Strigops habroptila isolate Jane chromosome 20, bStrHab1.2.pri, whole genome shotgun sequence.
type: Entry
definition: Strigops habroptila isolate Jane chromosome 20, bStrHab1.2.pri, whole genome shotgun sequence.
sequence version: NC_044296.2
sequence date: 2020-03-26
sequence: sequence
division: CON
label: NC_044296.2
type: RefSeq
SIO_000068: refseq
dblink: PRJNA558775
dblink: SAMN09948751
keyword: WGS
keyword: RefSeq
source: Strigops habroptila (Kakapo)
organism: Strigops habroptila
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Psittaciformes; Psittacidae; Strigops.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM013782.2.\nOn Mar 26, 2020 this sequence version replaced NC_044296.1.\nAssembly name: bStrHab1.2.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2020/03/04. The original whole-genome shotgun project has the\naccession RXXE00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 08-NOV-2019\nAssembly Method :: FALCON v. 5.1.1; FALCON unzip v. 1.0.2;\n scaff10X v. git 4.28.2018; Bionano Solve\n DLS v. 3.2.1; Salsa2 HiC v. 2.0;\n smrtanalysis Arrow polishing & gap\n filling v. 5.1.0.26412; longranger align\n v. 2.2.2; freebayes v. 1.2.0;\n purge_haplotigs v. bit 7.10.2018; gEVAL\n manual curation v. 2019-11-08\nAssembly Name :: bStrHab1.2.pri\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 76.1x\nSequencing Technology :: PacBio RSII; 10X Genomics linked reads;\n Bionano Genomics DLS; Arima Genomics HiC\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Strigops habroptila Annotation\n Release 101\nAnnotation Version :: 101\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.3\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 5645757
topology: linear
so has quality: SO_0000987
location: 1..5645757
location: region:1-5645757:1
RO_0002162: 2489341

NC_044296
type: RefSeq
SIO_000068: refseq

PRJNA558775
type: BioProject
SIO_000068: bioproject

SAMN09948751
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5645757:1
position: 5645757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5645757:1:source
so part of: sequence
organism: Strigops habroptila
mol type: genomic DNA
isolate: Jane
chromosome: 20
sex: female
tissue type: blood in lysis buffer or EtOH
country: New Zealand: Anchor Island
lat lon: 45.757406 S 166.504927 E
collection date: 2013-04-13
collected by: Tim Raemaekers, Daryl Eason, Andrew Digby of Department of Conservation, New Zealand

2489341
type: Taxonomy
SIO_000068: taxonomy

LOC115618304
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: LOC115618304
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(33466..152359)
location: region:33466-152359:-1
so has part: feature:33466-152359:-1:exon
subclass of: SO_0000010

115618304
type: Gene
SIO_000068: ncbigene

position:33466:-1
position: 33466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:152359:-1
position: 152359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33466-152359:-1:exon

LOC115618304
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: LOC115618304
product: olfactory receptor 14A16-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins, and 41% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030509742.1
SIO_010081: LOC115618304
subclass of: SO_0000673
so part of: LOC115618304
location: complement(join(33466..33629,151238..152359))
location: region:33466-152359:-1
so has part: feature:151238-152359:-1:exon
so has part: feature:33466-33629:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:151238-152359:-1:exon

position:151238:-1
position: 151238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:33466-33629:-1:exon

position:33629:-1
position: 33629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC115618304
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: LOC115618304
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: olfactory receptor 14A16-like
translation: MTVPCAQRQQMSNGSSITHFLLLPFADTRELQLWHFWLFLGIFLAALLGNGLIITSTACDQHVHTPMYFFLLNLSLLDLGCISTTVPKSMANSLWNTRDISYLGCAAQVFLFVFFISAEISLLTIMAYDRYVAICKPLHYGTLLGSRACAHMAAAAWGSGFLNALLHTANTFSLPLCRGNAVEQFFCEIPQILKLSCSHSYLRKVGLLVVTNFLVCGCFVFIVGSYVQIFRAVLRIPSVRGRHKAFSTCLPHLAVVSLLVSTGIFAYLKPPSISSLSLDLVVSVLYSVVPPAVNPLIYSLRNQELRGAVRKLVTGCVSAAIHCLLSSSKGSQFVAQCWGNGYLIDIQTQYGIKDRTTTCSLEDFSRVKGRTAMGDIMVGISYRPPD
SIO_010081: LOC115618304
subclass of: SO_0000673
so part of: LOC115618304
location: complement(join(33466..33629,151238..152234))
location: region:33466-152234:-1
so has part: feature:151238-152234:-1:exon
so has part: feature:33466-33629:-1:exon

XP_030365602.1
type: Protein
SIO_000068: ncbiprotein

position:152234:-1
position: 152234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:151238-152234:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:33466-33629:-1:exon

LOC115618250
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: LOC115618250
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 174872..177487
location: region:174872-177487:1
so has part: feature:174872-177487:1:exon
subclass of: SO_0000010

115618250
type: Gene
SIO_000068: ncbigene

position:174872:1
position: 174872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:177487:1
position: 177487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:174872-177487:1:exon

LOC115618250
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 2489341
gene: LOC115618250
product: F-BAR domain only protein 1-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_003994767.1
SIO_010081: LOC115618250
so part of: LOC115618250
location: join(174872..175066,175150..175261,175545..175606,175730..175820,175889..176797,177268..177487)
location: region:174872-177487:1
so has part: feature:174872-175066:1:exon
so has part: feature:175150-175261:1:exon
so has part: feature:175545-175606:1:exon
so has part: feature:175730-175820:1:exon
so has part: feature:175889-176797:1:exon
so has part: feature:177268-177487:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:174872-175066:1:exon

position:175066:1
position: 175066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:175150-175261:1:exon

position:175150:1
position: 175150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:175261:1
position: 175261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:175545-175606:1:exon

position:175545:1
position: 175545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:175606:1
position: 175606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:175730-175820:1:exon

position:175730:1
position: 175730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:175820:1
position: 175820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:175889-176797:1:exon

position:175889:1
position: 175889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:176797:1
position: 176797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:177268-177487:1:exon

position:177268:1
position: 177268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115618250
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 2489341
gene: LOC115618250
product: F-BAR domain only protein 1-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_003994768.1
SIO_010081: LOC115618250
so part of: LOC115618250
location: join(174872..175066,175150..175261,175545..175606,175730..175820,175889..176731,177268..177487)
location: region:174872-177487:1
so has part: feature:174872-175066:1:exon
so has part: feature:175150-175261:1:exon
so has part: feature:175545-175606:1:exon
so has part: feature:175730-175820:1:exon
so has part: feature:175889-176731:1:exon
so has part: feature:177268-177487:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:174872-175066:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:175150-175261:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:175545-175606:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:175730-175820:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:175889-176731:1:exon

position:176731:1
position: 176731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:177268-177487:1:exon

LOC115618250
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: LOC115618250
product: F-BAR domain only protein 1-like, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509615.1
SIO_010081: LOC115618250
subclass of: SO_0000673
so part of: LOC115618250
location: join(174880..175066,175150..175261,175545..175606,175730..175820,176513..177487)
location: region:174880-177487:1
so has part: feature:174880-175066:1:exon
so has part: feature:175150-175261:1:exon
so has part: feature:175545-175606:1:exon
so has part: feature:175730-175820:1:exon
so has part: feature:176513-177487:1:exon

position:174880:1
position: 174880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:174880-175066:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:175150-175261:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:175545-175606:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:175730-175820:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:176513-177487:1:exon

position:176513:1
position: 176513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115618250
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 2489341
gene: LOC115618250
product: F-BAR domain only protein 1-like, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_003994769.1
SIO_010081: LOC115618250
so part of: LOC115618250
location: join(174880..175066,175150..175261,175545..175606,175730..175820,176513..176731,177268..177487)
location: region:174880-177487:1
so has part: feature:174880-175066:1:exon
so has part: feature:175150-175261:1:exon
so has part: feature:175545-175606:1:exon
so has part: feature:175730-175820:1:exon
so has part: feature:176513-176731:1:exon
so has part: feature:177268-177487:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:174880-175066:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:175150-175261:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:175545-175606:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:175730-175820:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:176513-176731:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:177268-177487:1:exon

LOC115618250
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: LOC115618250
product: F-BAR domain only protein 1-like, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030509614.1
SIO_010081: LOC115618250
subclass of: SO_0000673
so part of: LOC115618250
location: join(174927..175066,175545..175606,175730..175820,175889..177487)
location: region:174927-177487:1
so has part: feature:174927-175066:1:exon
so has part: feature:175545-175606:1:exon
so has part: feature:175730-175820:1:exon
so has part: feature:175889-177487:1:exon

position:174927:1
position: 174927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:174927-175066:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:175545-175606:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:175730-175820:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:175889-177487:1:exon

LOC115618250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: LOC115618250
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC115618250 isoform X3
translation: MRRARQRPPGPSARTHVRPLLSQTKSQDRKLLLGPFCTSARSRLCRARPVEDECLSPAPTAEEPRQKAGAGPLLHTHFQELEEGGRAAGFPAAQTSSGPGKTHRSQRPPVLSSASRWSRLLKRRNYRGLT
SIO_010081: LOC115618250
subclass of: SO_0000673
so part of: LOC115618250
location: join(174951..175066,175150..175261,175545..175606,175730..175820,176513..176524)
location: region:174951-176524:1
so has part: feature:174951-175066:1:exon
so has part: feature:175150-175261:1:exon
so has part: feature:175545-175606:1:exon
so has part: feature:175730-175820:1:exon
so has part: feature:176513-176524:1:exon

XP_030365475.1
type: Protein
SIO_000068: ncbiprotein

position:174951:1
position: 174951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:176524:1
position: 176524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:174951-175066:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:175150-175261:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:175545-175606:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:175730-175820:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:176513-176524:1:exon

LOC115618250
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: LOC115618250
product: F-BAR domain only protein 1-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030509613.1
SIO_010081: LOC115618250
subclass of: SO_0000673
so part of: LOC115618250
location: join(174984..175066,175150..175261,175545..175606,175730..175820,175889..177487)
location: region:174984-177487:1
so has part: feature:174984-175066:1:exon
so has part: feature:175150-175261:1:exon
so has part: feature:175545-175606:1:exon
so has part: feature:175730-175820:1:exon
so has part: feature:175889-177487:1:exon

position:174984:1
position: 174984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:174984-175066:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:175150-175261:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:175545-175606:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:175730-175820:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:175889-177487:1:exon

LOC115618250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: LOC115618250
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-BAR domain only protein 1-like isoform X2
translation: MSGLCSRRRRARTESCCWAPSAQALPRAGRRWKSCWLPGSTDEQWPWEDPPVAAPPGALFGLPVESAFEAEELPDSCTNVLTSSSSPLSSSSPENVEYSGLDFPSHPAPGSSPDFRPWTLQPGTLQSPLPKQRSPPKLPLPALPRPRSAAGRLLEPRSELSVRRLHRRRCRRAVGGRGAGAPGAAAAAQRPEKPPRPTPSGSRCRGSGPAAPAGNNPVHLGFFSPAPPSAGESSSPSPWTCQGLGSRLSEGSTPVASPEQPGE
SIO_010081: LOC115618250
subclass of: SO_0000673
so part of: LOC115618250
location: join(174997..175066,175545..175606,175730..175820,175889..176457)
location: region:174997-176457:1
so has part: feature:174997-175066:1:exon
so has part: feature:175545-175606:1:exon
so has part: feature:175730-175820:1:exon
so has part: feature:175889-176457:1:exon

XP_030365474.1
type: Protein
SIO_000068: ncbiprotein

position:174997:1
position: 174997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:176457:1
position: 176457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:174997-175066:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:175545-175606:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:175730-175820:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:175889-176457:1:exon

LOC115618250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: LOC115618250
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-BAR domain only protein 1-like isoform X1
translation: MSVPCSHSRRAKTESRCWASSAHALPRAGRRWKSCWLPGSTDEQWPWEDPPVAAPPGALFGLPVESAFEAEELPDSCTNVLTSSSSPLSSSSPENVEYSGLDFPSHPAPGSSPDFRPWTLQPGTLQSPLPKQRSPPKLPLPALPRPRSAAGRLLEPRSELSVRRLHRRRCRRAVGGRGAGAPGAAAAAQRPEKPPRPTPSGSRCRGSGPAAPAGNNPVHLGFFSPAPPSAGESSSPSPWTCQGLGSRLSEGSTPVASPEQPGE
SIO_010081: LOC115618250
subclass of: SO_0000673
so part of: LOC115618250
location: join(175192..175261,175545..175606,175730..175820,175889..176457)
location: region:175192-176457:1
so has part: feature:175192-175261:1:exon
so has part: feature:175545-175606:1:exon
so has part: feature:175730-175820:1:exon
so has part: feature:175889-176457:1:exon

XP_030365473.1
type: Protein
SIO_000068: ncbiprotein

position:175192:1
position: 175192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:175192-175261:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:175545-175606:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:175730-175820:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:175889-176457:1:exon

JAK3
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: JAK3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(178243..185954)
location: region:178243-185954:-1
so has part: feature:178243-185954:-1:exon
subclass of: SO_0000010

115618249
type: Gene
SIO_000068: ncbigene

position:178243:-1
position: 178243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:185954:-1
position: 185954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:178243-185954:-1:exon

