Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence.
type: Entry
definition: Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence.
sequence version: NZ_CP034332.1
sequence date: 2023-05-05
sequence: sequence
division: CON
label: NZ_CP034332.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN10518959
keyword: RefSeq
source: Tabrizicola piscis
organism: Tabrizicola piscis
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Tabrizicola.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP034332.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS HGAP Assembly v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 188.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/05/2023 02:21:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,295\nCDSs (total) :: 4,238\nGenes (coding) :: 4,194\nCDSs (with protein) :: 4,194\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 44\nCDSs (without protein) :: 44\nPseudo Genes (ambiguous residues) :: 0 of 44\nPseudo Genes (frameshifted) :: 24 of 44\nPseudo Genes (incomplete) :: 22 of 44\nPseudo Genes (internal stop) :: 2 of 44\nPseudo Genes (multiple problems) :: 4 of 44\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 8217
topology: linear
so has quality: SO_0000987
location: 1..8217
location: region:1-8217:1
RO_0002162: 2494374

NZ_CP034332
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN10518959
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequencing of Tabrizicola sp. K13M18
author: Bae, J.-W.
journal: Unpublished

2
title: Direct Submission
author: Bae, J.-W.
journal: Submitted (05-DEC-2018) Biology, Kyung Hee University, 1 Hoegi-dong, Seoul 02447, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8217:1
position: 8217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

feature:1-8217:1:source
so part of: sequence
organism: Tabrizicola piscis
mol type: genomic DNA
strain: K13M18
host: Tanakia koreensis
type material: type strain of Tabrizicola piscis
plasmid: unnamed4
country: South Korea
collection date: 2018-02-08

2494374
type: Taxonomy
SIO_000068: taxonomy

EI545_RS21215
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
gene: mobQ
locus tag: EI545_RS21215
old locus tag: EI545_21215
so part of: sequence
location: 216..1385
location: region:216-1385:1
so has part: feature:216-1385:1:exon
subclass of: SO_0000010

position:216:1
position: 216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1385:1
position: 1385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:216-1385:1:exon

EI545_RS21215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
gene: mobQ
locus tag: EI545_RS21215
old locus tag: EI545_21215
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009503753.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobQ family relaxase
translation: MASYHLSVKTVKRSAGRSATAAAAYRSASVIACEREGREHDYTAKRGVEACFILAPDDAPSWAQDRAALWNAAEARETRSNSVTAREWELALPSEISDAARIEITRAFAAQLVARYGVAADVAIHAPHREGDQRNHHAHILTTTRVLSAEGLTDKTRILDAASTGGPEIEAMRGVWAELQNHALELAGQEERVDHRSLEVQREVALSLGDTVKAEELDREPELKLGPAANAIERREQFAAEAEGREYEPLTQRGARVHAVRQAKEMFAEMRERLEMARDAWAEAREEGQGHVSAGLAALRAVAGRQAKELDQDEIKQRLARIAGRDLGADGTGHEAGADAIRDRLKQVLGREKPDPRQEQRKQEVEREKQRQLELERQRERDRDLGWEL
SIO_010081: EI545_RS21215
subclass of: SO_0000673
so part of: EI545_RS21215
location: 216..1385
location: region:216-1385:1
so has part: feature:216-1385:1:exon

WP_125327951.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:216-1385:1:exon

EI545_RS21220
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21220
old locus tag: EI545_21220
so part of: sequence
location: 1543..2370
location: region:1543-2370:1
so has part: feature:1543-2370:1:exon
subclass of: SO_0000010

position:1543:1
position: 1543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2370:1
position: 2370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1543-2370:1:exon

