Tabrizicola piscis strain K13M18 plasmid unnamed3, complete sequence.
type: Entry
definition: Tabrizicola piscis strain K13M18 plasmid unnamed3, complete sequence.
sequence version: NZ_CP034331.1
sequence date: 2023-05-05
sequence: sequence
division: CON
label: NZ_CP034331.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN10518959
keyword: RefSeq
source: Tabrizicola piscis
organism: Tabrizicola piscis
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Tabrizicola.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP034331.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS HGAP Assembly v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 188.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/05/2023 02:21:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,295\nCDSs (total) :: 4,238\nGenes (coding) :: 4,194\nCDSs (with protein) :: 4,194\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 44\nCDSs (without protein) :: 44\nPseudo Genes (ambiguous residues) :: 0 of 44\nPseudo Genes (frameshifted) :: 24 of 44\nPseudo Genes (incomplete) :: 22 of 44\nPseudo Genes (internal stop) :: 2 of 44\nPseudo Genes (multiple problems) :: 4 of 44\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 21457
topology: circular
so has quality: SO_0000988
location: 1..21457
location: region:1-21457:1
RO_0002162: 2494374

NZ_CP034331
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN10518959
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequencing of Tabrizicola sp. K13M18
author: Bae, J.-W.
journal: Unpublished

2
title: Direct Submission
author: Bae, J.-W.
journal: Submitted (05-DEC-2018) Biology, Kyung Hee University, 1 Hoegi-dong, Seoul 02447, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21457:1
position: 21457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21457:1:source
so part of: sequence
organism: Tabrizicola piscis
mol type: genomic DNA
strain: K13M18
host: Tanakia koreensis
type material: type strain of Tabrizicola piscis
plasmid: unnamed3
country: South Korea
collection date: 2018-02-08

2494374
type: Taxonomy
SIO_000068: taxonomy

EI545_RS21110
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21110
old locus tag: EI545_21110
so part of: sequence
location: complement(join(20981..21457,1..549))
location: region:1-21457:-1
so has part: feature:1-549:-1:exon
so has part: feature:20981-21457:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21457:-1
position: 21457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-549:-1:exon

position:549:-1
position: 549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:20981-21457:-1:exon

position:20981:-1
position: 20981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

EI545_RS21110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21110
old locus tag: EI545_21110
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018426322.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LysR family transcriptional regulator
translation: MGRLKKNSRLNPPSHQLSLGRIPLASLIQTLAVAEHLSFYRAAQALGTSQSNVSARIKALEQDLGILLFERNTRGVRLTEAGRLFVERVAVGVNQLDHAVKTAGMAASGECGRLRVGIHALMPRSFLAELIAQYREDHPDIEVEITEGTAREAVMQLRADELDVAFVAGAPELPDYHARPIWTEPLVVVLPEDHRLAGRPEITWADLVGETFLVRHGGTGPQVHDHIVLRLAGLWPAPSIQRFDVGRGTLLSMVGQGFGVTIVSAATAQLPSTGIMFLPLADEPEPVPFSAVWSPFNRNAALRNLLMLAGTMGRQGDSRSRPRSSNRATANTEATRPIYRR
SIO_010081: EI545_RS21110
subclass of: SO_0000673
so part of: EI545_RS21110
location: complement(join(20981..21457,1..549))
location: region:1-21457:-1
so has part: feature:1-549:-1:exon
so has part: feature:20981-21457:-1:exon

WP_071166955.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-549:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:20981-21457:-1:exon

EI545_RS21115
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
gene: tet(G)
locus tag: EI545_RS21115
old locus tag: EI545_21115
so part of: sequence
location: complement(571..1746)
location: region:571-1746:-1
so has part: feature:571-1746:-1:exon
subclass of: SO_0000010

position:571:-1
position: 571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1746:-1
position: 1746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:571-1746:-1:exon