JAK3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: JAK3
product: Janus kinase 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 long SRA reads, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030509611.1
SIO_010081: JAK3
subclass of: SO_0000673
so part of: JAK3
location: complement(join(178243..178567,178653..178763,178835..178952,179026..179198,179311..179435,179523..179712,179933..180072,180146..180296,180783..180934,181001..181139,181742..181875,181950..182034,182115..182246,182336..182457,182851..183037,183140..183251,183424..183581,183664..183786,183860..184142,184306..184451,184860..184971,185073..185196,185309..185503,185824..185954))
location: region:178243-185954:-1
so has part: feature:185824-185954:-1:exon
so has part: feature:185309-185503:-1:exon
so has part: feature:185073-185196:-1:exon
so has part: feature:184860-184971:-1:exon
so has part: feature:184306-184451:-1:exon
so has part: feature:183860-184142:-1:exon
so has part: feature:183664-183786:-1:exon
so has part: feature:183424-183581:-1:exon
so has part: feature:183140-183251:-1:exon
so has part: feature:182851-183037:-1:exon
so has part: feature:182336-182457:-1:exon
so has part: feature:182115-182246:-1:exon
so has part: feature:181950-182034:-1:exon
so has part: feature:181742-181875:-1:exon
so has part: feature:181001-181139:-1:exon
so has part: feature:180783-180934:-1:exon
so has part: feature:180146-180296:-1:exon
so has part: feature:179933-180072:-1:exon
so has part: feature:179523-179712:-1:exon
so has part: feature:179311-179435:-1:exon
so has part: feature:179026-179198:-1:exon
so has part: feature:178835-178952:-1:exon
so has part: feature:178653-178763:-1:exon
so has part: feature:178243-178567:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:185824-185954:-1:exon

position:185824:-1
position: 185824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:185309-185503:-1:exon

position:185309:-1
position: 185309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:185503:-1
position: 185503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:185073-185196:-1:exon

position:185073:-1
position: 185073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:185196:-1
position: 185196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:184860-184971:-1:exon

position:184860:-1
position: 184860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:184971:-1
position: 184971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:184306-184451:-1:exon

position:184306:-1
position: 184306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:184451:-1
position: 184451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:183860-184142:-1:exon

position:183860:-1
position: 183860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:184142:-1
position: 184142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:183664-183786:-1:exon

position:183664:-1
position: 183664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:183786:-1
position: 183786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:183424-183581:-1:exon

position:183424:-1
position: 183424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:183581:-1
position: 183581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:183140-183251:-1:exon

position:183140:-1
position: 183140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:183251:-1
position: 183251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:182851-183037:-1:exon

position:182851:-1
position: 182851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:183037:-1
position: 183037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:182336-182457:-1:exon

position:182336:-1
position: 182336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:182457:-1
position: 182457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:182115-182246:-1:exon

position:182115:-1
position: 182115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:182246:-1
position: 182246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:181950-182034:-1:exon

position:181950:-1
position: 181950
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:182034:-1
position: 182034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:181742-181875:-1:exon

position:181742:-1
position: 181742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:181875:-1
position: 181875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:181001-181139:-1:exon

position:181001:-1
position: 181001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:181139:-1
position: 181139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:180783-180934:-1:exon

position:180783:-1
position: 180783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:180934:-1
position: 180934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:180146-180296:-1:exon

position:180146:-1
position: 180146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:180296:-1
position: 180296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:179933-180072:-1:exon

position:179933:-1
position: 179933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:180072:-1
position: 180072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:179523-179712:-1:exon

position:179523:-1
position: 179523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:179712:-1
position: 179712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:179311-179435:-1:exon

position:179311:-1
position: 179311
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:179435:-1
position: 179435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:179026-179198:-1:exon

position:179026:-1
position: 179026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:179198:-1
position: 179198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:178835-178952:-1:exon

position:178835:-1
position: 178835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:178952:-1
position: 178952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:178653-178763:-1:exon

position:178653:-1
position: 178653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:178763:-1
position: 178763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:178243-178567:-1:exon

position:178567:-1
position: 178567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

JAK3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: JAK3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tyrosine-protein kinase JAK3
translation: MAPLGEETPLIGERSCSLSSTETGTLQVYLYHRVPPGAAGILTFTFGEYTAEELCVCAAKACGVLPVCHSLFALATEDLSCWFPPNHLFTIDESCSQVVVYRIRFFFPSWCGLGQSHRFQLLNDRTSPVLDYPVIDYLFAQSRSDFISGRMAVALSLPRQEECLGLAVLDMLRIAKEKHQSPDEVFSHISYKSCIPAPLRCQIQQHSFLTRKRIRHRFSKSLQKLGSCQPDGRCLKLKYLLDLERLQRRWAEESFRVRAPSSSTDITIHVAGESGVSWSCGSSETRQHFCDFPDIADISIKQASGDGGAVENRVVTLTKTDNRVLEMEFPSLRDARSFVALIDGYYRLTTDAHHFFCKEVAPPRLLEDLENQCHGPISSEFAVNKLKGAGSRPGLFLLRRSPQDFDSLLLTVCTETRSGRDYKRCLIRRDKDGSWGLLGVPRRFCSLRELLGTYRRCGLQAEGAPMRLAACCPPQPRDKSNLLIVRSGCPQPPGSPCTPRRSLNQMMFHKIDPQSLTRGESLGQGSFTHIYKGIKQDQGEDGCYQTTVVLKVMDGSHQNCSESFLEAASIMSQLSHKHLVLLHGVSLGKDSIMVQEYVRYGPLDLYLKKNQGEAKVTTSWKLQVAKQLAYALNYLEDKKITHGNISAKKVLLTREGDVASGSPPFIKLNDPGVSVTILAKDMLVERIPWLAPECLQDPKSLALPADKWSFGATLWEIFSGGNMPVSLLEPQKKLDFYASGLQLPAPKWTELATLIVQCMDYEPWRRPCFRALIRDLNSLITSDYELLSDLSPADVALRDSFWGCEPLAMCQDPACFEERHLKYISLLGKGNFGSVELCRYDPLGDSTGELVAVKKLQQDSAKELRDFEREIQILHSLQHDFIVQYRGVCYSRGCRRLRLVMEYLPNGCLRDYLQKNQPRLAHRTLLLYAWQICKGMEYLGAQRCVHRDLASRNILVESETHVKIGDFGLAKLLPQDKDYYVVREPGQSPVFWYAPESLSDNVFSRASDIWSFGVLLYELFTYSNKIRSPSEEFLRMMGTEKTTQIICHLLELLKDNRRLPAPCGCPGEVYTLMLSCWAFNPGARPTFGELVPKIEALRDGRSKACG
SIO_010081: JAK3
subclass of: SO_0000673
so part of: JAK3
location: complement(join(178451..178567,178653..178763,178835..178952,179026..179198,179311..179435,179523..179712,179933..180072,180146..180296,180783..180934,181001..181139,181742..181875,181950..182034,182115..182246,182336..182457,182851..183037,183140..183251,183424..183581,183664..183786,183860..184142,184306..184451,184860..184971,185073..185196,185309..185495))
location: region:178451-185495:-1
so has part: feature:185309-185495:-1:exon
so has part: feature:185073-185196:-1:exon
so has part: feature:184860-184971:-1:exon
so has part: feature:184306-184451:-1:exon
so has part: feature:183860-184142:-1:exon
so has part: feature:183664-183786:-1:exon
so has part: feature:183424-183581:-1:exon
so has part: feature:183140-183251:-1:exon
so has part: feature:182851-183037:-1:exon
so has part: feature:182336-182457:-1:exon
so has part: feature:182115-182246:-1:exon
so has part: feature:181950-182034:-1:exon
so has part: feature:181742-181875:-1:exon
so has part: feature:181001-181139:-1:exon
so has part: feature:180783-180934:-1:exon
so has part: feature:180146-180296:-1:exon
so has part: feature:179933-180072:-1:exon
so has part: feature:179523-179712:-1:exon
so has part: feature:179311-179435:-1:exon
so has part: feature:179026-179198:-1:exon
so has part: feature:178835-178952:-1:exon
so has part: feature:178653-178763:-1:exon
so has part: feature:178451-178567:-1:exon

XP_030365471.1
type: Protein
SIO_000068: ncbiprotein

position:178451:-1
position: 178451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:185495:-1
position: 185495
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:185309-185495:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:185073-185196:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:184860-184971:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:184306-184451:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:183860-184142:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:183664-183786:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:183424-183581:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:183140-183251:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:182851-183037:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:182336-182457:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:182115-182246:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:181950-182034:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:181742-181875:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:181001-181139:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:180783-180934:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:180146-180296:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:179933-180072:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:179523-179712:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:179311-179435:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:179026-179198:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:178835-178952:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:178653-178763:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:178451-178567:-1:exon

SLC5A5
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: SLC5A5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 187356..192307
location: region:187356-192307:1
so has part: feature:187356-192307:1:exon
subclass of: SO_0000010

115618147
type: Gene
SIO_000068: ncbigene

position:187356:1
position: 187356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:192307:1
position: 192307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:187356-192307:1:exon

SLC5A5
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 2489341
gene: SLC5A5
product: solute carrier family 5 member 5, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 19 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_003994744.1
SIO_010081: SLC5A5
so part of: SLC5A5
location: join(187356..187367,187569..188135,188220..188285,188553..188604,188702..188769,188842..188996,189076..189216,189719..189848,189955..190043,190142..190254,190576..190646,191190..191276,191366..191572,191814..191917,192020..192307)
location: region:187356-192307:1
so has part: feature:187356-187367:1:exon
so has part: feature:187569-188135:1:exon
so has part: feature:188220-188285:1:exon
so has part: feature:188553-188604:1:exon
so has part: feature:188702-188769:1:exon
so has part: feature:188842-188996:1:exon
so has part: feature:189076-189216:1:exon
so has part: feature:189719-189848:1:exon
so has part: feature:189955-190043:1:exon
so has part: feature:190142-190254:1:exon
so has part: feature:190576-190646:1:exon
so has part: feature:191190-191276:1:exon
so has part: feature:191366-191572:1:exon
so has part: feature:191814-191917:1:exon
so has part: feature:192020-192307:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:187356-187367:1:exon

position:187367:1
position: 187367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:187569-188135:1:exon

position:187569:1
position: 187569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:188135:1
position: 188135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:188220-188285:1:exon

position:188220:1
position: 188220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:188285:1
position: 188285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:188553-188604:1:exon

position:188553:1
position: 188553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:188604:1
position: 188604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:188702-188769:1:exon

position:188702:1
position: 188702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:188769:1
position: 188769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:188842-188996:1:exon

position:188842:1
position: 188842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:188996:1
position: 188996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:189076-189216:1:exon

position:189076:1
position: 189076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:189216:1
position: 189216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:189719-189848:1:exon

position:189719:1
position: 189719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:189848:1
position: 189848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:189955-190043:1:exon

position:189955:1
position: 189955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:190043:1
position: 190043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:190142-190254:1:exon

position:190142:1
position: 190142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:190254:1
position: 190254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:190576-190646:1:exon

position:190576:1
position: 190576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:190646:1
position: 190646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:191190-191276:1:exon

position:191190:1
position: 191190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:191276:1
position: 191276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:191366-191572:1:exon

position:191366:1
position: 191366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:191572:1
position: 191572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:191814-191917:1:exon

position:191814:1
position: 191814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:191917:1
position: 191917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:192020-192307:1:exon

position:192020:1
position: 192020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SLC5A5
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 2489341
gene: SLC5A5
product: solute carrier family 5 member 5, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 19 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_003994743.1
SIO_010081: SLC5A5
so part of: SLC5A5
location: join(187531..188135,188220..188285,188553..188604,188702..188769,188842..188996,189076..189216,189719..189848,189955..190043,190142..190254,190576..190646,191190..191276,191366..191572,191814..191917,192020..192307)
location: region:187531-192307:1
so has part: feature:187531-188135:1:exon
so has part: feature:188220-188285:1:exon
so has part: feature:188553-188604:1:exon
so has part: feature:188702-188769:1:exon
so has part: feature:188842-188996:1:exon
so has part: feature:189076-189216:1:exon
so has part: feature:189719-189848:1:exon
so has part: feature:189955-190043:1:exon
so has part: feature:190142-190254:1:exon
so has part: feature:190576-190646:1:exon
so has part: feature:191190-191276:1:exon
so has part: feature:191366-191572:1:exon
so has part: feature:191814-191917:1:exon
so has part: feature:192020-192307:1:exon

position:187531:1
position: 187531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:187531-188135:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:188220-188285:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:188553-188604:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:188702-188769:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:188842-188996:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:189076-189216:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:189719-189848:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:189955-190043:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:190142-190254:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:190576-190646:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:191190-191276:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:191366-191572:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:191814-191917:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:192020-192307:1:exon

SLC5A5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: SLC5A5
product: solute carrier family 5 member 5, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030509404.1
SIO_010081: SLC5A5
subclass of: SO_0000673
so part of: SLC5A5
location: join(187531..188135,188220..188285,188553..188604,188702..188769,188842..188996,189076..189216,189719..189848,189955..190043,190142..190254,190576..190646,191190..191276,191366..191550,191793..191917,192020..192268)
location: region:187531-192268:1
so has part: feature:187531-188135:1:exon
so has part: feature:188220-188285:1:exon
so has part: feature:188553-188604:1:exon
so has part: feature:188702-188769:1:exon
so has part: feature:188842-188996:1:exon
so has part: feature:189076-189216:1:exon
so has part: feature:189719-189848:1:exon
so has part: feature:189955-190043:1:exon
so has part: feature:190142-190254:1:exon
so has part: feature:190576-190646:1:exon
so has part: feature:191190-191276:1:exon
so has part: feature:191366-191550:1:exon
so has part: feature:191793-191917:1:exon
so has part: feature:192020-192268:1:exon

position:192268:1
position: 192268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:187531-188135:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:188220-188285:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:188553-188604:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:188702-188769:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:188842-188996:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:189076-189216:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:189719-189848:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:189955-190043:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:190142-190254:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:190576-190646:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:191190-191276:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:191366-191550:1:exon

position:191550:1
position: 191550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:191793-191917:1:exon

position:191793:1
position: 191793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:192020-192268:1:exon

SLC5A5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: SLC5A5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sodium/iodide cotransporter
translation: MHQCRSGLSYLCVLCPCAVSLCPVPVLCPCAVYLSRVCRVPVLCPCAVSLAGVSPPAAATLAPAESLEQWVPERLTFSLWDYGVFALMLLVSTGIGLFHGLARGGQKTSEDFFTGGRRMSALPVGLSLSASFMSAIQVLGVPAEAHRYGAKFLWMCVGQLLNTLLTTKLFLPVFYRLGLTSTYEYLERRFSRSVRLCGTLQYVMATMLYTGIVIYAPALILNQVTGLDIWASLLSTGVICTFYTTIGGMKAVIWTDVFQVFVMLSGFLAIIIRGVLLVGGPTMVLAIAANGSRVNLADFNPDPRSRYTVWTFLVGGTLVWLSMYGVNQAQVQRYVACRTEREARMALLVNQVGLFCIVSSAVACGLVMFALYKDCDPLLAGYISAPDQYMPYLVLDIFKTSPGVPGLFLACAYSGTLSTASTSINAMAAVTVEDLIKPRLPALAPQRLTLISKGLSLIYGTSCITVAALASLLGGGVLQGSFTVMGVISGPLLGAFILGMFLPMCSTAGVLGGLAIGLALSLWVAAGGTLYPPSAATMGVLPASGALCSLYNRTTGANRTVLLGPLPPPRPLPPPRSPAIVGDFYAISYLYYGALGTLTTVVAGLLLSSVPGLSKRTRLPPGVLWWDIMKQTSLVAPTGDKTPGEEPLGKAEAPQVLPEGDGSTPRPGPSTATDLLLQETHV
SIO_010081: SLC5A5
subclass of: SO_0000673
so part of: SLC5A5
location: join(187584..188135,188220..188285,188553..188604,188702..188769,188842..188996,189076..189216,189719..189848,189955..190043,190142..190254,190576..190646,191190..191276,191366..191550,191793..191917,192020..192234)
location: region:187584-192234:1
so has part: feature:187584-188135:1:exon
so has part: feature:188220-188285:1:exon
so has part: feature:188553-188604:1:exon
so has part: feature:188702-188769:1:exon
so has part: feature:188842-188996:1:exon
so has part: feature:189076-189216:1:exon
so has part: feature:189719-189848:1:exon
so has part: feature:189955-190043:1:exon
so has part: feature:190142-190254:1:exon
so has part: feature:190576-190646:1:exon
so has part: feature:191190-191276:1:exon
so has part: feature:191366-191550:1:exon
so has part: feature:191793-191917:1:exon
so has part: feature:192020-192234:1:exon

