Fluviispira sanaruensis strain RF1110005 plasmid 68K, complete sequence.
Bacteria; Bdellovibrionota; Oligoflexia; Silvanigrellales; Silvanigrellaceae; Fluviispira.
Rubrispira sanarue gen. nov., sp., nov., a member of the order Silvanigrellales, isolated from a brackish lake in Hamamatsu Japan
Submitted (06-DEC-2018) Contact:Masaki Shintani Graduate School of Engineering, Shizuoka University; Naka-ku, Johoku, Hamamatsu, Shizuoka 432-8561, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP019370.1.\nAnnotated by DFAST v.1.0.7 (https://dfast.nig.ac.jp).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.11.1\nGenome Coverage :: 131X\nSequencing Technology :: Illumina Miseq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/05/2023 02:36:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,177\nCDSs (total) :: 3,115\nGenes (coding) :: 3,109\nCDSs (with protein) :: 3,109\nGenes (RNA) :: 62\nrRNAs :: 6, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 5, 5 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 3\nPseudo Genes (total) :: 6\nCDSs (without protein) :: 6\nPseudo Genes (ambiguous residues) :: 0 of 6\nPseudo Genes (frameshifted) :: 0 of 6\nPseudo Genes (incomplete) :: 2 of 6\nPseudo Genes (internal stop) :: 4 of 6\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
strain coidentity: RF1110005 = JCM 31447
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF014273.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_006424493.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF033527.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF018024.2
COORDINATES: protein motif:HMM:NF024083.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF025854.2
GO:0005515 - protein binding [Evidence IEA]
leucine-rich repeat domain-containing protein
COORDINATES: protein motif:HMM:NF012292.2
COORDINATES: protein motif:HMM:NF021897.2
type IV secretion system DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF041492.1
COORDINATES: protein motif:HMM:NF024754.2
COORDINATES: protein motif:HMM:NF016362.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018148.2
COORDINATES: protein motif:HMM:NF017843.2
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: protein motif:HMM:NF024671.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011445843.1
GO:1990814 - DNA/DNA annealing activity [Evidence IEA]
GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010957481.1