EI545_RS21115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
gene: tet(G)
locus tag: EI545_RS21115
old locus tag: EI545_21115
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011931119.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tetracycline efflux MFS transporter Tet(G)
translation: MHSSAIIALLIVGLDAMGLGLIMPVLPALLRELVPTEQVAGHYGALLSLYALMQVVFAPLLGQLSDAYGRRPVLLASLAGAAVDYTIMASAPVLWVLYIGRLVSGVTGATGAVAASTIADSTGEGSRAQWFGYMGACYGTGMIAGPALGGMLGGISAHAPFVAAALLNGIAFLLACIFLRETRRGDGETGKPVRIKPFVLFRLDDALRGLAALFAVFFIIQLIGQVPAALWVIYGEDRFQWDTTTVGLSLAAFGATHAIFQAFVTGPLSRRLGERYTLLFGMAADATGFILLAFATQGWMVFPILLLLAAGGVGMPALQAMLSNNVSNNKQGVLQGTLTSLTNLSAIAGPLGFTALYSATAGAWNGWVWIVGAFLYVVCLPMLRRPFATSS
SIO_010081: EI545_RS21115
subclass of: SO_0000673
so part of: EI545_RS21115
location: complement(571..1746)
location: region:571-1746:-1
so has part: feature:571-1746:-1:exon

WP_071166956.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:571-1746:-1:exon

EI545_RS21120
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21120
old locus tag: EI545_21120
so part of: sequence
location: complement(2006..3361)
location: region:2006-3361:-1
so has part: feature:2006-3361:-1:exon
subclass of: SO_0000010

position:2006:-1
position: 2006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3361:-1
position: 3361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2006-3361:-1:exon

EI545_RS21120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21120
old locus tag: EI545_21120
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011997539.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS1380-like element ISPme1 family transposase
translation: MDHLEGAGLARGDRVDFDRRVRLEFRGAQISSDGGLLVMRELDDVLGLSNLASEALRDSRTGKNTLHRLDGLFRQSVFGRLAGYEDVNDADRLALDPVMRQVVGGRAVEAQAASASQMGRFETETLALAANRAALADLNGQWIDRFHDRNGLKYIVLDMDSSVSPTHGDQEGAAWNGHFDCTCYHPIFLFNQFGMLERCALRNGNVHSADGWRDVLDPVIARYAGRDLGGRFFRADAAYAIPAIYMRLEEARFFYAIRLPANAVLREKIAHRLTRPVGRPSLTKVKRFFEDFEYQAASWDKPRRVIAKIEWHPGELFPKVGFIVTNLPMEPDWVVRFYNQRGTAEQHIKEGKYAFRWTRLSCRKFRHNEVRLQLHALAYNLATFLRCIELPEAMADWSLTSLQLKLIKIGARVVRHARAITFQLAEVAVTGPMVRAVLAAIRRLRTPPSCA
SIO_010081: EI545_RS21120
subclass of: SO_0000673
so part of: EI545_RS21120
location: complement(2006..3361)
location: region:2006-3361:-1
so has part: feature:2006-3361:-1:exon

WP_012112698.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2006-3361:-1:exon

EI545_RS21125
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21125
old locus tag: EI545_21125
so part of: sequence
location: 3556..4317
location: region:3556-4317:1
so has part: feature:3556-4317:1:exon
subclass of: SO_0000010

position:3556:1
position: 3556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4317:1
position: 4317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3556-4317:1:exon

EI545_RS21125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21125
old locus tag: EI545_21125
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MADQDDRIPITPPAQYQGRDLTRTIAESMAEIVPGGGIVTGLLREVIPSKTDQSREDWESAITERSNQHGERLDRHEDMLAPSETITGLPAQLLVRLAQECPDGLSMQDYDLDALSALFPDEDRQSIKDAVSDLKALGLLKSWDFIGGWRIALAEDAYEQVDPHVMGWDTNADAVEIARLMLAEDTGHAPELHEKTGWSKRRFNPAFRLLLPLFPEGRIRQVIQPDYPSLGVVLADDDRAKLRRLITKAGAAG
SIO_010081: EI545_RS21125
subclass of: SO_0000673
so part of: EI545_RS21125
location: 3556..4317
location: region:3556-4317:1
so has part: feature:3556-4317:1:exon