XP_030365264.1
type: Protein
SIO_000068: ncbiprotein

position:187584:1
position: 187584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:192234:1
position: 192234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:187584-188135:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:188220-188285:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:188553-188604:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:188702-188769:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:188842-188996:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:189076-189216:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:189719-189848:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:189955-190043:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:190142-190254:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:190576-190646:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:191190-191276:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:191366-191550:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:191793-191917:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:192020-192234:1:exon

CCDC124
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: CCDC124
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 193114..202559
location: region:193114-202559:1
so has part: feature:193114-202559:1:exon
subclass of: SO_0000010

115618227
type: Gene
SIO_000068: ncbigene

position:193114:1
position: 193114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:202559:1
position: 202559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:193114-202559:1:exon

CCDC124
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: CCDC124
product: coiled-coil domain containing 124, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 234 long SRA reads, 6 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_030509579.1
SIO_010081: CCDC124
subclass of: SO_0000673
so part of: CCDC124
location: join(193114..193194,194054..194225,199923..200109,200440..200554,200871..202559)
location: region:193114-202559:1
so has part: feature:193114-193194:1:exon
so has part: feature:194054-194225:1:exon
so has part: feature:199923-200109:1:exon
so has part: feature:200440-200554:1:exon
so has part: feature:200871-202559:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:193114-193194:1:exon

position:193194:1
position: 193194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:194054-194225:1:exon

position:194054:1
position: 194054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:194225:1
position: 194225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:199923-200109:1:exon

position:199923:1
position: 199923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:200109:1
position: 200109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:200440-200554:1:exon

position:200440:1
position: 200440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:200554:1
position: 200554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:200871-202559:1:exon

position:200871:1
position: 200871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CCDC124
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: CCDC124
product: coiled-coil domain containing 124, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 202 long SRA reads, 6 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509581.1
SIO_010081: CCDC124
subclass of: SO_0000673
so part of: CCDC124
location: join(193389..193935,194054..194225,199923..200109,200440..200554,200871..202559)
location: region:193389-202559:1
so has part: feature:193389-193935:1:exon
so has part: feature:194054-194225:1:exon
so has part: feature:199923-200109:1:exon
so has part: feature:200440-200554:1:exon
so has part: feature:200871-202559:1:exon

position:193389:1
position: 193389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:193389-193935:1:exon

position:193935:1
position: 193935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:194054-194225:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:199923-200109:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:200440-200554:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:200871-202559:1:exon

CCDC124
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: CCDC124
product: coiled-coil domain containing 124, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 200 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509580.1
SIO_010081: CCDC124
subclass of: SO_0000673
so part of: CCDC124
location: join(193512..193948,194054..194225,199923..200109,200440..200554,200871..202559)
location: region:193512-202559:1
so has part: feature:193512-193948:1:exon
so has part: feature:194054-194225:1:exon
so has part: feature:199923-200109:1:exon
so has part: feature:200440-200554:1:exon
so has part: feature:200871-202559:1:exon

position:193512:1
position: 193512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:193512-193948:1:exon

position:193948:1
position: 193948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:194054-194225:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:199923-200109:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:200440-200554:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:200871-202559:1:exon

CCDC124
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: CCDC124
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coiled-coil domain-containing protein 124
translation: MPKKFQGENTKSAAARARKAEAKAAADAKRQQELEDAYWKDEDKHVMRKEQRKEEREKRRLEQLERKKELQRLLEEEDSKLKGKSPKQVTPGKVTRAQIEETIRKDQQQKENAETVEKEKTHLEVPLEENINRRVLEEGSVEARTIEDAIAVLSVANDLDRHPERRMKAAFTAFEELNLPRLKQENPNMRLSQLKQLLKKEWMKSPENPMNQRHKAYNSQK
SIO_010081: CCDC124
subclass of: SO_0000673
so part of: CCDC124
location: join(194067..194225,199923..200109,200440..200554,200871..201075)
location: region:194067-201075:1
so has part: feature:194067-194225:1:exon
so has part: feature:199923-200109:1:exon
so has part: feature:200440-200554:1:exon
so has part: feature:200871-201075:1:exon

XP_030365439.1
type: Protein
SIO_000068: ncbiprotein

position:194067:1
position: 194067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:201075:1
position: 201075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:194067-194225:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:199923-200109:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:200440-200554:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:200871-201075:1:exon

CCDC124
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: CCDC124
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coiled-coil domain-containing protein 124
translation: MPKKFQGENTKSAAARARKAEAKAAADAKRQQELEDAYWKDEDKHVMRKEQRKEEREKRRLEQLERKKELQRLLEEEDSKLKGKSPKQVTPGKVTRAQIEETIRKDQQQKENAETVEKEKTHLEVPLEENINRRVLEEGSVEARTIEDAIAVLSVANDLDRHPERRMKAAFTAFEELNLPRLKQENPNMRLSQLKQLLKKEWMKSPENPMNQRHKAYNSQK
SIO_010081: CCDC124
subclass of: SO_0000673
so part of: CCDC124
location: join(194067..194225,199923..200109,200440..200554,200871..201075)
location: region:194067-201075:1
so has part: feature:194067-194225:1:exon
so has part: feature:199923-200109:1:exon
so has part: feature:200440-200554:1:exon
so has part: feature:200871-201075:1:exon

XP_030365440.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:194067-194225:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:199923-200109:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:200440-200554:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:200871-201075:1:exon

CCDC124
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: CCDC124
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coiled-coil domain-containing protein 124
translation: MPKKFQGENTKSAAARARKAEAKAAADAKRQQELEDAYWKDEDKHVMRKEQRKEEREKRRLEQLERKKELQRLLEEEDSKLKGKSPKQVTPGKVTRAQIEETIRKDQQQKENAETVEKEKTHLEVPLEENINRRVLEEGSVEARTIEDAIAVLSVANDLDRHPERRMKAAFTAFEELNLPRLKQENPNMRLSQLKQLLKKEWMKSPENPMNQRHKAYNSQK
SIO_010081: CCDC124
subclass of: SO_0000673
so part of: CCDC124
location: join(194067..194225,199923..200109,200440..200554,200871..201075)
location: region:194067-201075:1
so has part: feature:194067-194225:1:exon
so has part: feature:199923-200109:1:exon
so has part: feature:200440-200554:1:exon
so has part: feature:200871-201075:1:exon

XP_030365441.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:194067-194225:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:199923-200109:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:200440-200554:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:200871-201075:1:exon

KCNN1
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: KCNN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 204366..215629
location: region:204366-215629:1
so has part: feature:204366-215629:1:exon
subclass of: SO_0000010

115618124
type: Gene
SIO_000068: ncbigene

position:204366:1
position: 204366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:215629:1
position: 215629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:204366-215629:1:exon

KCNN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: KCNN1
product: potassium calcium-activated channel subfamily N member 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 long SRA reads, 16 Proteins, and 85% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509344.2
SIO_010081: KCNN1
subclass of: SO_0000673
so part of: KCNN1
location: join(204366..204589,209237..209352,210261..210696,210771..210866,210961..211379,213098..213239,213323..213433,213514..213641,214047..214055,214278..214347,214437..215629)
location: region:204366-215629:1
so has part: feature:204366-204589:1:exon
so has part: feature:209237-209352:1:exon
so has part: feature:210261-210696:1:exon
so has part: feature:210771-210866:1:exon
so has part: feature:210961-211379:1:exon
so has part: feature:213098-213239:1:exon
so has part: feature:213323-213433:1:exon
so has part: feature:213514-213641:1:exon
so has part: feature:214047-214055:1:exon
so has part: feature:214278-214347:1:exon
so has part: feature:214437-215629:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:204366-204589:1:exon

position:204589:1
position: 204589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:209237-209352:1:exon

position:209237:1
position: 209237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:209352:1
position: 209352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:210261-210696:1:exon

position:210261:1
position: 210261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:210696:1
position: 210696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:210771-210866:1:exon

position:210771:1
position: 210771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:210866:1
position: 210866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:210961-211379:1:exon

position:210961:1
position: 210961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:211379:1
position: 211379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:213098-213239:1:exon

position:213098:1
position: 213098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:213239:1
position: 213239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:213323-213433:1:exon

position:213323:1
position: 213323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:213433:1
position: 213433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:213514-213641:1:exon

position:213514:1
position: 213514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:213641:1
position: 213641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:214047-214055:1:exon

position:214047:1
position: 214047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:214055:1
position: 214055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:214278-214347:1:exon

position:214278:1
position: 214278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:214347:1
position: 214347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:214437-215629:1:exon

position:214437:1
position: 214437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

KCNN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: KCNN1
product: potassium calcium-activated channel subfamily N member 1, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 long SRA reads, 37 Proteins, and 85% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509349.2
SIO_010081: KCNN1
subclass of: SO_0000673
so part of: KCNN1
location: join(204366..204589,209237..209352,210261..210696,210771..210866,210961..211379,213098..213239,213323..213433,213514..213641,214278..214347,214437..215629)
location: region:204366-215629:1
so has part: feature:204366-204589:1:exon
so has part: feature:209237-209352:1:exon
so has part: feature:210261-210696:1:exon
so has part: feature:210771-210866:1:exon
so has part: feature:210961-211379:1:exon
so has part: feature:213098-213239:1:exon
so has part: feature:213323-213433:1:exon
so has part: feature:213514-213641:1:exon
so has part: feature:214278-214347:1:exon
so has part: feature:214437-215629:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:204366-204589:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:209237-209352:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:210261-210696:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:210771-210866:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:210961-211379:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:213098-213239:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:213323-213433:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:213514-213641:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:214278-214347:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:214437-215629:1:exon

KCNN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: KCNN1
product: potassium calcium-activated channel subfamily N member 1, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 5 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509350.2
SIO_010081: KCNN1
subclass of: SO_0000673
so part of: KCNN1
location: join(204366..204589,209237..209352,210261..210696,210771..210866,210961..211379,213098..213239,213323..213433,213514..213616,214047..214055,214278..214347)
location: region:204366-214347:1
so has part: feature:204366-204589:1:exon
so has part: feature:209237-209352:1:exon
so has part: feature:210261-210696:1:exon
so has part: feature:210771-210866:1:exon
so has part: feature:210961-211379:1:exon
so has part: feature:213098-213239:1:exon
so has part: feature:213323-213433:1:exon
so has part: feature:213514-213616:1:exon
so has part: feature:214047-214055:1:exon
so has part: feature:214278-214347:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:204366-204589:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:209237-209352:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:210261-210696:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:210771-210866:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:210961-211379:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:213098-213239:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:213323-213433:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:213514-213616:1:exon

position:213616:1
position: 213616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:214047-214055:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:214278-214347:1:exon

KCNN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: KCNN1
product: potassium calcium-activated channel subfamily N member 1, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 5 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509351.2
SIO_010081: KCNN1
subclass of: SO_0000673
so part of: KCNN1
location: join(204366..204589,209237..209352,210261..210696,210771..210866,210961..211379,213098..213239,213323..213433,213514..213616,214278..214347)
location: region:204366-214347:1
so has part: feature:204366-204589:1:exon
so has part: feature:209237-209352:1:exon
so has part: feature:210261-210696:1:exon
so has part: feature:210771-210866:1:exon
so has part: feature:210961-211379:1:exon
so has part: feature:213098-213239:1:exon
so has part: feature:213323-213433:1:exon
so has part: feature:213514-213616:1:exon
so has part: feature:214278-214347:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:204366-204589:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:209237-209352:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:210261-210696:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:210771-210866:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:210961-211379:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:213098-213239:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:213323-213433:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:213514-213616:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:214278-214347:1:exon

KCNN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: KCNN1
product: potassium calcium-activated channel subfamily N member 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 long SRA reads, 16 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509345.1
SIO_010081: KCNN1
subclass of: SO_0000673
so part of: KCNN1
location: join(205230..205337,209237..209352,210261..210696,210771..210866,210961..211379,213098..213239,213323..213433,213514..213641,214047..214055,214278..214347,214437..215629)
location: region:205230-215629:1
so has part: feature:205230-205337:1:exon
so has part: feature:209237-209352:1:exon
so has part: feature:210261-210696:1:exon
so has part: feature:210771-210866:1:exon
so has part: feature:210961-211379:1:exon
so has part: feature:213098-213239:1:exon
so has part: feature:213323-213433:1:exon
so has part: feature:213514-213641:1:exon
so has part: feature:214047-214055:1:exon
so has part: feature:214278-214347:1:exon
so has part: feature:214437-215629:1:exon

position:205230:1
position: 205230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:205230-205337:1:exon

position:205337:1
position: 205337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:209237-209352:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:210261-210696:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:210771-210866:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:210961-211379:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:213098-213239:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:213323-213433:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:213514-213641:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:214047-214055:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:214278-214347:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:214437-215629:1:exon

KCNN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: KCNN1
product: potassium calcium-activated channel subfamily N member 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 long SRA reads, 16 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509346.1
SIO_010081: KCNN1
subclass of: SO_0000673
so part of: KCNN1
location: join(206218..206314,209237..209352,210261..210696,210771..210866,210961..211379,213098..213239,213323..213433,213514..213641,214047..214055,214278..214347,214437..215629)
location: region:206218-215629:1
so has part: feature:206218-206314:1:exon
so has part: feature:209237-209352:1:exon
so has part: feature:210261-210696:1:exon
so has part: feature:210771-210866:1:exon
so has part: feature:210961-211379:1:exon
so has part: feature:213098-213239:1:exon
so has part: feature:213323-213433:1:exon
so has part: feature:213514-213641:1:exon
so has part: feature:214047-214055:1:exon
so has part: feature:214278-214347:1:exon
so has part: feature:214437-215629:1:exon

position:206218:1
position: 206218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:206218-206314:1:exon

position:206314:1
position: 206314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:209237-209352:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:210261-210696:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:210771-210866:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:210961-211379:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:213098-213239:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:213323-213433:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:213514-213641:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:214047-214055:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:214278-214347:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:214437-215629:1:exon

