Tabrizicola piscis strain K13M18 plasmid unnamed2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Tabrizicola.
Complete genome sequencing of Tabrizicola sp. K13M18
Submitted (05-DEC-2018) Biology, Kyung Hee University, 1 Hoegi-dong, Seoul 02447, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP034330.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS HGAP Assembly v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 188.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/05/2023 02:21:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,295\nCDSs (total) :: 4,238\nGenes (coding) :: 4,194\nCDSs (with protein) :: 4,194\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 44\nCDSs (without protein) :: 44\nPseudo Genes (ambiguous residues) :: 0 of 44\nPseudo Genes (frameshifted) :: 24 of 44\nPseudo Genes (incomplete) :: 22 of 44\nPseudo Genes (internal stop) :: 2 of 44\nPseudo Genes (multiple problems) :: 4 of 44\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_009628267.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
MSMEG_0572 family nitrogen starvation response protein
COORDINATES: similar to AA sequence:RefSeq:WP_013168484.1
GO:0000257 - nitrilase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009573653.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]; GO:0046500 - S-adenosylmethionine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008495305.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009573655.1
GO:0003824 - catalytic activity [Evidence IEA]
sll0787 family AIR synthase-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_013689255.1
MSMEG_0570 family nitrogen starvation response protein
COORDINATES: similar to AA sequence:RefSeq:WP_008884897.1
MSMEG_0569 family flavin-dependent oxidoreductase
COORDINATES: protein motif:HMM:TIGR04098.1
COORDINATES: similar to AA sequence:RefSeq:WP_015499144.1
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009285961.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF025605.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005848978.1
COORDINATES: similar to AA sequence:RefSeq:WP_007257212.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749186.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008335662.1
COORDINATES: similar to AA sequence:RefSeq:WP_010443760.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020043034.1
GO:0110001 - toxin-antitoxin complex [Evidence IEA]
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_013069292.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015494975.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008837363.1
COORDINATES: similar to AA sequence:RefSeq:WP_003605301.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008280889.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002624936.1
COORDINATES: similar to AA sequence:RefSeq:WP_009551433.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
This protein belongs to a clade of uncharacterized proteins related to peroxidases such as the alkylhydroperoxidase AhpD; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013315.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024874.2
COORDINATES: similar to AA sequence:RefSeq:WP_009574211.1
COORDINATES: similar to AA sequence:RefSeq:WP_013637301.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
PLP-dependent aminotransferase family protein