WP_125327934.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3556-4317:1:exon

EI545_RS21130
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21130
old locus tag: EI545_21130
so part of: sequence
location: 4314..5276
location: region:4314-5276:1
so has part: feature:4314-5276:1:exon
subclass of: SO_0000010

position:4314:1
position: 4314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5276:1
position: 5276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4314-5276:1:exon

EI545_RS21130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21130
old locus tag: EI545_21130
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020817756.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MSIVHADPLCPPALPALIADAGDRTRMRFIEFFAANIRNPNTRRAYARAICDFLAWCHDHGIASIGAVQPIHVATWVEHLTVELSAPTVKQRLAAIRHLFDWLVTGQIVPVNPSASVRGPSHQVRRGKTPVLEPSEARALLDGINVSTIAGLRDRALIGLMVYSFARIGAALDMKIEDVYVQQRRLWVRLHEKGGKRHDMPCHHNLETYLHAYIEAAGLGGDLRGPLFRTIGRGTDQLTMTPLPQANAYAMVRRRAKAASIATRIGNHSFRATGITAYLKNGGTLEKAAQMANHASTRTTQLYDRRSDDVSLDEVERVLI
SIO_010081: EI545_RS21130
subclass of: SO_0000673
so part of: EI545_RS21130
location: 4314..5276
location: region:4314-5276:1
so has part: feature:4314-5276:1:exon

WP_125327935.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4314-5276:1:exon

EI545_RS21135
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21135
old locus tag: EI545_21135
so part of: sequence
location: 5542..5871
location: region:5542-5871:1
so has part: feature:5542-5871:1:exon
subclass of: SO_0000010

position:5542:1
position: 5542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5871:1
position: 5871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5542-5871:1:exon

EI545_RS21135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21135
old locus tag: EI545_21135
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010511873.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HigA family addiction module antitoxin
translation: MDQDSRADKAAHPGPFVWSEVIQPHGLSVTDAALALGVTRPALSKFLNGRASLSPEMALRLEKAFGIAMDVLMRMQSSYDIAEARKREQKIHVLPFQGRRSLHQLKSAS
SIO_010081: EI545_RS21135
subclass of: SO_0000673
so part of: EI545_RS21135
location: 5542..5871
location: region:5542-5871:1
so has part: feature:5542-5871:1:exon

WP_125327936.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5542-5871:1:exon

EI545_RS21140
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21140
old locus tag: EI545_21140
so part of: sequence
location: 5916..7484
location: region:5916-7484:1
so has part: feature:5916-7484:1:exon
subclass of: SO_0000010

position:5916:1
position: 5916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7484:1
position: 7484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5916-7484:1:exon

EI545_RS21140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21140
old locus tag: EI545_21140
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005870016.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO process: GO:0006306 - DNA methylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: N-6 DNA methylase
translation: MTLALGAAEAGGPMSAAEMALARTVTGQSVDARQIADIRCRIMAGADPLGDAFSALRSPDTRRENGATYTPAPIVKTMVDWAANTRTPCRVVDPGVGSARFLALAGARFPDAELIGIDIDPLAALMARANLAVSGSGKRARIILGDYRRFNEQVDGSTLYIGNPPYVRHHQIAAPWKEWLAAEAAKLKLTASKLAGLHVYFFLATASSAKPKDFGAFITASEWLDVNYGALVRSLMLGRLGGKSVTVIEPTAQPFPDAATTAAITTFDIGAKPTSVYFRRIEDLASLDELGKGRRVHRDRLAAEGRWSHLTRSSEKPPEGYVELGELCRVHRGTVTGANGVWIAGEHSIGLPEAVLFPTITRAREVLEADGLLSDPHRLRRVIDLPADLDELDASARKAVEKFLKVARAMGAHTGYVARNRRAWWAVGLRVAAPIISTYMARRPPGFILNKADARHINIAHGLYPREHLGEAVQKRLVAFLQTNISQKSGRTYAGGLTKFEPREMERLIVPGPALLAAGVTS
SIO_010081: EI545_RS21140
subclass of: SO_0000673
so part of: EI545_RS21140
location: 5916..7484
location: region:5916-7484:1
so has part: feature:5916-7484:1:exon