KCNN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: KCNN1
product: potassium calcium-activated channel subfamily N member 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 long SRA reads, 16 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509347.1
SIO_010081: KCNN1
subclass of: SO_0000673
so part of: KCNN1
location: join(207570..207650,209237..209352,210261..210696,210771..210866,210961..211379,213098..213239,213323..213433,213514..213641,214047..214055,214278..214347,214437..215629)
location: region:207570-215629:1
so has part: feature:207570-207650:1:exon
so has part: feature:209237-209352:1:exon
so has part: feature:210261-210696:1:exon
so has part: feature:210771-210866:1:exon
so has part: feature:210961-211379:1:exon
so has part: feature:213098-213239:1:exon
so has part: feature:213323-213433:1:exon
so has part: feature:213514-213641:1:exon
so has part: feature:214047-214055:1:exon
so has part: feature:214278-214347:1:exon
so has part: feature:214437-215629:1:exon

position:207570:1
position: 207570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:207570-207650:1:exon

position:207650:1
position: 207650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:209237-209352:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:210261-210696:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:210771-210866:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:210961-211379:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:213098-213239:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:213323-213433:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:213514-213641:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:214047-214055:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:214278-214347:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:214437-215629:1:exon

KCNN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: KCNN1
product: potassium calcium-activated channel subfamily N member 1, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 long SRA reads, 16 Proteins, and 85% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509348.1
SIO_010081: KCNN1
subclass of: SO_0000673
so part of: KCNN1
location: join(209897..209936,210261..210696,210771..210866,210961..211379,213098..213239,213323..213433,213514..213641,214047..214055,214278..214347,214437..215629)
location: region:209897-215629:1
so has part: feature:209897-209936:1:exon
so has part: feature:210261-210696:1:exon
so has part: feature:210771-210866:1:exon
so has part: feature:210961-211379:1:exon
so has part: feature:213098-213239:1:exon
so has part: feature:213323-213433:1:exon
so has part: feature:213514-213641:1:exon
so has part: feature:214047-214055:1:exon
so has part: feature:214278-214347:1:exon
so has part: feature:214437-215629:1:exon

position:209897:1
position: 209897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:209897-209936:1:exon

position:209936:1
position: 209936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:210261-210696:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:210771-210866:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:210961-211379:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:213098-213239:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:213323-213433:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:213514-213641:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:214047-214055:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:214278-214347:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:214437-215629:1:exon

KCNN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: KCNN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: small conductance calcium-activated potassium channel protein 1 isoform X1
translation: MRDRPVPPPARAMSSCRYNGGVARPRGPLSTSTRTLHPLETETQPLRPRHSPGLEVVVSQPEQPGGPDPDLAAAPGQDAAEDRGRGPRRNQNIGYKLGHRRALFEKRKRLSDYALIFGMFGIVVMVTETELSWGVYTKESSYSFALKCLISLSTIILLGLIVMYHAREIQLFMVDNGADDWRIAMTYERIFFIALELIVCAIHPIPGQYLFTWTARLAFTYAASVADADVDIILSIPMFLRLYLIGRVMLLHSKLFTDASSRSIGALNKINFNTRFVMKTLMTICPGTVLLVFSISSWIIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTKLVKKIDHAKVRKHQRKFLQAIHQAQKLRSVKMEQRKLNDQANTLVDLAKTQNIMYDMVSELQERHEDLEKRLGALESKLEALGLSLRALPALVSQALGQQQRELLGSWTPRLRPATAPCTPTRAPRAPSTAPPTSSDSG
SIO_010081: KCNN1
subclass of: SO_0000673
so part of: KCNN1
location: join(210283..210696,210771..210866,210961..211379,213098..213239,213323..213433,213514..213641,214047..214055,214278..214347,214437..214709)
location: region:210283-214709:1
so has part: feature:210283-210696:1:exon
so has part: feature:210771-210866:1:exon
so has part: feature:210961-211379:1:exon
so has part: feature:213098-213239:1:exon
so has part: feature:213323-213433:1:exon
so has part: feature:213514-213641:1:exon
so has part: feature:214047-214055:1:exon
so has part: feature:214278-214347:1:exon
so has part: feature:214437-214709:1:exon

XP_030365204.1
type: Protein
SIO_000068: ncbiprotein

position:210283:1
position: 210283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:214709:1
position: 214709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:210283-210696:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:210771-210866:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:210961-211379:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:213098-213239:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:213323-213433:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:213514-213641:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:214047-214055:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:214278-214347:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:214437-214709:1:exon

KCNN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: KCNN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: small conductance calcium-activated potassium channel protein 1 isoform X1
translation: MRDRPVPPPARAMSSCRYNGGVARPRGPLSTSTRTLHPLETETQPLRPRHSPGLEVVVSQPEQPGGPDPDLAAAPGQDAAEDRGRGPRRNQNIGYKLGHRRALFEKRKRLSDYALIFGMFGIVVMVTETELSWGVYTKESSYSFALKCLISLSTIILLGLIVMYHAREIQLFMVDNGADDWRIAMTYERIFFIALELIVCAIHPIPGQYLFTWTARLAFTYAASVADADVDIILSIPMFLRLYLIGRVMLLHSKLFTDASSRSIGALNKINFNTRFVMKTLMTICPGTVLLVFSISSWIIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTKLVKKIDHAKVRKHQRKFLQAIHQAQKLRSVKMEQRKLNDQANTLVDLAKTQNIMYDMVSELQERHEDLEKRLGALESKLEALGLSLRALPALVSQALGQQQRELLGSWTPRLRPATAPCTPTRAPRAPSTAPPTSSDSG
SIO_010081: KCNN1
subclass of: SO_0000673
so part of: KCNN1
location: join(210283..210696,210771..210866,210961..211379,213098..213239,213323..213433,213514..213641,214047..214055,214278..214347,214437..214709)
location: region:210283-214709:1
so has part: feature:210283-210696:1:exon
so has part: feature:210771-210866:1:exon
so has part: feature:210961-211379:1:exon
so has part: feature:213098-213239:1:exon
so has part: feature:213323-213433:1:exon
so has part: feature:213514-213641:1:exon
so has part: feature:214047-214055:1:exon
so has part: feature:214278-214347:1:exon
so has part: feature:214437-214709:1:exon

XP_030365205.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:210283-210696:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:210771-210866:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:210961-211379:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:213098-213239:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:213323-213433:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:213514-213641:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:214047-214055:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:214278-214347:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:214437-214709:1:exon

KCNN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: KCNN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: small conductance calcium-activated potassium channel protein 1 isoform X1
translation: MRDRPVPPPARAMSSCRYNGGVARPRGPLSTSTRTLHPLETETQPLRPRHSPGLEVVVSQPEQPGGPDPDLAAAPGQDAAEDRGRGPRRNQNIGYKLGHRRALFEKRKRLSDYALIFGMFGIVVMVTETELSWGVYTKESSYSFALKCLISLSTIILLGLIVMYHAREIQLFMVDNGADDWRIAMTYERIFFIALELIVCAIHPIPGQYLFTWTARLAFTYAASVADADVDIILSIPMFLRLYLIGRVMLLHSKLFTDASSRSIGALNKINFNTRFVMKTLMTICPGTVLLVFSISSWIIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTKLVKKIDHAKVRKHQRKFLQAIHQAQKLRSVKMEQRKLNDQANTLVDLAKTQNIMYDMVSELQERHEDLEKRLGALESKLEALGLSLRALPALVSQALGQQQRELLGSWTPRLRPATAPCTPTRAPRAPSTAPPTSSDSG
SIO_010081: KCNN1
subclass of: SO_0000673
so part of: KCNN1
location: join(210283..210696,210771..210866,210961..211379,213098..213239,213323..213433,213514..213641,214047..214055,214278..214347,214437..214709)
location: region:210283-214709:1
so has part: feature:210283-210696:1:exon
so has part: feature:210771-210866:1:exon
so has part: feature:210961-211379:1:exon
so has part: feature:213098-213239:1:exon
so has part: feature:213323-213433:1:exon
so has part: feature:213514-213641:1:exon
so has part: feature:214047-214055:1:exon
so has part: feature:214278-214347:1:exon
so has part: feature:214437-214709:1:exon

XP_030365206.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:210283-210696:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:210771-210866:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:210961-211379:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:213098-213239:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:213323-213433:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:213514-213641:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:214047-214055:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:214278-214347:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:214437-214709:1:exon

KCNN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: KCNN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: small conductance calcium-activated potassium channel protein 1 isoform X1
translation: MRDRPVPPPARAMSSCRYNGGVARPRGPLSTSTRTLHPLETETQPLRPRHSPGLEVVVSQPEQPGGPDPDLAAAPGQDAAEDRGRGPRRNQNIGYKLGHRRALFEKRKRLSDYALIFGMFGIVVMVTETELSWGVYTKESSYSFALKCLISLSTIILLGLIVMYHAREIQLFMVDNGADDWRIAMTYERIFFIALELIVCAIHPIPGQYLFTWTARLAFTYAASVADADVDIILSIPMFLRLYLIGRVMLLHSKLFTDASSRSIGALNKINFNTRFVMKTLMTICPGTVLLVFSISSWIIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTKLVKKIDHAKVRKHQRKFLQAIHQAQKLRSVKMEQRKLNDQANTLVDLAKTQNIMYDMVSELQERHEDLEKRLGALESKLEALGLSLRALPALVSQALGQQQRELLGSWTPRLRPATAPCTPTRAPRAPSTAPPTSSDSG
SIO_010081: KCNN1
subclass of: SO_0000673
so part of: KCNN1
location: join(210283..210696,210771..210866,210961..211379,213098..213239,213323..213433,213514..213641,214047..214055,214278..214347,214437..214709)
location: region:210283-214709:1
so has part: feature:210283-210696:1:exon
so has part: feature:210771-210866:1:exon
so has part: feature:210961-211379:1:exon
so has part: feature:213098-213239:1:exon
so has part: feature:213323-213433:1:exon
so has part: feature:213514-213641:1:exon
so has part: feature:214047-214055:1:exon
so has part: feature:214278-214347:1:exon
so has part: feature:214437-214709:1:exon

XP_030365207.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:210283-210696:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:210771-210866:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:210961-211379:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:213098-213239:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:213323-213433:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:213514-213641:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:214047-214055:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:214278-214347:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:214437-214709:1:exon

KCNN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: KCNN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: small conductance calcium-activated potassium channel protein 1 isoform X1
translation: MRDRPVPPPARAMSSCRYNGGVARPRGPLSTSTRTLHPLETETQPLRPRHSPGLEVVVSQPEQPGGPDPDLAAAPGQDAAEDRGRGPRRNQNIGYKLGHRRALFEKRKRLSDYALIFGMFGIVVMVTETELSWGVYTKESSYSFALKCLISLSTIILLGLIVMYHAREIQLFMVDNGADDWRIAMTYERIFFIALELIVCAIHPIPGQYLFTWTARLAFTYAASVADADVDIILSIPMFLRLYLIGRVMLLHSKLFTDASSRSIGALNKINFNTRFVMKTLMTICPGTVLLVFSISSWIIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTKLVKKIDHAKVRKHQRKFLQAIHQAQKLRSVKMEQRKLNDQANTLVDLAKTQNIMYDMVSELQERHEDLEKRLGALESKLEALGLSLRALPALVSQALGQQQRELLGSWTPRLRPATAPCTPTRAPRAPSTAPPTSSDSG
SIO_010081: KCNN1
subclass of: SO_0000673
so part of: KCNN1
location: join(210283..210696,210771..210866,210961..211379,213098..213239,213323..213433,213514..213641,214047..214055,214278..214347,214437..214709)
location: region:210283-214709:1
so has part: feature:210283-210696:1:exon
so has part: feature:210771-210866:1:exon
so has part: feature:210961-211379:1:exon
so has part: feature:213098-213239:1:exon
so has part: feature:213323-213433:1:exon
so has part: feature:213514-213641:1:exon
so has part: feature:214047-214055:1:exon
so has part: feature:214278-214347:1:exon
so has part: feature:214437-214709:1:exon

XP_030365208.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:210283-210696:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:210771-210866:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:210961-211379:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:213098-213239:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:213323-213433:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:213514-213641:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:214047-214055:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:214278-214347:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:214437-214709:1:exon

KCNN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: KCNN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: small conductance calcium-activated potassium channel protein 1 isoform X2
translation: MRDRPVPPPARAMSSCRYNGGVARPRGPLSTSTRTLHPLETETQPLRPRHSPGLEVVVSQPEQPGGPDPDLAAAPGQDAAEDRGRGPRRNQNIGYKLGHRRALFEKRKRLSDYALIFGMFGIVVMVTETELSWGVYTKESSYSFALKCLISLSTIILLGLIVMYHAREIQLFMVDNGADDWRIAMTYERIFFIALELIVCAIHPIPGQYLFTWTARLAFTYAASVADADVDIILSIPMFLRLYLIGRVMLLHSKLFTDASSRSIGALNKINFNTRFVMKTLMTICPGTVLLVFSISSWIIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTKLVKKIDHAKVRKHQRKFLQAIHQLRSVKMEQRKLNDQANTLVDLAKTQNIMYDMVSELQERHEDLEKRLGALESKLEALGLSLRALPALVSQALGQQQRELLGSWTPRLRPATAPCTPTRAPRAPSTAPPTSSDSG
SIO_010081: KCNN1
subclass of: SO_0000673
so part of: KCNN1
location: join(210283..210696,210771..210866,210961..211379,213098..213239,213323..213433,213514..213641,214278..214347,214437..214709)
location: region:210283-214709:1
so has part: feature:210283-210696:1:exon
so has part: feature:210771-210866:1:exon
so has part: feature:210961-211379:1:exon
so has part: feature:213098-213239:1:exon
so has part: feature:213323-213433:1:exon
so has part: feature:213514-213641:1:exon
so has part: feature:214278-214347:1:exon
so has part: feature:214437-214709:1:exon

XP_030365209.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:210283-210696:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:210771-210866:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:210961-211379:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:213098-213239:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:213323-213433:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:213514-213641:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:214278-214347:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:214437-214709:1:exon