EI545_RS21220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21220
old locus tag: EI545_21220
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013942411.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMQKTTCFDVFAQCSDAVHNGELIESVSANDKEFHFQNWFQTRLSVLGLNFEGSGRNTYPDFSLVKFTEGYEIKGLAWPGRERDYDSNSQVPTGEHNGRHIFYVFGRYPADLKPYADQENGRKQYPVVDLVICHGDFLNADHNYIHKNKSVKGFGTYGDIMIRDRKMYVAPTPFALTQGTTGMMTLIIPEGFGEDDRFQEVGRLIRTEAATLVAGYTFDLRTNELKAEKIPNPRAGTQHHFVAYRLKTQSNKPVSMSTAKPTVVDLLDVAIGDDE
SIO_010081: EI545_RS21220
subclass of: SO_0000673
so part of: EI545_RS21220
location: 1543..2370
location: region:1543-2370:1
so has part: feature:1543-2370:1:exon

WP_125327956.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1543-2370:1:exon

EI545_RS21225
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21225
old locus tag: EI545_21225
so part of: sequence
location: 2367..4493
location: region:2367-4493:1
so has part: feature:2367-4493:1:exon
subclass of: SO_0000010

position:2367:1
position: 2367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4493:1
position: 4493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2367-4493:1:exon

EI545_RS21225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21225
old locus tag: EI545_21225
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011589357.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO process: GO:0006306 - DNA methylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA methyltransferase
translation: MKNLTVPAVFSALETDFPILEVSQLAEQESWRKEINRPLYHIHKWWATRLGSVFRAITLAALSPRGKGMWDDFYKTHNLTGKVVLDPFMGSGTTLGEGLKLGAKVVGCDINPVSTFLVRQALTPVSEVALRRAFEALEAEIAPEIRRYYQTRDPETGALIPVLYAFWVKVLDTPCGEEVPLFSRYVFAQDAYPKKKPRAQIVCPACWSIFQDRYDAIETICGDCGHNFNPQKGPAAGQNLTTSGGRTYKIKSLLPVSAPPRHRLYALMALRPDGSKIYVAAKEEDHSLFSEAAERLRTEDILLPTFPVRAGHNTDQARGYNYHAWRDFFNDRQLLCLGLLLKAIMRLEDRAIREQLLCLFSSTLEFNNLFCSFKGEGTGAVRHMFSNHILKPERTPLENSIWGTNRSSGTFMSLFESRLLRAKRYLNEPFELRLESDLLGAKAGTSKVVASAPISPRLVESWREIEAVKGSAALILNGNSAALPIPDRSIDAVITDPPYFDFVHYSELSDFFFAWLAPALKGSYPWFEREDSSAEGEVQDKDPQMFSRHLGYVFAESRRVLKDDGVLAFSFHHSRPEGWAAIYCALAQADMTVVAAHPVHAELRAASPKSAAKDPISLDAILVCRKRATVEPISYSLETIQARTSALSKRLEEGGLLLSRADYFVIAASQALIATGYECLSFDEIEQRLLEIMNAISSPEASSLAAAE
SIO_010081: EI545_RS21225
subclass of: SO_0000673
so part of: EI545_RS21225
location: 2367..4493
location: region:2367-4493:1
so has part: feature:2367-4493:1:exon

WP_125327952.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2367-4493:1:exon

EI545_RS21230
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21230
old locus tag: EI545_21230
so part of: sequence
location: 4592..5845
location: region:4592-5845:1
so has part: feature:4592-5845:1:exon
subclass of: SO_0000010

position:4592:1
position: 4592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5845:1
position: 5845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4592-5845:1:exon

EI545_RS21230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21230
old locus tag: EI545_21230
inference: COORDINATES: protein motif:HMM:NF015210.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF262 domain-containing protein
translation: MQEETQVQLLPDEALELPAEDQSVKAKPSDAVINEKYIKGDIRIVTEQARYPINTVAAMADSDSYTLSPEYQRRHRWSRDQQSRLIESLIMNVPVPPVFLYEYDFSKYEVMDGLQRLTAISEYYKGQFALTGLAEWSELNGKRYKELPDKVREGIDRRYLSSIILLKETARNEGEALRLKQLVFERLNSGGVILSHQESRNALFNGPLNEACLLLSRTPAFCRLWNIAEPTPEEIAARENKTDYTLPEDLLKNDDFRSMYDVELVLRFFANRQRLQVRQSGDSLKRFLDRYLQLGNSAFSPGTIAALSVIFVETINLIESVLGEQAFWLYRKRGKEDSETWNWLQRPTLAAYEPLMFVFSTMRERSADLTNSAQQIREGLAEFYKEKYEIFGGRNVNASDITAREQAYRTYIVSKLP
SIO_010081: EI545_RS21230
subclass of: SO_0000673
so part of: EI545_RS21230
location: 4592..5845
location: region:4592-5845:1
so has part: feature:4592-5845:1:exon