WP_245990456.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5916-7484:1:exon

EI545_RS21145
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21145
old locus tag: EI545_21145
so part of: sequence
location: 7481..8395
location: region:7481-8395:1
so has part: feature:7481-8395:1:exon
subclass of: SO_0000010

position:7481:1
position: 7481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8395:1
position: 8395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7481-8395:1:exon

EI545_RS21145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21145
old locus tag: EI545_21145
EC number: 3.1.21.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010695574.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO process: GO:0009307 - DNA restriction-modification system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: XamI family restriction endonuclease
translation: MIDPPIWTDDQLESARSKAIAAFSKERLEEPLEDYLEAFDEYQGHIEVVLETTVDLTELDTTALDVLGDPRLLEAFRYLAGPPISEDDLKVLADASSLARSTLEGKPELVQRLIGVVRQVLDRRRFAWVVERREPTEAERNAAVLASAALMAASRAQTRRRTLGKDQQEEMVKAALRELGFMEVPSRTIKTISHAPSPGQFCGESVLGNRKGDIIVRLWDDRVMPIECKVSNSSTNSVKRLNNDAAVKATSWKTDFGLRQVVPSAVLSGVYKLHNLRDAQERGLALFWAHDLTPLTEWITRTKP
SIO_010081: EI545_RS21145
subclass of: SO_0000673
so part of: EI545_RS21145
location: 7481..8395
location: region:7481-8395:1
so has part: feature:7481-8395:1:exon

WP_125327938.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7481-8395:1:exon

EI545_RS21150
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21150
old locus tag: EI545_21150
so part of: sequence
location: 8481..9140
location: region:8481-9140:1
so has part: feature:8481-9140:1:exon
subclass of: SO_0000010

position:8481:1
position: 8481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9140:1
position: 9140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8481-9140:1:exon

EI545_RS21150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21150
old locus tag: EI545_21150
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020811218.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MPTVVIASPKGGAGKSTTAVLLGTELAHAGASVVMLDCDPNHSLTLWADRAPLPDRIKVLSNVAESDIVKTIKQHDTDGQIVVVDLEGVASRLVSRAISQADLVITPMRATTLDATIGVRALQLIAEEEEALDRRIPHAVVFTMTKAVRSKQHTGIAESLAAQGVDLIDPPLMERAAFSALFEFGGNLRSMPAQGNMDGAVENAALFAQAVYKRLAEGV
SIO_010081: EI545_RS21150
subclass of: SO_0000673
so part of: EI545_RS21150
location: 8481..9140
location: region:8481-9140:1
so has part: feature:8481-9140:1:exon

WP_125327939.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8481-9140:1:exon

EI545_RS21155
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21155
old locus tag: EI545_21155
so part of: sequence
location: 9142..9438
location: region:9142-9438:1
so has part: feature:9142-9438:1:exon
subclass of: SO_0000010

position:9142:1
position: 9142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9438:1
position: 9438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9142-9438:1:exon

EI545_RS21155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21155
old locus tag: EI545_21155
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020811217.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome partitioning protein ParB
translation: MSDGKAFNIDLGRLKSREKDRSPQAIEKAERAGEELGFVARDGQKRRGRKPSPRTGQVHAKVMPDISEEIANEAKRRGVQQGVLIEEAWTLYKEKSGI
SIO_010081: EI545_RS21155
subclass of: SO_0000673
so part of: EI545_RS21155
location: 9142..9438
location: region:9142-9438:1
so has part: feature:9142-9438:1:exon