KCNN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: KCNN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: small conductance calcium-activated potassium channel protein 1 isoform X3
translation: MRDRPVPPPARAMSSCRYNGGVARPRGPLSTSTRTLHPLETETQPLRPRHSPGLEVVVSQPEQPGGPDPDLAAAPGQDAAEDRGRGPRRNQNIGYKLGHRRALFEKRKRLSDYALIFGMFGIVVMVTETELSWGVYTKESSYSFALKCLISLSTIILLGLIVMYHAREIQLFMVDNGADDWRIAMTYERIFFIALELIVCAIHPIPGQYLFTWTARLAFTYAASVADADVDIILSIPMFLRLYLIGRVMLLHSKLFTDASSRSIGALNKINFNTRFVMKTLMTICPGTVLLVFSISSWIIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTKLVKKIDHAKVRKHQQLRS
SIO_010081: KCNN1
subclass of: SO_0000673
so part of: KCNN1
location: join(210283..210696,210771..210866,210961..211379,213098..213239,213323..213433,213514..213616,214047..214055,214278..214282)
location: region:210283-214282:1
so has part: feature:210283-210696:1:exon
so has part: feature:210771-210866:1:exon
so has part: feature:210961-211379:1:exon
so has part: feature:213098-213239:1:exon
so has part: feature:213323-213433:1:exon
so has part: feature:213514-213616:1:exon
so has part: feature:214047-214055:1:exon
so has part: feature:214278-214282:1:exon

XP_030365210.1
type: Protein
SIO_000068: ncbiprotein

position:214282:1
position: 214282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:210283-210696:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:210771-210866:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:210961-211379:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:213098-213239:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:213323-213433:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:213514-213616:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:214047-214055:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:214278-214282:1:exon

KCNN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: KCNN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: small conductance calcium-activated potassium channel protein 1 isoform X4
translation: MRDRPVPPPARAMSSCRYNGGVARPRGPLSTSTRTLHPLETETQPLRPRHSPGLEVVVSQPEQPGGPDPDLAAAPGQDAAEDRGRGPRRNQNIGYKLGHRRALFEKRKRLSDYALIFGMFGIVVMVTETELSWGVYTKESSYSFALKCLISLSTIILLGLIVMYHAREIQLFMVDNGADDWRIAMTYERIFFIALELIVCAIHPIPGQYLFTWTARLAFTYAASVADADVDIILSIPMFLRLYLIGRVMLLHSKLFTDASSRSIGALNKINFNTRFVMKTLMTICPGTVLLVFSISSWIIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTKLVKKIDHAKVRKHQR
SIO_010081: KCNN1
subclass of: SO_0000673
so part of: KCNN1
location: join(210283..210696,210771..210866,210961..211379,213098..213239,213323..213433,213514..213616,214278..214282)
location: region:210283-214282:1
so has part: feature:210283-210696:1:exon
so has part: feature:210771-210866:1:exon
so has part: feature:210961-211379:1:exon
so has part: feature:213098-213239:1:exon
so has part: feature:213323-213433:1:exon
so has part: feature:213514-213616:1:exon
so has part: feature:214278-214282:1:exon

XP_030365211.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:210283-210696:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:210771-210866:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:210961-211379:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:213098-213239:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:213323-213433:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:213514-213616:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:214278-214282:1:exon

OCEL1
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: OCEL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 216563..218383
location: region:216563-218383:1
so has part: feature:216563-218383:1:exon
subclass of: SO_0000010

115618128
type: Gene
SIO_000068: ncbigene

position:216563:1
position: 216563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:218383:1
position: 218383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:216563-218383:1:exon

OCEL1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: OCEL1
product: occludin/ELL domain containing 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030509354.1
SIO_010081: OCEL1
subclass of: SO_0000673
so part of: OCEL1
location: join(216563..216638,216805..217238,217325..217480,217702..217807,217959..218383)
location: region:216563-218383:1
so has part: feature:216563-216638:1:exon
so has part: feature:216805-217238:1:exon
so has part: feature:217325-217480:1:exon
so has part: feature:217702-217807:1:exon
so has part: feature:217959-218383:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:216563-216638:1:exon

position:216638:1
position: 216638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:216805-217238:1:exon

position:216805:1
position: 216805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:217238:1
position: 217238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:217325-217480:1:exon

position:217325:1
position: 217325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:217480:1
position: 217480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:217702-217807:1:exon

position:217702:1
position: 217702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:217807:1
position: 217807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:217959-218383:1:exon

position:217959:1
position: 217959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

OCEL1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: OCEL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: occludin/ELL domain-containing protein 1
translation: MHPGYPQHPKSTGSRWPRSQWQWQTPALSTSEGCTMAPSSPARPGPRSSSSFSRRCSARPAASCRSRWGSTGVSLGVPPPPGAGTAPGDPLLRPPARRPCSLPLLPGVLKSPAARARHVTFEDEVVASGKPTGSIPSAKGREKPGASSVPPGLAPRPHALPDYVVRYPAIRSSQQREGYKGVFQDQLWEYTELLREIHSTLRRELEAGSTSTAPAARPAPSGRAPGAPECVFAPQDGSRMAHVLHEYMRKKKDWAFLAKQQRCEYLKQKLTHIKARIQEYDRDCAGTF
SIO_010081: OCEL1
subclass of: SO_0000673
so part of: OCEL1
location: join(216579..216638,216805..217238,217325..217480,217702..217807,217959..218069)
location: region:216579-218069:1
so has part: feature:216579-216638:1:exon
so has part: feature:216805-217238:1:exon
so has part: feature:217325-217480:1:exon
so has part: feature:217702-217807:1:exon
so has part: feature:217959-218069:1:exon

XP_030365214.1
type: Protein
SIO_000068: ncbiprotein

position:216579:1
position: 216579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:218069:1
position: 218069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:216579-216638:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:216805-217238:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:217325-217480:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:217702-217807:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:217959-218069:1:exon

OCLN
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: OCLN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 218670..226297
location: region:218670-226297:1
so has part: feature:218670-226297:1:exon
subclass of: SO_0000010

115618125
type: Gene
SIO_000068: ncbigene

position:218670:1
position: 218670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:226297:1
position: 226297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:218670-226297:1:exon

OCLN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: OCLN
product: occludin
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 105 long SRA reads, 9 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509352.1
SIO_010081: OCLN
subclass of: SO_0000673
so part of: OCLN
location: join(218670..218758,219700..219744,220111..220822,221768..221926,224182..224345,224494..224673,224750..224921,225327..225368,225704..226297)
location: region:218670-226297:1
so has part: feature:218670-218758:1:exon
so has part: feature:219700-219744:1:exon
so has part: feature:220111-220822:1:exon
so has part: feature:221768-221926:1:exon
so has part: feature:224182-224345:1:exon
so has part: feature:224494-224673:1:exon
so has part: feature:224750-224921:1:exon
so has part: feature:225327-225368:1:exon
so has part: feature:225704-226297:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:218670-218758:1:exon

position:218758:1
position: 218758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:219700-219744:1:exon

position:219700:1
position: 219700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:219744:1
position: 219744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:220111-220822:1:exon

position:220111:1
position: 220111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:220822:1
position: 220822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:221768-221926:1:exon

position:221768:1
position: 221768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:221926:1
position: 221926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:224182-224345:1:exon

position:224182:1
position: 224182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:224345:1
position: 224345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:224494-224673:1:exon

position:224494:1
position: 224494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:224673:1
position: 224673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:224750-224921:1:exon

position:224750:1
position: 224750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:224921:1
position: 224921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:225327-225368:1:exon

position:225327:1
position: 225327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:225368:1
position: 225368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:225704-226297:1:exon

position:225704:1
position: 225704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

OCLN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: OCLN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: occludin
translation: MKTYDSPTSGYGPPTGYGPSTGYGPPTGYGSPMGDYGDGTGARSPPPGSYYMEDVPQHFYKWSSPPGVVRILEAIIILLCVAIFACVASTLAWEYGYGGLYGSSLGFYGSSYYSSGLGYGYGSYYGGVTNPRTANGFMIAMAVLCFLAQLGLFVASITKSSSFRSRRFYLVVIVACAVLAFLMLIASIIYVVSVNPQAQMTSSYYYNPLLTMCNQIYSSGTYLNQYIYHYCTVDPQEAVAIVCGFLIVLLLCLICFFAHKTRSKIWKYGKQNVYWDKVPVVPEGPNVEEWVKNVADGTSVQDETATLAYSEKPMSPITAPPYNPPAYSYSPQDRLYAPGTYSTHGDQPDQGLSPSVPEEKPSRAPARRGRRGRRRHPDLEDSQYETDYTTAVESGDERDREQWESLYPPITSDSTRQRYKQEFDTDLKRYRQLRAEVDSVSDRINELSKQIDSISEDSPHYQDIAEEYNTLKDLQWSPDYQSKKLETRTLRNKLFHIKRMVRAYDKVRG
SIO_010081: OCLN
subclass of: SO_0000673
so part of: OCLN
location: join(220112..220822,221768..221926,224182..224345,224494..224673,224750..224921,225327..225368,225704..225805)
location: region:220112-225805:1
so has part: feature:220112-220822:1:exon
so has part: feature:221768-221926:1:exon
so has part: feature:224182-224345:1:exon
so has part: feature:224494-224673:1:exon
so has part: feature:224750-224921:1:exon
so has part: feature:225327-225368:1:exon
so has part: feature:225704-225805:1:exon

XP_030365212.1
type: Protein
SIO_000068: ncbiprotein

position:220112:1
position: 220112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:225805:1
position: 225805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:220112-220822:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:221768-221926:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:224182-224345:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:224494-224673:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:224750-224921:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:225327-225368:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:225704-225805:1:exon

NR2F6
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: NR2F6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(226624..234267)
location: region:226624-234267:-1
so has part: feature:226624-234267:-1:exon
subclass of: SO_0000010

115618127
type: Gene
SIO_000068: ncbigene

position:226624:-1
position: 226624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:234267:-1
position: 234267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:226624-234267:-1:exon

NR2F6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: NR2F6
product: nuclear receptor subfamily 2 group F member 6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 152 long SRA reads, 35 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_030509353.1
SIO_010081: NR2F6
subclass of: SO_0000673
so part of: NR2F6
location: complement(join(226624..228107,228708..229232,230302..230396,233425..234267))
location: region:226624-234267:-1
so has part: feature:233425-234267:-1:exon
so has part: feature:230302-230396:-1:exon
so has part: feature:228708-229232:-1:exon
so has part: feature:226624-228107:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:233425-234267:-1:exon

position:233425:-1
position: 233425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:230302-230396:-1:exon

position:230302:-1
position: 230302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:230396:-1
position: 230396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:228708-229232:-1:exon

position:228708:-1
position: 228708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:229232:-1
position: 229232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:226624-228107:-1:exon

position:228107:-1
position: 228107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NR2F6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: NR2F6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nuclear receptor subfamily 2 group F member 6
translation: MAMVAGGWGEPNGGGGGGEEAASPAGGGSDAEHGEEERAGAPVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYCRLKKCFRVGMRKEAVQRGRIPPSHSSTSPNTLPSGEYFNGQPVSELISQLLRAEPYPAARYGSQYAQQGSVMGIDNICELAARLLFSTVEWARNIPFFPELPVSDQVALLRLSWSELFVLNAAQSALPLHMAPLLAAAGFHASPMSADRVVSFMDQIRIFQDQVEKLNRLQVDSAEYSCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPAALISQLFFMRLVGKTPIETLIRDMLLSGSTFNWPYGTGQ
SIO_010081: NR2F6
subclass of: SO_0000673
so part of: NR2F6
location: complement(join(227833..228107,228708..229232,230302..230396,233425..233669))
location: region:227833-233669:-1
so has part: feature:233425-233669:-1:exon
so has part: feature:230302-230396:-1:exon
so has part: feature:228708-229232:-1:exon
so has part: feature:227833-228107:-1:exon

XP_030365213.1
type: Protein
SIO_000068: ncbiprotein

position:227833:-1
position: 227833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:233669:-1
position: 233669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:233425-233669:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:230302-230396:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:228708-229232:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:227833-228107:-1:exon

USHBP1
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: USHBP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(238858..244914)
location: region:238858-244914:-1
so has part: feature:238858-244914:-1:exon
subclass of: SO_0000010

115618305
type: Gene
SIO_000068: ncbigene

position:238858:-1
position: 238858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:244914:-1
position: 244914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:238858-244914:-1:exon

USHBP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: USHBP1
product: USH1 protein network component harmonin binding protein 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 long SRA reads, and 86% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030509744.1
SIO_010081: USHBP1
subclass of: SO_0000673
so part of: USHBP1
location: complement(join(238858..239116,239891..240013,240092..240183,240272..240454,240958..241195,241289..241424,241784..241866,241948..242088,242158..242264,242373..242474,242552..242764,242839..242978,243048..243148,243231..243406,243608..243846,244346..244422,244778..244914))
location: region:238858-244914:-1
so has part: feature:244778-244914:-1:exon
so has part: feature:244346-244422:-1:exon
so has part: feature:243608-243846:-1:exon
so has part: feature:243231-243406:-1:exon
so has part: feature:243048-243148:-1:exon
so has part: feature:242839-242978:-1:exon
so has part: feature:242552-242764:-1:exon
so has part: feature:242373-242474:-1:exon
so has part: feature:242158-242264:-1:exon
so has part: feature:241948-242088:-1:exon
so has part: feature:241784-241866:-1:exon
so has part: feature:241289-241424:-1:exon
so has part: feature:240958-241195:-1:exon
so has part: feature:240272-240454:-1:exon
so has part: feature:240092-240183:-1:exon
so has part: feature:239891-240013:-1:exon
so has part: feature:238858-239116:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:244778-244914:-1:exon

position:244778:-1
position: 244778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:244346-244422:-1:exon

position:244346:-1
position: 244346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:244422:-1
position: 244422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:243608-243846:-1:exon

position:243608:-1
position: 243608
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:243846:-1
position: 243846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:243231-243406:-1:exon

position:243231:-1
position: 243231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:243406:-1
position: 243406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:243048-243148:-1:exon

position:243048:-1
position: 243048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:243148:-1
position: 243148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:242839-242978:-1:exon

position:242839:-1
position: 242839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:242978:-1
position: 242978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:242552-242764:-1:exon

position:242552:-1
position: 242552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:242764:-1
position: 242764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:242373-242474:-1:exon

position:242373:-1
position: 242373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:242474:-1
position: 242474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:242158-242264:-1:exon

position:242158:-1
position: 242158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:242264:-1
position: 242264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:241948-242088:-1:exon

position:241948:-1
position: 241948
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:242088:-1
position: 242088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:241784-241866:-1:exon

position:241784:-1
position: 241784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:241866:-1
position: 241866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:241289-241424:-1:exon

position:241289:-1
position: 241289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:241424:-1
position: 241424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:240958-241195:-1:exon

position:240958:-1
position: 240958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:241195:-1
position: 241195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:240272-240454:-1:exon

position:240272:-1
position: 240272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:240454:-1
position: 240454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:240092-240183:-1:exon

position:240092:-1
position: 240092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:240183:-1
position: 240183
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:239891-240013:-1:exon

position:239891:-1
position: 239891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:240013:-1
position: 240013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:238858-239116:-1:exon

position:239116:-1
position: 239116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

