5133:-1:exon
subclass of: SO_0000010

position:4354:-1
position: 4354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5133:-1
position: 5133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4354-5133:-1:exon

HBN95_RS00025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494525
locus tag: HBN95_RS00025
old locus tag: HBN95_00020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014951469.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKTLAFCSFKGGTGKTTLSLNIGSNLAQVSRKKVLLVDLDPQANLTTGLGVQIQDDHSLNEILRHSNEIIRAIHKTKIENLDIIPSSVLVEDFRGLNKDISLSVNHLHLALQKVQDQYDVCILDTPPSLGILAQEAFLASDYLVVCLTPEPFSILGLQKIKEFCSTIGNNLDILGIVFSFWDERNSTNSTYMDIIETIYEGKILSSKIRRDITVSRSLLKESSVINAYPNSRAAKDILNLTKEIENKLFSNEKLVQETL
SIO_010081: HBN95_RS00025
subclass of: SO_0000673
so part of: HBN95_RS00025
location: complement(4354..5133)
location: region:4354-5133:-1
so has part: feature:4354-5133:-1:exon

WP_217301792.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4354-5133:-1:exon

HBN95_RS00030
type: Gene
subclass of: SO_0000704
RO_0002162: 2494525
locus tag: HBN95_RS00030
old locus tag: HBN95_00025
so part of: sequence
location: complement(5164..5472)
location: region:5164-5472:-1
so has part: feature:5164-5472:-1:exon
subclass of: SO_0000010

position:5164:-1
position: 5164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5472:-1
position: 5472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5164-5472:-1:exon

HBN95_RS00030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494525
locus tag: HBN95_RS00030
old locus tag: HBN95_00025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012209817.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virulence factor
translation: MNDKQNMTNDFIKIVKDVEKDFPELDIKMKVHKEKITFLNSPLELYHKSISVILNLLNQIQTSLSLFPDSPIVEQMEHDNLKLKKALIMLILSRKDMFSKAE
SIO_010081: HBN95_RS00030
subclass of: SO_0000673
so part of: HBN95_RS00030
location: complement(5164..5472)
location: region:5164-5472:-1
so has part: feature:5164-5472:-1:exon

WP_217301793.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5164-5472:-1:exon

HBN95_RS00035
type: Gene
subclass of: SO_0000704
RO_0002162: 2494525
gene: pgp3
locus tag: HBN95_RS00035
old locus tag: HBN95_00030
so part of: sequence
location: complement(5567..6361)
location: region:5567-6361:-1
so has part: feature:5567-6361:-1:exon
subclass of: SO_0000010

position:5567:-1
position: 5567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6361:-1
position: 6361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5567-6361:-1:exon

HBN95_RS00035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494525
gene: pgp3
locus tag: HBN95_RS00035
old locus tag: HBN95_00030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014951470.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virulence factor Pgp3
translation: MGNSGFYLNETQNCVFADNIKLGQMQNPLQDKQLILGTTSTPTAATLNAKDGLKVDISNTQSTTATIDLSIDADALSKLILDQIQKDLVDAIIKDITNSLIQEVIDRITSDPNLALTKAFKNFSISEKIQCNGLFTKSNIGTLLGGTEIGKFTITPDNVSSMFLISADIIASRMEGNVVLALVREGDSSPCAISYGYSSGIPNVCSLRTAVNNTGTNPVTFSLRVGGMDSGVVWVNALANGDSILGTTATSNISFLEVKQQTNG
SIO_010081: HBN95_RS00035
subclass of: SO_0000673
so part of: HBN95_RS00035
location: complement(5567..6361)
location: region:5567-6361:-1
so has part: feature:5567-6361:-1:exon

WP_217301794.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5567-6361:-1:exon

HBN95_RS00040
type: Gene
subclass of: SO_0000704
RO_0002162: 2494525
locus tag: HBN95_RS00040
old locus tag: HBN95_00035
so part of: sequence
location: complement(6417..7460)
location: region:6417-7460:-1
so has part: feature:6417-7460:-1:exon
subclass of: SO_0000010

position:6417:-1
position: 6417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7460:-1
position: 7460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6417-7460:-1:exon

HBN95_RS00040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494525
locus tag: HBN95_RS00040
old locus tag: HBN95_00035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014951478.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virulence factor
translation: MVKSENQIIKSSLHLENQKFGRKPQLSEDLFELFSSICTESKIEVIGLDLQPSHYHALAAIQKLLTATNYRGNLEGSYLSRETNTFKFEGTIPRIKFTKSEYLEAYGVKKYKTSRNKNEFGGKEALIALEALYHLGNEPYLIVATRKRWNKGEEVVDRYQTFSPILRICEGWEGLTPKENKALDEEPFLNLISKKHKGFIIEPCPIIVDQIDSYFVLKPANMYQEIKLRFPNASKFTYTFIDWIVSTATRKKMNSSGLKEWPDKIEIGFENLSYTLRMNRYITSRNWKKIESAINRCIEIAIELKWLNKHERIQGKTISKKEVFYLNKSKFQQISTNKTIQNTTNTN
SIO_010081: HBN95_RS00040
subclass of: SO_0000673
so part of: HBN95_RS00040
location: complement(6417..7460)
location: region:6417-7460:-1
so has part: feature:6417-7460:-1:exon

WP_217301795.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6417-7460:-1:exon