WP_125327940.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9142-9438:1:exon

EI545_RS21160
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21160
old locus tag: EI545_21160
so part of: sequence
location: complement(9441..10484)
location: region:9441-10484:-1
so has part: feature:9441-10484:-1:exon
subclass of: SO_0000010

position:9441:-1
position: 9441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10484:-1
position: 10484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9441-10484:-1:exon

EI545_RS21160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21160
old locus tag: EI545_21160
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008671343.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MSDDHVVNRSPLLPDRYPQGDFFVCDIFDAVPKADMASMEHPIFSLSTKPDTRVREYEHNGIKIAIKPSVDGLATVHDRDVLIYCISQLMTALNDGKEVSQVVRFRAFDMLVATNRNTAGSGYSQLKAALERLAGTRISTNIVTGGKEIFRTFGLIESAEVVRETRDGRMQEVEIKLSDWVFNAIRSKEVLTLHRDYFRLRKPLERRIYELARKHCGAQKEWRISLALLQKKCGSNSTPREFRRLVMNIVREDREHDHMPDYAISYDEQEDMVTFSNRQGVKMVLPPAVAPHLDPDVYETARMLAPGFDVYYLEREWRSWLPETPRNPEAAFLGFCRKWVQNRKNTG
SIO_010081: EI545_RS21160
subclass of: SO_0000673
so part of: EI545_RS21160
location: complement(9441..10484)
location: region:9441-10484:-1
so has part: feature:9441-10484:-1:exon

WP_125327941.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9441-10484:-1:exon

EI545_RS21165
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21165
old locus tag: EI545_21165
so part of: sequence
location: complement(10757..11311)
location: region:10757-11311:-1
so has part: feature:10757-11311:-1:exon
subclass of: SO_0000010

position:10757:-1
position: 10757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11311:-1
position: 11311
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10757-11311:-1:exon

EI545_RS21165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21165
old locus tag: EI545_21165
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPEAGSASPALSLAALGEMLDLLGVVVAKMSEKLDQHGETLAAVQKTALESRDAAQAAKTFADPQRYGRHIGNEIDKALAVPLDRLEGLHLGLTADRRDASRALDELVRQEEQSLQRLRDDLTRAGRWKKRAPLIALFGLVLALGLTIALPRFMAGNGTGCTVLGGEWLRGPETGKQACVFYAG
SIO_010081: EI545_RS21165
subclass of: SO_0000673
so part of: EI545_RS21165
location: complement(10757..11311)
location: region:10757-11311:-1
so has part: feature:10757-11311:-1:exon

WP_164517420.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10757-11311:-1:exon

EI545_RS21170
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21170
old locus tag: EI545_21170
so part of: sequence
location: complement(11368..12975)
location: region:11368-12975:-1
so has part: feature:11368-12975:-1:exon
subclass of: SO_0000010

position:11368:-1
position: 11368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12975:-1
position: 12975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11368-12975:-1:exon

EI545_RS21170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21170
old locus tag: EI545_21170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009824540.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MVIATAFAWFAWLIVIIILSDLAVGEALWHWFVFWPMTITSWIIGASDWSNRTGIKLWGRRPSDSHGSARFATRKERAVFEGGDGLLIGRDLDTGKLLRYDGPAHLLTLAPTRAGKGVGTVIPNLLLAERSVLVIDPKGENAKIAGEARKRFGAVHILDPFGVTGMPASAYNPLGRLDAESLDLGEDAASLAEALVMDPPGQQSEAHWNEEAKALLAGLIMFAVAHEDQDRKTLATVREYLTLPPEKFRALLELMQDSTAVGGLIARAANRFLGKSDREAASVLSSAQRHTHFLDSPRIVAATARSDFQFSALRHDLTSIFLVLPPNRLDAYSRWLRLLVAQALQDIARDAEHRTTHGNDAEAAQAGSQRLKQPALFLLDEFAALGRLEAVERAMGLMAGYGLQLWPILQDMSQLKDLYGARANTFVANAGVLQTFGVNDFETAKWLSQMIGRETTGYQTESHKPGDAPSTSYNVTARDLMTPDEIMQIPPHVQLLRVQGKPVMIARKLRYFADKEFDGLHRSSDAQPSDPKSEP
SIO_010081: EI545_RS21170
subclass of: SO_0000673
so part of: EI545_RS21170
location: complement(11368..12975)
location: region:11368-12975:-1
so has part: feature:11368-12975:-1:exon