USHBP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: USHBP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: Usher syndrome type-1C protein-binding protein 1
translation: MDPLSHAPPPPAAPLGARSPALGRTTPPGTNRKRIRAGAAGNCSSGCVLLPAPEIAMYPPASQIAMYPPHPEPPETAPAWARARGSATVKRRRLHRGCEEEEISAGTRTRKGPGQGPEAQPGRAGSPERGTGTSPGDGRCWRGQEAARMEKPPQPTEGEEEEEDEKDEDDENMAGDIEGVLRYEERIAGLLATVARLHRRAEQLQCCTSREDEDGWEGTTSLPAASPQQQRLGGTLGTAAGLGAHGPDLFADLQHVVSSLERTVFSRHRHRHQHAPVWPMPSEEWARAAKSLEELDRSPGWAGRAVGQALEEGAVEEAAVAAAASRNAALRAALGHRDEELCRATAALRALRGERDRLQHKVRDLRDALSRLEEPGGSGSDTAGLGSPPLHGEPQDLLQCGDDAQPHSPLSPQPSEGPSQEQEERVQQLQGSLARLQEVNRELAAALQDCKSNAERLSMVLGQHESRSTALRLALRCSERCGGAYAALLDLMWAKLHREEDGARGGAVGQQSPGHGGGSSPTPTEGPQLQCRAEPDGQEESGDSSSTTLQSTPALHGMEEGALREHIHRLRAEQAAVEASLQDTPAPSSTHHSEDARARAERVLWEARAQLPGWRRLEKAELLQELVMLKEAMADLKTRLQLVEREKRGLEVLVAAQGPREAALRLVLQHLQWEQDEGSGRPPSSSSSSEEDAQSGWVGAAAPQHPPDSARVGEELLHTLTRTEELRARARALVHALEQSSAISRAQQAQCVTVTADFFHAHSALALAYRGARRKQAAQLRRLEGQAGALRRQHARRAQALTRRLHSLEQGTAGSETCI
SIO_010081: USHBP1
subclass of: SO_0000673
so part of: USHBP1
location: complement(join(238945..239116,239891..240013,240092..240183,240272..240454,240958..241195,241289..241424,241784..241866,241948..242088,242158..242264,242373..242474,242552..242764,242839..242978,243048..243148,243231..243406,243608..243846,244346..244422,244778..244914))
location: region:238945-244914:-1
so has part: feature:244778-244914:-1:exon
so has part: feature:244346-244422:-1:exon
so has part: feature:243608-243846:-1:exon
so has part: feature:243231-243406:-1:exon
so has part: feature:243048-243148:-1:exon
so has part: feature:242839-242978:-1:exon
so has part: feature:242552-242764:-1:exon
so has part: feature:242373-242474:-1:exon
so has part: feature:242158-242264:-1:exon
so has part: feature:241948-242088:-1:exon
so has part: feature:241784-241866:-1:exon
so has part: feature:241289-241424:-1:exon
so has part: feature:240958-241195:-1:exon
so has part: feature:240272-240454:-1:exon
so has part: feature:240092-240183:-1:exon
so has part: feature:239891-240013:-1:exon
so has part: feature:238945-239116:-1:exon

XP_030365604.1
type: Protein
SIO_000068: ncbiprotein

position:238945:-1
position: 238945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:244778-244914:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:244346-244422:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:243608-243846:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:243231-243406:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:243048-243148:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:242839-242978:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:242552-242764:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:242373-242474:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:242158-242264:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:241948-242088:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:241784-241866:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:241289-241424:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:240958-241195:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:240272-240454:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:240092-240183:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:239891-240013:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:238945-239116:-1:exon

BABAM1
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: BABAM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 244772..247159
location: region:244772-247159:1
so has part: feature:244772-247159:1:exon
subclass of: SO_0000010

115618129
type: Gene
SIO_000068: ncbigene

position:244772:1
position: 244772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:247159:1
position: 247159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:244772-247159:1:exon

BABAM1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: BABAM1
product: BRISC and BRCA1 A complex member 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 240 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509355.1
SIO_010081: BABAM1
subclass of: SO_0000673
so part of: BABAM1
location: join(244772..244856,245037..245360,245453..245511,245592..245730,245801..245879,246287..246311,246509..246638,246734..246820,246892..247159)
location: region:244772-247159:1
so has part: feature:244772-244856:1:exon
so has part: feature:245037-245360:1:exon
so has part: feature:245453-245511:1:exon
so has part: feature:245592-245730:1:exon
so has part: feature:245801-245879:1:exon
so has part: feature:246287-246311:1:exon
so has part: feature:246509-246638:1:exon
so has part: feature:246734-246820:1:exon
so has part: feature:246892-247159:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:244772-244856:1:exon

position:244856:1
position: 244856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:245037-245360:1:exon

position:245037:1
position: 245037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:245360:1
position: 245360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:245453-245511:1:exon

position:245453:1
position: 245453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:245511:1
position: 245511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:245592-245730:1:exon

position:245592:1
position: 245592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:245730:1
position: 245730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:245801-245879:1:exon

position:245801:1
position: 245801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:245879:1
position: 245879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:246287-246311:1:exon

position:246287:1
position: 246287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:246311:1
position: 246311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:246509-246638:1:exon

position:246509:1
position: 246509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:246638:1
position: 246638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:246734-246820:1:exon

position:246734:1
position: 246734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:246820:1
position: 246820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:246892-247159:1:exon

position:246892:1
position: 246892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

BABAM1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: BABAM1
product: BRISC and BRCA1 A complex member 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 323 long SRA reads, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_030509357.1
SIO_010081: BABAM1
subclass of: SO_0000673
so part of: BABAM1
location: join(244772..244856,245037..245360,245453..245511,245610..245730,245801..245879,246287..246311,246509..246638,246734..246820,246892..247159)
location: region:244772-247159:1
so has part: feature:244772-244856:1:exon
so has part: feature:245037-245360:1:exon
so has part: feature:245453-245511:1:exon
so has part: feature:245610-245730:1:exon
so has part: feature:245801-245879:1:exon
so has part: feature:246287-246311:1:exon
so has part: feature:246509-246638:1:exon
so has part: feature:246734-246820:1:exon
so has part: feature:246892-247159:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:244772-244856:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:245037-245360:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:245453-245511:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:245610-245730:1:exon

position:245610:1
position: 245610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:245801-245879:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:246287-246311:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:246509-246638:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:246734-246820:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:246892-247159:1:exon

BABAM1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: BABAM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: BRISC and BRCA1-A complex member 1 isoform X1
translation: MERGCGMDTSEPGSAAEEEEEKAPEPRPRTRSNPEGAEDRALSAQTSVGNRSEGEGEAASADGSPQGTATAPHGTAWPGPAPHSEVQVKTPRVNCPEKVIICLDLAEEMALPKLESFNGSGPDVRSKTNALNISQKMIEMFVRTKHKIDKCHEFALVVVNNDATWLSGFTSDPREVCSCLYDLETVVCKSFNLEGLFNLIQQKIELPVTENVQTIPPPYVVRTILVFGRPGCQPQFSVSEHMKKMLQCPYFFFDVIYIHNGVEEKDDETSWKEMYSFFSSLDTKGTNYKYEVSLSGPAVELHNCMAKLLAHPLQRPFQTHAAYGLLEEDEPPEIEATV
SIO_010081: BABAM1
subclass of: SO_0000673
so part of: BABAM1
location: join(245064..245360,245453..245511,245592..245730,245801..245879,246287..246311,246509..246638,246734..246820,246892..247092)
location: region:245064-247092:1
so has part: feature:245064-245360:1:exon
so has part: feature:245453-245511:1:exon
so has part: feature:245592-245730:1:exon
so has part: feature:245801-245879:1:exon
so has part: feature:246287-246311:1:exon
so has part: feature:246509-246638:1:exon
so has part: feature:246734-246820:1:exon
so has part: feature:246892-247092:1:exon

XP_030365215.1
type: Protein
SIO_000068: ncbiprotein

position:245064:1
position: 245064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:247092:1
position: 247092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:245064-245360:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:245453-245511:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:245592-245730:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:245801-245879:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:246287-246311:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:246509-246638:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:246734-246820:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:246892-247092:1:exon

BABAM1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: BABAM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: BRISC and BRCA1-A complex member 1 isoform X2
translation: MERGCGMDTSEPGSAAEEEEEKAPEPRPRTRSNPEGAEDRALSAQTSVGNRSEGEGEAASADGSPQGTATAPHGTAWPGPAPHSEVQVKTPRVNCPEKVIICLDLAEEMALPKLESFNGSKTNALNISQKMIEMFVRTKHKIDKCHEFALVVVNNDATWLSGFTSDPREVCSCLYDLETVVCKSFNLEGLFNLIQQKIELPVTENVQTIPPPYVVRTILVFGRPGCQPQFSVSEHMKKMLQCPYFFFDVIYIHNGVEEKDDETSWKEMYSFFSSLDTKGTNYKYEVSLSGPAVELHNCMAKLLAHPLQRPFQTHAAYGLLEEDEPPEIEATV
SIO_010081: BABAM1
subclass of: SO_0000673
so part of: BABAM1
location: join(245064..245360,245453..245511,245610..245730,245801..245879,246287..246311,246509..246638,246734..246820,246892..247092)
location: region:245064-247092:1
so has part: feature:245064-245360:1:exon
so has part: feature:245453-245511:1:exon
so has part: feature:245610-245730:1:exon
so has part: feature:245801-245879:1:exon
so has part: feature:246287-246311:1:exon
so has part: feature:246509-246638:1:exon
so has part: feature:246734-246820:1:exon
so has part: feature:246892-247092:1:exon

XP_030365217.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:245064-245360:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:245453-245511:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:245610-245730:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:245801-245879:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:246287-246311:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:246509-246638:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:246734-246820:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:246892-247092:1:exon

ANKLE1
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: ANKLE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 247658..251759
location: region:247658-251759:1
so has part: feature:247658-251759:1:exon
subclass of: SO_0000010

115618130
type: Gene
SIO_000068: ncbigene

position:247658:1
position: 247658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:251759:1
position: 251759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:247658-251759:1:exon

ANKLE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: ANKLE1
product: ankyrin repeat and LEM domain containing 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 68 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509358.1
SIO_010081: ANKLE1
subclass of: SO_0000673
so part of: ANKLE1
location: join(247658..247763,248040..248145,248320..248416,248519..250280,250399..250561,250663..250822,250908..251041,251418..251759)
location: region:247658-251759:1
so has part: feature:247658-247763:1:exon
so has part: feature:248040-248145:1:exon
so has part: feature:248320-248416:1:exon
so has part: feature:248519-250280:1:exon
so has part: feature:250399-250561:1:exon
so has part: feature:250663-250822:1:exon
so has part: feature:250908-251041:1:exon
so has part: feature:251418-251759:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:247658-247763:1:exon

position:247763:1
position: 247763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:248040-248145:1:exon

position:248040:1
position: 248040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:248145:1
position: 248145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:248320-248416:1:exon

position:248320:1
position: 248320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:248416:1
position: 248416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:248519-250280:1:exon

position:248519:1
position: 248519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:250280:1
position: 250280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:250399-250561:1:exon

position:250399:1
position: 250399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:250561:1
position: 250561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:250663-250822:1:exon

position:250663:1
position: 250663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:250822:1
position: 250822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:250908-251041:1:exon

position:250908:1
position: 250908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:251041:1
position: 251041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:251418-251759:1:exon

position:251418:1
position: 251418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ANKLE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: ANKLE1
product: ankyrin repeat and LEM domain containing 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 67 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509360.1
SIO_010081: ANKLE1
subclass of: SO_0000673
so part of: ANKLE1
location: join(247658..247744,248040..248145,248320..248416,248519..250280,250399..250561,250663..250822,250908..251041,251418..251759)
location: region:247658-251759:1
so has part: feature:247658-247744:1:exon
so has part: feature:248040-248145:1:exon
so has part: feature:248320-248416:1:exon
so has part: feature:248519-250280:1:exon
so has part: feature:250399-250561:1:exon
so has part: feature:250663-250822:1:exon
so has part: feature:250908-251041:1:exon
so has part: feature:251418-251759:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:247658-247744:1:exon

position:247744:1
position: 247744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:248040-248145:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:248320-248416:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:248519-250280:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:250399-250561:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:250663-250822:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:250908-251041:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:251418-251759:1:exon

ANKLE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: ANKLE1
product: ankyrin repeat and LEM domain containing 1, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 long SRA reads, 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509363.2
SIO_010081: ANKLE1
subclass of: SO_0000673
so part of: ANKLE1
location: join(247659..247763,248040..248145,248320..248416,248519..250280,250399..250561,250663..250822,250908..251037,251418..251746)
location: region:247659-251746:1
so has part: feature:247659-247763:1:exon
so has part: feature:248040-248145:1:exon
so has part: feature:248320-248416:1:exon
so has part: feature:248519-250280:1:exon
so has part: feature:250399-250561:1:exon
so has part: feature:250663-250822:1:exon
so has part: feature:250908-251037:1:exon
so has part: feature:251418-251746:1:exon

position:247659:1
position: 247659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:251746:1
position: 251746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:247659-247763:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:248040-248145:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:248320-248416:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:248519-250280:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:250399-250561:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:250663-250822:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:250908-251037:1:exon

position:251037:1
position: 251037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:251418-251746:1:exon

ANKLE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: ANKLE1
product: ankyrin repeat and LEM domain containing 1, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 67 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030509362.1
SIO_010081: ANKLE1
subclass of: SO_0000673
so part of: ANKLE1
location: join(247820..247876,248320..248416,248519..250280,250399..250561,250663..250822,250908..251041,251418..251759)
location: region:247820-251759:1
so has part: feature:247820-247876:1:exon
so has part: feature:248320-248416:1:exon
so has part: feature:248519-250280:1:exon
so has part: feature:250399-250561:1:exon
so has part: feature:250663-250822:1:exon
so has part: feature:250908-251041:1:exon
so has part: feature:251418-251759:1:exon

position:247820:1
position: 247820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:247820-247876:1:exon

position:247876:1
position: 247876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:248320-248416:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:248519-250280:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:250399-250561:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:250663-250822:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:250908-251041:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:251418-251759:1:exon

