Chlamydia buteonis strain IDL17-4553 plasmid pCbutRTH, complete sequence.
Bacteria; Chlamydiota; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.
Chlamydial infections in birds of prey presented to California wildlife rehabilitation facilities
Submitted (20-MAR-2020) Small Animal Medicine Surgery, University of Georgia, 110 Riverbend Rd, Athens, GA 30606, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP050317.1.\nBacteria and source DNA available from Infectious Diseases\nLaboratory, University of Georgia, Athens, Georgia 30606.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2017\nAssembly Method :: Velvet v. 1.2.10; HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 500.0x\nSequencing Technology :: Illumina MiSeq; PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 04:45:31\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,031\nCDSs (total) :: 987\nGenes (coding) :: 976\nCDSs (with protein) :: 976\nGenes (RNA) :: 44\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 38\nncRNAs :: 3\nPseudo Genes (total) :: 11\nCDSs (without protein) :: 11\nPseudo Genes (ambiguous residues) :: 0 of 11\nPseudo Genes (frameshifted) :: 7 of 11\nPseudo Genes (incomplete) :: 3 of 11\nPseudo Genes (internal stop) :: 5 of 11\nPseudo Genes (multiple problems) :: 3 of 11\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006343679.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011109752.1
COORDINATES: similar to AA sequence:RefSeq:WP_006343673.1
COORDINATES: similar to AA sequence:RefSeq:WP_014951469.1
COORDINATES: similar to AA sequence:RefSeq:WP_012209817.1
COORDINATES: similar to AA sequence:RefSeq:WP_014951470.1
COORDINATES: similar to AA sequence:RefSeq:WP_014951478.1