WP_125327950.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11368-12975:-1:exon

EI545_RS21175
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21175
old locus tag: EI545_21175
so part of: sequence
location: complement(13138..13440)
location: region:13138-13440:-1
so has part: feature:13138-13440:-1:exon
subclass of: SO_0000010

position:13138:-1
position: 13138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13440:-1
position: 13440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13138-13440:-1:exon

EI545_RS21175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21175
old locus tag: EI545_21175
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009824541.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: mobilization protein
translation: MTETELERAEKRYSQAKARLLALKNREATKARKLDTRRKIILGGALVDLAERDSYAAAMIERLVRNLPREQDRKAFEDWDAKQPAAASSATAPPVPTPST
SIO_010081: EI545_RS21175
subclass of: SO_0000673
so part of: EI545_RS21175
location: complement(13138..13440)
location: region:13138-13440:-1
so has part: feature:13138-13440:-1:exon

WP_125327943.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13138-13440:-1:exon

EI545_RS21180
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
gene: mobQ
locus tag: EI545_RS21180
old locus tag: EI545_21180
so part of: sequence
location: 14069..15241
location: region:14069-15241:1
so has part: feature:14069-15241:1:exon
subclass of: SO_0000010

position:14069:1
position: 14069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15241:1
position: 15241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14069-15241:1:exon

EI545_RS21180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
gene: mobQ
locus tag: EI545_RS21180
old locus tag: EI545_21180
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014357864.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobQ family relaxase
translation: MASYHLSVKTIKRSAGRSATAAAAYRSASVIACDREGRMHDYTAKRGVEACFILAPKDAPDWALDRAALWNAAEARETRSNSVTAREWELALPSELSDAARIEIARAFAAQLVERYGVAADVAIHAPHREGDQRNHHAHILTTTRVLSAEGLTDKTRILDAASTGGPEIEAMRGYWAELQNHALELAGQEERVDHRSLEVQREIALSMGDTVKAEELDREPELKLGPAANAIERRAQLAAEAEGRDYEPLTQRGARVHAVRQAKAMFAEMRGRLELARDAWAEAREEGQGHVSAGLAALRAVAGRQAKELDPYEIKERLAMIAGREQAEEHDHAPGQASRDIRGRLADVLGKARAEDQEREKARQKEREQELDEECRRQRERHRDLGWEL
SIO_010081: EI545_RS21180
subclass of: SO_0000673
so part of: EI545_RS21180
location: 14069..15241
location: region:14069-15241:1
so has part: feature:14069-15241:1:exon

WP_125327944.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14069-15241:1:exon

EI545_RS21185
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21185
old locus tag: EI545_21185
so part of: sequence
location: complement(15330..16640)
location: region:15330-16640:-1
so has part: feature:15330-16640:-1:exon
subclass of: SO_0000010

position:15330:-1
position: 15330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16640:-1
position: 16640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15330-16640:-1:exon