ANKLE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: ANKLE1
product: ankyrin repeat and LEM domain containing 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 67 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509359.1
SIO_010081: ANKLE1
subclass of: SO_0000673
so part of: ANKLE1
location: join(247955..248145,248320..248416,248519..250280,250399..250561,250663..250822,250908..251041,251418..251759)
location: region:247955-251759:1
so has part: feature:247955-248145:1:exon
so has part: feature:248320-248416:1:exon
so has part: feature:248519-250280:1:exon
so has part: feature:250399-250561:1:exon
so has part: feature:250663-250822:1:exon
so has part: feature:250908-251041:1:exon
so has part: feature:251418-251759:1:exon

position:247955:1
position: 247955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:247955-248145:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:248320-248416:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:248519-250280:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:250399-250561:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:250663-250822:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:250908-251041:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:251418-251759:1:exon

ANKLE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: ANKLE1
product: ankyrin repeat and LEM domain containing 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 67 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509361.1
SIO_010081: ANKLE1
subclass of: SO_0000673
so part of: ANKLE1
location: join(248240..248416,248519..250280,250399..250561,250663..250822,250908..251041,251418..251759)
location: region:248240-251759:1
so has part: feature:248240-248416:1:exon
so has part: feature:248519-250280:1:exon
so has part: feature:250399-250561:1:exon
so has part: feature:250663-250822:1:exon
so has part: feature:250908-251041:1:exon
so has part: feature:251418-251759:1:exon

position:248240:1
position: 248240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:248240-248416:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:248519-250280:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:250399-250561:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:250663-250822:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:250908-251041:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:251418-251759:1:exon

ANKLE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: ANKLE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ankyrin repeat and LEM domain-containing protein 1 isoform X1
translation: MYHHVTPRTKSRLLASAERFGASSSSSLFDDTLEMPRRPPRVRAPRGVPRDPATTSGCCVTLQGTDVCSGDREETGSLGDTVLLPGAPSSSPGSSPTVLLVPGDHGHPQSPPLDAQGSPGSSPTVLLVPGDHKHPQSLPLDAQGSPGSSPTVLLVPGDHKHSQSSPLGAQGSLGSSPTVLLVPGDPQCLPSDAQGSPCTASRVLEGGSGCQDPLPFGTLQPLWLHRRFCRLLAPRPPGALAVPPSTQEHLEGEERGRALTERHSPGHGDTAPPRPLSDEGLRRRLRALGDEPGPVTALTRRLYLRRLEELLRTHRDRPEGHSPELAAALQSGLIPDCAQDELLLRQEFDRPDRSRHWREGLVKSSFNYLLLDPRTTQDLPLRSHRLSPAECFRTFVQAIFYVGKGSRARPYCHLAEALGRHRAGTQKGCPKVRRILEIWASGHGVVSVHCFQSTVPAEAYTREGCLVEALGGAADHHQPEEGAVLWHGGTLAGSAAPAPRRSPAAQGHEHLPGRGRAAAPASGHPGWALSTLGCCAGGYPIPAPPLLPCRRRWPRAGCGFCVVSTGASFSLSLQGDK
SIO_010081: ANKLE1
subclass of: SO_0000673
so part of: ANKLE1
location: join(249323..250280,250399..250561,250663..250822,250908..251041,251418..251736)
location: region:249323-251736:1
so has part: feature:249323-250280:1:exon
so has part: feature:250399-250561:1:exon
so has part: feature:250663-250822:1:exon
so has part: feature:250908-251041:1:exon
so has part: feature:251418-251736:1:exon

XP_030365218.1
type: Protein
SIO_000068: ncbiprotein

position:249323:1
position: 249323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:251736:1
position: 251736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:249323-250280:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:250399-250561:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:250663-250822:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:250908-251041:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:251418-251736:1:exon

ANKLE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: ANKLE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ankyrin repeat and LEM domain-containing protein 1 isoform X1
translation: MYHHVTPRTKSRLLASAERFGASSSSSLFDDTLEMPRRPPRVRAPRGVPRDPATTSGCCVTLQGTDVCSGDREETGSLGDTVLLPGAPSSSPGSSPTVLLVPGDHGHPQSPPLDAQGSPGSSPTVLLVPGDHKHPQSLPLDAQGSPGSSPTVLLVPGDHKHSQSSPLGAQGSLGSSPTVLLVPGDPQCLPSDAQGSPCTASRVLEGGSGCQDPLPFGTLQPLWLHRRFCRLLAPRPPGALAVPPSTQEHLEGEERGRALTERHSPGHGDTAPPRPLSDEGLRRRLRALGDEPGPVTALTRRLYLRRLEELLRTHRDRPEGHSPELAAALQSGLIPDCAQDELLLRQEFDRPDRSRHWREGLVKSSFNYLLLDPRTTQDLPLRSHRLSPAECFRTFVQAIFYVGKGSRARPYCHLAEALGRHRAGTQKGCPKVRRILEIWASGHGVVSVHCFQSTVPAEAYTREGCLVEALGGAADHHQPEEGAVLWHGGTLAGSAAPAPRRSPAAQGHEHLPGRGRAAAPASGHPGWALSTLGCCAGGYPIPAPPLLPCRRRWPRAGCGFCVVSTGASFSLSLQGDK
SIO_010081: ANKLE1
subclass of: SO_0000673
so part of: ANKLE1
location: join(249323..250280,250399..250561,250663..250822,250908..251041,251418..251736)
location: region:249323-251736:1
so has part: feature:249323-250280:1:exon
so has part: feature:250399-250561:1:exon
so has part: feature:250663-250822:1:exon
so has part: feature:250908-251041:1:exon
so has part: feature:251418-251736:1:exon

XP_030365219.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:249323-250280:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:250399-250561:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:250663-250822:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:250908-251041:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:251418-251736:1:exon

ANKLE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: ANKLE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ankyrin repeat and LEM domain-containing protein 1 isoform X1
translation: MYHHVTPRTKSRLLASAERFGASSSSSLFDDTLEMPRRPPRVRAPRGVPRDPATTSGCCVTLQGTDVCSGDREETGSLGDTVLLPGAPSSSPGSSPTVLLVPGDHGHPQSPPLDAQGSPGSSPTVLLVPGDHKHPQSLPLDAQGSPGSSPTVLLVPGDHKHSQSSPLGAQGSLGSSPTVLLVPGDPQCLPSDAQGSPCTASRVLEGGSGCQDPLPFGTLQPLWLHRRFCRLLAPRPPGALAVPPSTQEHLEGEERGRALTERHSPGHGDTAPPRPLSDEGLRRRLRALGDEPGPVTALTRRLYLRRLEELLRTHRDRPEGHSPELAAALQSGLIPDCAQDELLLRQEFDRPDRSRHWREGLVKSSFNYLLLDPRTTQDLPLRSHRLSPAECFRTFVQAIFYVGKGSRARPYCHLAEALGRHRAGTQKGCPKVRRILEIWASGHGVVSVHCFQSTVPAEAYTREGCLVEALGGAADHHQPEEGAVLWHGGTLAGSAAPAPRRSPAAQGHEHLPGRGRAAAPASGHPGWALSTLGCCAGGYPIPAPPLLPCRRRWPRAGCGFCVVSTGASFSLSLQGDK
SIO_010081: ANKLE1
subclass of: SO_0000673
so part of: ANKLE1
location: join(249323..250280,250399..250561,250663..250822,250908..251041,251418..251736)
location: region:249323-251736:1
so has part: feature:249323-250280:1:exon
so has part: feature:250399-250561:1:exon
so has part: feature:250663-250822:1:exon
so has part: feature:250908-251041:1:exon
so has part: feature:251418-251736:1:exon

XP_030365220.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:249323-250280:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:250399-250561:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:250663-250822:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:250908-251041:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:251418-251736:1:exon

ANKLE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: ANKLE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ankyrin repeat and LEM domain-containing protein 1 isoform X1
translation: MYHHVTPRTKSRLLASAERFGASSSSSLFDDTLEMPRRPPRVRAPRGVPRDPATTSGCCVTLQGTDVCSGDREETGSLGDTVLLPGAPSSSPGSSPTVLLVPGDHGHPQSPPLDAQGSPGSSPTVLLVPGDHKHPQSLPLDAQGSPGSSPTVLLVPGDHKHSQSSPLGAQGSLGSSPTVLLVPGDPQCLPSDAQGSPCTASRVLEGGSGCQDPLPFGTLQPLWLHRRFCRLLAPRPPGALAVPPSTQEHLEGEERGRALTERHSPGHGDTAPPRPLSDEGLRRRLRALGDEPGPVTALTRRLYLRRLEELLRTHRDRPEGHSPELAAALQSGLIPDCAQDELLLRQEFDRPDRSRHWREGLVKSSFNYLLLDPRTTQDLPLRSHRLSPAECFRTFVQAIFYVGKGSRARPYCHLAEALGRHRAGTQKGCPKVRRILEIWASGHGVVSVHCFQSTVPAEAYTREGCLVEALGGAADHHQPEEGAVLWHGGTLAGSAAPAPRRSPAAQGHEHLPGRGRAAAPASGHPGWALSTLGCCAGGYPIPAPPLLPCRRRWPRAGCGFCVVSTGASFSLSLQGDK
SIO_010081: ANKLE1
subclass of: SO_0000673
so part of: ANKLE1
location: join(249323..250280,250399..250561,250663..250822,250908..251041,251418..251736)
location: region:249323-251736:1
so has part: feature:249323-250280:1:exon
so has part: feature:250399-250561:1:exon
so has part: feature:250663-250822:1:exon
so has part: feature:250908-251041:1:exon
so has part: feature:251418-251736:1:exon

XP_030365221.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:249323-250280:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:250399-250561:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:250663-250822:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:250908-251041:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:251418-251736:1:exon

ANKLE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: ANKLE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ankyrin repeat and LEM domain-containing protein 1 isoform X1
translation: MYHHVTPRTKSRLLASAERFGASSSSSLFDDTLEMPRRPPRVRAPRGVPRDPATTSGCCVTLQGTDVCSGDREETGSLGDTVLLPGAPSSSPGSSPTVLLVPGDHGHPQSPPLDAQGSPGSSPTVLLVPGDHKHPQSLPLDAQGSPGSSPTVLLVPGDHKHSQSSPLGAQGSLGSSPTVLLVPGDPQCLPSDAQGSPCTASRVLEGGSGCQDPLPFGTLQPLWLHRRFCRLLAPRPPGALAVPPSTQEHLEGEERGRALTERHSPGHGDTAPPRPLSDEGLRRRLRALGDEPGPVTALTRRLYLRRLEELLRTHRDRPEGHSPELAAALQSGLIPDCAQDELLLRQEFDRPDRSRHWREGLVKSSFNYLLLDPRTTQDLPLRSHRLSPAECFRTFVQAIFYVGKGSRARPYCHLAEALGRHRAGTQKGCPKVRRILEIWASGHGVVSVHCFQSTVPAEAYTREGCLVEALGGAADHHQPEEGAVLWHGGTLAGSAAPAPRRSPAAQGHEHLPGRGRAAAPASGHPGWALSTLGCCAGGYPIPAPPLLPCRRRWPRAGCGFCVVSTGASFSLSLQGDK
SIO_010081: ANKLE1
subclass of: SO_0000673
so part of: ANKLE1
location: join(249323..250280,250399..250561,250663..250822,250908..251041,251418..251736)
location: region:249323-251736:1
so has part: feature:249323-250280:1:exon
so has part: feature:250399-250561:1:exon
so has part: feature:250663-250822:1:exon
so has part: feature:250908-251041:1:exon
so has part: feature:251418-251736:1:exon

XP_030365222.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:249323-250280:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:250399-250561:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:250663-250822:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:250908-251041:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:251418-251736:1:exon

ANKLE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: ANKLE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ankyrin repeat and LEM domain-containing protein 1 isoform X2
translation: MYHHVTPRTKSRLLASAERFGASSSSSLFDDTLEMPRRPPRVRAPRGVPRDPATTSGCCVTLQGTDVCSGDREETGSLGDTVLLPGAPSSSPGSSPTVLLVPGDHGHPQSPPLDAQGSPGSSPTVLLVPGDHKHPQSLPLDAQGSPGSSPTVLLVPGDHKHSQSSPLGAQGSLGSSPTVLLVPGDPQCLPSDAQGSPCTASRVLEGGSGCQDPLPFGTLQPLWLHRRFCRLLAPRPPGALAVPPSTQEHLEGEERGRALTERHSPGHGDTAPPRPLSDEGLRRRLRALGDEPGPVTALTRRLYLRRLEELLRTHRDRPEGHSPELAAALQSGLIPDCAQDELLLRQEFDRPDRSRHWREGLVKSSFNYLLLDPRTTQDLPLRSHRLSPAECFRTFVQAIFYVGKGSRARPYCHLAEALGRHRAGTQKGCPKVRRILEIWASGHGVVSVHCFQSTVPAEAYTREGCLVEALGLQTITNQRKGLCYGTVAHWPAARRRRLGVHLLHRAMSIFLAEGERQLRPVDIQGGR
SIO_010081: ANKLE1
subclass of: SO_0000673
so part of: ANKLE1
location: join(249323..250280,250399..250561,250663..250822,250908..251037,251418..251590)
location: region:249323-251590:1
so has part: feature:249323-250280:1:exon
so has part: feature:250399-250561:1:exon
so has part: feature:250663-250822:1:exon
so has part: feature:250908-251037:1:exon
so has part: feature:251418-251590:1:exon

XP_030365223.1
type: Protein
SIO_000068: ncbiprotein

position:251590:1
position: 251590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:249323-250280:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:250399-250561:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:250663-250822:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:250908-251037:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:251418-251590:1:exon

ABHD8
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: ABHD8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(251730..260414)
location: region:251730-260414:-1
so has part: feature:251730-260414:-1:exon
subclass of: SO_0000010

115618131
type: Gene
SIO_000068: ncbigene

position:251730:-1
position: 251730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:260414:-1
position: 260414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:251730-260414:-1:exon