WP_125327953.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4592-5845:1:exon

EI545_RS21235
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21235
old locus tag: EI545_21235
so part of: sequence
location: 5842..6936
location: region:5842-6936:1
so has part: feature:5842-6936:1:exon
subclass of: SO_0000010

position:5842:1
position: 5842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6936:1
position: 6936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5842-6936:1:exon

EI545_RS21235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21235
old locus tag: EI545_21235
inference: COORDINATES: protein motif:HMM:NF037889.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MAE_28990/MAE_18760 family HEPN-like nuclease
translation: MRSDLLVLESELSEVSALIDSYQRAEALYPKIAALGGEHAEIIDISNDLAKGRTSQRKYQYISVIIALYGAMEQYVESLILSYARLVPVICGRFGNIPEAIRIKHHELSVDYLSEIKMNRVHEPEDTHTIVRRLSMCRIRATKYELNNRAFTLRTSNMSFDRVKTLSANISVVVSPRRLVNSQSYQSFYSEKTGGLEPALGDAEARSAFSFVDDLVAKRNRIAHGANSVDDIEDYPLLLDRIAELRMYGRALHEIFEDHAIRLAVKQARASTLGVPLHKYKGNIVCFPLETGEIRVGDVVFMLPTDENIPVRRGEALSLRVGNVALETVLGAPGANFGVKLPYNPSQTASYGILPVDVVEKLNL
SIO_010081: EI545_RS21235
subclass of: SO_0000673
so part of: EI545_RS21235
location: 5842..6936
location: region:5842-6936:1
so has part: feature:5842-6936:1:exon

WP_125327954.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5842-6936:1:exon

EI545_RS21240
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21240
old locus tag: EI545_21240
so part of: sequence
location: 7308..7847
location: region:7308-7847:1
so has part: feature:7308-7847:1:exon
subclass of: SO_0000010

position:7308:1
position: 7308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7847:1
position: 7847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7308-7847:1:exon

EI545_RS21240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21240
old locus tag: EI545_21240
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011655531.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MIIGYARVSTDDQNLDGQLDALKAAGAERIFADKITGTARSRPELDRLLDQLRQGDVITVTKYDRLARSLRDLLDIVDTIQAHGAGFRSLAEDIDTTTPAGRLVFHVFASIAQFERERISERTKEGLEAARKRGRVGGRPPALSTAQRTEVRRMRDDELRPLPEIAQLFRVSAKTIRRA
SIO_010081: EI545_RS21240
subclass of: SO_0000673
so part of: EI545_RS21240
location: 7308..7847
location: region:7308-7847:1
so has part: feature:7308-7847:1:exon

WP_125327955.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7308-7847:1:exon

EI545_RS21245
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21245
old locus tag: EI545_21245
so part of: sequence
location: 7953..>8217
location: region:7953-8217:1
so has part: feature:7953-8217:1:exon
subclass of: SO_0000010

position:7953:1
position: 7953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7953-8217:1:exon

EI545_RS21245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21245
old locus tag: EI545_21245
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009175520.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MYVITFANPKGGSGKTTSAMLLAEQIALSGGRVAILDLDPNANILGWARGREEAGRSLPFSVHARPQIEDTVGLIDEMAAQADYLIID
SIO_010081: EI545_RS21245
subclass of: SO_0000673
so part of: EI545_RS21245
location: 7953..>8217
location: region:7953-8217:1
so has part: feature:7953-8217:1:exon

WP_164517424.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7953-8217:1:exon