EI545_RS21185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21185
old locus tag: EI545_21185
EC number: 5.1.1.1
inference: COORDINATES: protein motif:HMM:NF013345.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alanine racemase
translation: MPGSSTAADVNVWSSDRWSAFSAKLLNTDCSNMSAGLLVGIDQSALVHNFKTVQQRVAPRQVCAVLKSDAYGHGIDNVVSAIAPACALYSVTETWEARRVRALAGDHARIFRMKIATSSELRDAIQHRLGVVEMAGSLGKARELSEVSRSLGVDTAVQLILDVAGLGRNGLPISSDANIAKDLDYLLGLPNLKIASIGAHIPNPDDCVPTDCDNVVVRAARRFLRLAGGLADHIAASGRDRPALDLFSSASSVALDRTLTRVERETLSFDRIGTSLYGNAASDAFQETGLRQVMHAFAPVCDVFRRPQGATIGYCEHYRVGDLGEDIALLGIGWQTLGREFQGVGMSLTPTFVKNLYNGTHFLVGRQSMNIITLRARDETGRTLIAGDLVGVLSSPEFAGLTGIDTASLSARMGDCQPEYITHLIGRSAASVRFSF
SIO_010081: EI545_RS21185
subclass of: SO_0000673
so part of: EI545_RS21185
location: complement(15330..16640)
location: region:15330-16640:-1
so has part: feature:15330-16640:-1:exon

WP_125327945.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15330-16640:-1:exon

EI545_RS21190
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21190
old locus tag: EI545_21190
so part of: sequence
location: complement(16672..17607)
location: region:16672-17607:-1
so has part: feature:16672-17607:-1:exon
subclass of: SO_0000010

position:16672:-1
position: 16672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17607:-1
position: 17607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16672-17607:-1:exon

EI545_RS21190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21190
old locus tag: EI545_21190
inference: COORDINATES: protein motif:HMM:NF013088.2
GO function: GO:0005215 - transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DMT family transporter
translation: MQTKSAPTRLNNLIALLLVITGTAAFSVVFASAKLLGSGDLTWQIIFIRYLSGFMVVSVIALAYDRSLAATKSDNVRLHMVRAFCGGSGGAAAIFAATQIPIAHATTIGLLDGVILVLLGVVFLRERLDGLIALVLLLCCVGAYIVVRSQSSVPEPIVSPTVAYIVAFMGAVLVALEGLFIKVLSSKERVLNVLWHVNLFGSVIFAFPAFLYWTEVNMTQFVLIAMLGPLALFGQLCNILGYRMADLKIVAPANYTWIIFAALLGYFVFDESLTLETLVGTALIVLGGILLCFHHDLMKLRLVVATRRKDL
SIO_010081: EI545_RS21190
subclass of: SO_0000673
so part of: EI545_RS21190
location: complement(16672..17607)
location: region:16672-17607:-1
so has part: feature:16672-17607:-1:exon

WP_164517421.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16672-17607:-1:exon

EI545_RS21195
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21195
old locus tag: EI545_21195
so part of: sequence
location: complement(17630..18691)
location: region:17630-18691:-1
so has part: feature:17630-18691:-1:exon
subclass of: SO_0000010

position:17630:-1
position: 17630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18691:-1
position: 18691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17630-18691:-1:exon

EI545_RS21195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21195
old locus tag: EI545_21195
inference: COORDINATES: protein motif:HMM:NF012512.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: pyridoxal-phosphate dependent enzyme
translation: MLDNINHLHCRPKLVRLSSNLTAAQFDLMKMVPARKIILDAMDQGRLIQGGHVVESSSGTFALALAILSSALDFRLTLVTGPLDSALKWRLTQLGAQLEIVPDGIGYQGGIQQKRLDRLADILRDDPSAFWPQQYENPSNPASYSDLAALFQLEVGDVDILVATVGSGGSISGTSRYLRAAGRALEVHAVDHNLSVLFGSSPASVQSLCHECYEPLLGMGADIVIGNLDHTQCDVVHWVPVALMINAVHKLHRETGLLVGPTAGAAYVVADWLARENPTKTVVTIFPDHGIRYLSSVFSADWLQPRAGMLTYQQSAPVNVDHPTGVDGRWCSFDWARRSYVDVLGYPPRPKGA
SIO_010081: EI545_RS21195
subclass of: SO_0000673
so part of: EI545_RS21195
location: complement(17630..18691)
location: region:17630-18691:-1
so has part: feature:17630-18691:-1:exon

WP_164517422.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17630-18691:-1:exon

EI545_RS21200
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21200
old locus tag: EI545_21200
so part of: sequence
location: complement(18684..19691)
location: region:18684-19691:-1
so has part: feature:18684-19691:-1:exon
subclass of: SO_0000010

position:18684:-1
position: 18684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19691:-1
position: 19691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18684-19691:-1:exon

EI545_RS21200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21200
old locus tag: EI545_21200
inference: COORDINATES: protein motif:HMM:NF012509.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GHMP kinase
translation: MAKSEKLANSAMQLVFEPGSRDDDRVHVACASGHFGEFLQGAFHDQEGAVRRGLVTVPCTELWSRGFGRFVNKSDDIIAPTLKTKAGRAMQFYLARYAPAPRRAVQVVLESNIPVEIGLGSSTTDIVATLRVLDRLFGRCTSDEEVAKIAVSSEGASDATMFDDRVVLFAQRDGTILEEYGSTWPSLEIIGLNLAPSERFSTDANPPCDYEPAEVTEFDALRQRLRVAIRQSDANGLAEIAMRSAEINQRYYPQQNFPHLVALAAAMDACGFIIAHTGTVAGLLFRSCQTINDDGVKEIADRAAAFGASYHLRFAVGFHSIASEKPPAFGDQINA
SIO_010081: EI545_RS21200
subclass of: SO_0000673
so part of: EI545_RS21200
location: complement(18684..19691)
location: region:18684-19691:-1
so has part: feature:18684-19691:-1:exon

WP_125327948.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18684-19691:-1:exon

EI545_RS21205
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21205
old locus tag: EI545_21205
so part of: sequence
location: complement(19678..20334)
location: region:19678-20334:-1
so has part: feature:19678-20334:-1:exon
subclass of: SO_0000010

position:19678:-1
position: 19678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20334:-1
position: 20334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19678-20334:-1:exon

EI545_RS21205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21205
old locus tag: EI545_21205
inference: COORDINATES: protein motif:HMM:NF013052.2
GO function: GO:0005515 - protein binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SET domain-containing protein-lysine N-methyltransferase
translation: MNATVAQPVHFGLQSVPCARAINNRNVAVRLADNVKGRGVFAIRDHLPGEVVLIGLIESLADRRTNHSIQLDWNVHANFEEPASLINHSCLPNTFVSPNRFGAYDFIALRAIASGEELSFDYATTEYESIAVPNCACGSPACRGSSGGFSVLDSTHELTAYGFIAPYLLRGTPTSNLVLQGDFDITPTGVPWPPQANIAARWIAFQQQTGSTASNGQI
SIO_010081: EI545_RS21205
subclass of: SO_0000673
so part of: EI545_RS21205
location: complement(19678..20334)
location: region:19678-20334:-1
so has part: feature:19678-20334:-1:exon

WP_164517423.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19678-20334:-1:exon

EI545_RS21210
type: Gene
subclass of: SO_0000704
RO_0002162: 2494374
locus tag: EI545_RS21210
old locus tag: EI545_21210
pseudo: true
so part of: sequence
location: complement(<20337..20885)
location: region:20337-20885:-1
so has part: feature:20337-20885:-1:exon
subclass of: SO_0000010

position:20337:-1
position: 20337
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:20885:-1
position: 20885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20337-20885:-1:exon

EI545_RS21210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2494374
locus tag: EI545_RS21210
old locus tag: EI545_21210
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010336158.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
SIO_010081: EI545_RS21210
subclass of: SO_0000673
so part of: EI545_RS21210
location: complement(<20337..20885)
location: region:20337-20885:-1
so has part: feature:20337-20885:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20337-20885:-1:exon