ABHD8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: ABHD8
product: abhydrolase domain containing 8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 long SRA reads, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030509364.1
SIO_010081: ABHD8
subclass of: SO_0000673
so part of: ABHD8
location: complement(join(251730..253825,253911..254127,254228..254398,254986..255739,259969..260414))
location: region:251730-260414:-1
so has part: feature:259969-260414:-1:exon
so has part: feature:254986-255739:-1:exon
so has part: feature:254228-254398:-1:exon
so has part: feature:253911-254127:-1:exon
so has part: feature:251730-253825:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:259969-260414:-1:exon

position:259969:-1
position: 259969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:254986-255739:-1:exon

position:254986:-1
position: 254986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:255739:-1
position: 255739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:254228-254398:-1:exon

position:254228:-1
position: 254228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:254398:-1
position: 254398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:253911-254127:-1:exon

position:253911:-1
position: 253911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:254127:-1
position: 254127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:251730-253825:-1:exon

position:253825:-1
position: 253825
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ABHD8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: ABHD8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein ABHD8
translation: MLNSITDGLLCCLMGKTTNAVGPLDSVESSNGYSFMEVKPGRILRVRHSAPPRPAPEGAEEPQHPRGTVHCKRRITVYRNGQLVIENLGDAVRSEILHCHNGCGEPNSTVELELSDVAGQAPAQGPAGTPGCATREAAAAPGKRRKRKPKKVITIDCKKQITSCKGTHSDVVLFFIHGVGGSLDIWKEQLDFFAKLGYEVVAPDLAGHGCSSAPQIAAAYTFYALAEDMRAVFKRYAKKRNILIGHSYGVSFCTFLAHEYPDLVHKVIMINGGGPTALEPSLCSIFNMPTCVLHCLSPCLAWSFLKAGFARQGAKEKQLLKEGNAFNVSSFVLRAMMSGQYWPEGDEVYHAELAVPVLLVHGMHDKFVPVEEDQRMAEILLIAFLKVIDEGSHMVMMECPETVNTLLHEFVLWEPETPAGDGQGEKK
SIO_010081: ABHD8
subclass of: SO_0000673
so part of: ABHD8
location: complement(join(253676..253825,253911..254127,254228..254398,254986..255731))
location: region:253676-255731:-1
so has part: feature:254986-255731:-1:exon
so has part: feature:254228-254398:-1:exon
so has part: feature:253911-254127:-1:exon
so has part: feature:253676-253825:-1:exon

XP_030365224.1
type: Protein
SIO_000068: ncbiprotein

position:253676:-1
position: 253676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:255731:-1
position: 255731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254986-255731:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:254228-254398:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:253911-254127:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:253676-253825:-1:exon

MRPL34
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: MRPL34
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 261297..262158
location: region:261297-262158:1
so has part: feature:261297-262158:1:exon
subclass of: SO_0000010

115618132
type: Gene
SIO_000068: ncbigene

position:261297:1
position: 261297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:262158:1
position: 262158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:261297-262158:1:exon

MRPL34
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: MRPL34
product: mitochondrial ribosomal protein L34
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 464 long SRA reads, 4 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_030509365.1
SIO_010081: MRPL34
subclass of: SO_0000673
so part of: MRPL34
location: join(261297..261383,261602..262158)
location: region:261297-262158:1
so has part: feature:261297-261383:1:exon
so has part: feature:261602-262158:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:261297-261383:1:exon

position:261383:1
position: 261383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:261602-262158:1:exon

position:261602:1
position: 261602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MRPL34
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: MRPL34
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 39S ribosomal protein L34, mitochondrial
translation: MAALGCAVGRRFLLWQQAAARSSQLRTAAVLSSSLELPLRSHVPLKPVGISPGPVSCWTHQQIRTKARGNEYQPNNRKRKRTHGWIKRISTPAGIEVILRRMLKGRKSLTH
SIO_010081: MRPL34
subclass of: SO_0000673
so part of: MRPL34
location: join(261352..261383,261602..261905)
location: region:261352-261905:1
so has part: feature:261352-261383:1:exon
so has part: feature:261602-261905:1:exon

XP_030365225.1
type: Protein
SIO_000068: ncbiprotein

position:261352:1
position: 261352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:261905:1
position: 261905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:261352-261383:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:261602-261905:1:exon

DDA1
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: DDA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 262526..270971
location: region:262526-270971:1
so has part: feature:262526-270971:1:exon
subclass of: SO_0000010

115618198
type: Gene
SIO_000068: ncbigene

position:262526:1
position: 262526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:270971:1
position: 270971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:262526-270971:1:exon

DDA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: DDA1
product: DET1 and DDB1 associated 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 82 long SRA reads, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_030509523.1
SIO_010081: DDA1
subclass of: SO_0000673
so part of: DDA1
location: join(262526..262580,266322..266402,266850..266901,267242..267303,268250..270971)
location: region:262526-270971:1
so has part: feature:262526-262580:1:exon
so has part: feature:266322-266402:1:exon
so has part: feature:266850-266901:1:exon
so has part: feature:267242-267303:1:exon
so has part: feature:268250-270971:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:262526-262580:1:exon

position:262580:1
position: 262580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:266322-266402:1:exon

position:266322:1
position: 266322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:266402:1
position: 266402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:266850-266901:1:exon

position:266850:1
position: 266850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:266901:1
position: 266901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:267242-267303:1:exon

position:267242:1
position: 267242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:267303:1
position: 267303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:268250-270971:1:exon

position:268250:1
position: 268250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

DDA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: DDA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DET1- and DDB1-associated protein 1 isoform X2
translation: MADFLKGLPVYNKSNFSRFHADSVCKASNRRPSVYLPTREYPSEQIIVTEKTNILLRYLHQQWDKKNAAKKRDQEQVEIEGENSAPPRKIARTDSQDMNEDT
SIO_010081: DDA1
subclass of: SO_0000673
so part of: DDA1
location: join(262578..262580,266322..266402,266850..266901,267242..267303,268250..268360)
location: region:262578-268360:1
so has part: feature:262578-262580:1:exon
so has part: feature:266322-266402:1:exon
so has part: feature:266850-266901:1:exon
so has part: feature:267242-267303:1:exon
so has part: feature:268250-268360:1:exon

XP_030365383.1
type: Protein
SIO_000068: ncbiprotein

position:262578:1
position: 262578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:268360:1
position: 268360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:262578-262580:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:266322-266402:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:266850-266901:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:267242-267303:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:268250-268360:1:exon

DDA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: DDA1
product: DET1 and DDB1 associated 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 64 long SRA reads, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_030509522.1
SIO_010081: DDA1
subclass of: SO_0000673
so part of: DDA1
location: join(265173..265559,266322..266402,266850..266901,267242..267303,268250..270971)
location: region:265173-270971:1
so has part: feature:265173-265559:1:exon
so has part: feature:266322-266402:1:exon
so has part: feature:266850-266901:1:exon
so has part: feature:267242-267303:1:exon
so has part: feature:268250-270971:1:exon

position:265173:1
position: 265173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:265173-265559:1:exon

position:265559:1
position: 265559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:266322-266402:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:266850-266901:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:267242-267303:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:268250-270971:1:exon

DDA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: DDA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DET1- and DDB1-associated protein 1 isoform X1
translation: MPVPCCCGFIKPRGLCRVPVQQPALLGWADFLKGLPVYNKSNFSRFHADSVCKASNRRPSVYLPTREYPSEQIIVTEKTNILLRYLHQQWDKKNAAKKRDQEQVEIEGENSAPPRKIARTDSQDMNEDT
SIO_010081: DDA1
subclass of: SO_0000673
so part of: DDA1
location: join(265476..265559,266322..266402,266850..266901,267242..267303,268250..268360)
location: region:265476-268360:1
so has part: feature:265476-265559:1:exon
so has part: feature:266322-266402:1:exon
so has part: feature:266850-266901:1:exon
so has part: feature:267242-267303:1:exon
so has part: feature:268250-268360:1:exon

XP_030365382.1
type: Protein
SIO_000068: ncbiprotein

position:265476:1
position: 265476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:265476-265559:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:266322-266402:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:266850-266901:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:267242-267303:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:268250-268360:1:exon

ANO8
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: ANO8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(274471..285966)
location: region:274471-285966:-1
so has part: feature:274471-285966:-1:exon
subclass of: SO_0000010

115618199
type: Gene
SIO_000068: ncbigene

position:274471:-1
position: 274471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:285966:-1
position: 285966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:274471-285966:-1:exon

ANO8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: ANO8
product: anoctamin 8, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 64 long SRA reads, 1 Protein, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509525.2
SIO_010081: ANO8
subclass of: SO_0000673
so part of: ANO8
location: complement(join(274471..277239,277320..277430,277737..277868,277948..278139,278226..278897,279556..279630,279881..279936,280040..280166,280247..280399,280742..280903,281150..281277,281357..281473,281659..281755,282364..282502,282590..282722,282835..282945,285749..285966))
location: region:274471-285966:-1
so has part: feature:285749-285966:-1:exon
so has part: feature:282835-282945:-1:exon
so has part: feature:282590-282722:-1:exon
so has part: feature:282364-282502:-1:exon
so has part: feature:281659-281755:-1:exon
so has part: feature:281357-281473:-1:exon
so has part: feature:281150-281277:-1:exon
so has part: feature:280742-280903:-1:exon
so has part: feature:280247-280399:-1:exon
so has part: feature:280040-280166:-1:exon
so has part: feature:279881-279936:-1:exon
so has part: feature:279556-279630:-1:exon
so has part: feature:278226-278897:-1:exon
so has part: feature:277948-278139:-1:exon
so has part: feature:277737-277868:-1:exon
so has part: feature:277320-277430:-1:exon
so has part: feature:274471-277239:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:285749-285966:-1:exon

position:285749:-1
position: 285749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:282835-282945:-1:exon

position:282835:-1
position: 282835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:282945:-1
position: 282945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:282590-282722:-1:exon

position:282590:-1
position: 282590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:282722:-1
position: 282722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:282364-282502:-1:exon

position:282364:-1
position: 282364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:282502:-1
position: 282502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:281659-281755:-1:exon

position:281659:-1
position: 281659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:281755:-1
position: 281755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:281357-281473:-1:exon

position:281357:-1
position: 281357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:281473:-1
position: 281473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:281150-281277:-1:exon

position:281150:-1
position: 281150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:281277:-1
position: 281277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:280742-280903:-1:exon

position:280742:-1
position: 280742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:280903:-1
position: 280903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:280247-280399:-1:exon

position:280247:-1
position: 280247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:280399:-1
position: 280399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:280040-280166:-1:exon

position:280040:-1
position: 280040
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:280166:-1
position: 280166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:279881-279936:-1:exon

position:279881:-1
position: 279881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:279936:-1
position: 279936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:279556-279630:-1:exon

position:279556:-1
position: 279556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:279630:-1
position: 279630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:278226-278897:-1:exon

position:278226:-1
position: 278226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:278897:-1
position: 278897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:277948-278139:-1:exon

position:277948:-1
position: 277948
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:278139:-1
position: 278139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:277737-277868:-1:exon

position:277737:-1
position: 277737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:277868:-1
position: 277868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:277320-277430:-1:exon

position:277320:-1
position: 277320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:277430:-1
position: 277430
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:274471-277239:-1:exon

position:277239:-1
position: 277239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ANO8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: ANO8
product: anoctamin 8, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 64 long SRA reads, 2 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030509524.2
SIO_010081: ANO8
subclass of: SO_0000673
so part of: ANO8
location: complement(join(274471..277239,277320..277430,277737..277868,277948..278139,278226..278897,279361..279630,279881..279936,280040..280166,280247..280399,280742..280903,281150..281277,281357..281473,281659..281755,282364..282502,282590..282722,282835..282945,285749..285966))
location: region:274471-285966:-1
so has part: feature:285749-285966:-1:exon
so has part: feature:282835-282945:-1:exon
so has part: feature:282590-282722:-1:exon
so has part: feature:282364-282502:-1:exon
so has part: feature:281659-281755:-1:exon
so has part: feature:281357-281473:-1:exon
so has part: feature:281150-281277:-1:exon
so has part: feature:280742-280903:-1:exon
so has part: feature:280247-280399:-1:exon
so has part: feature:280040-280166:-1:exon
so has part: feature:279881-279936:-1:exon
so has part: feature:279361-279630:-1:exon
so has part: feature:278226-278897:-1:exon
so has part: feature:277948-278139:-1:exon
so has part: feature:277737-277868:-1:exon
so has part: feature:277320-277430:-1:exon
so has part: feature:274471-277239:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:285749-285966:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:282835-282945:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:282590-282722:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:282364-282502:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:281659-281755:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:281357-281473:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:281150-281277:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:280742-280903:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:280247-280399:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:280040-280166:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:279881-279936:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:279361-279630:-1:exon

position:279361:-1
position: 279361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:278226-278897:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:277948-278139:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:277737-277868:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:277320-277430:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:274471-277239:-1:exon

ANO8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: ANO8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: anoctamin-8 isoform X2
translation: MPEPPVAAQEGDRPRRAPAGEERTEPVAPTGVLDKLFGKRLLQAGRYIMSHKAWMKTVPTENCDVLMTFPDTTDDHTLLWLLNHIRLGIPELIVQVRHHKHTRVYAFFVTATYESLLRGADEIGLRKPVKAEFGGGMRSFSCEEDYIYENIENELYFFTSQERQNIIRYWLENLRAKQGESLHNIHFLEGQPIIPELAARGVIQQVFPLHEQRILKRLMKSWVQAVCEAQPLDEICDYFGVKIAMYFAWLGFYTSAMVYPAVFGSILYTFTENDQTSQDICCVVFAIFNVIWATLFLEEWKRRGAEFAYKWGTLDTPAESIEEPRPQFRGIKRISPVTSTEEFYYPPWKRLLFQCLVSLPICLTCLSLVFLLMLGCFQLQEFVLSIQELPRIIRFLPKILLAVIVTACDELYKKIAYWLNEMENYRLQSAYEKHLIIKIVLFQFVNSYLSLFYIGFYLKDMERLKEMLATLLITRQFLQNVREVSQPHLYRRLRRGDLNLHSLRQLAQALLCLLVPRRHPPAPSDGPRGEKKCLNGGCGVPEEEEEEEERRESDSEEESALDCGLKLKKVSFIEKAERRGTEPGGAEDESFLEEGSPTMVEKGMDPASVFELCEDEDEAEGAPGSPVKAMEPAVVPRAGRRRRVAESREEEEGEEEGRKRNRASWIDPPEEDYSTQLTQAEVESCMKKYEDTFQDYQEMFIQFGYVVLFSSAFPLAAMCALVNNIIEIRSDAFKLCTGLQRPFGQRVESIGQWQKVMEAMGVLAIVVNCYLIAQCGQLQRLFPWLSPEGAIISVVVLEHFALFLKYIIQVAIPDIPAWVAEEMAKLEYQRREAFKKHERQAQHHFQQQQRRKREEEERQRHAEYQARKERESSRDEAKPEATGQDPAHEKSQGKGKGSGGSSHGGSDKPKRPSSLLATNNVMKLKQIIPLQGKFLSGGAGAGSTATARSPQSPTGSENKLPGFLSFKFLKSPETKRDTGTEKVQSPTKPFNPGKLFNFGKSEGAGGNGAVATASPQPRPGPSVDTGERPVPSKSHLNGVPEEGSREEPESRAEEESGGYKL
SIO_010081: ANO8
subclass of: SO_0000673
so part of: ANO8
location: complement(join(276559..277239,277320..277430,277737..277868,277948..278139,278226..278897,279556..279630,279881..279936,280040..280166,280247..280399,280742..280903,281150..281277,281357..281473,281659..281755,282364..282502,282590..282722,282835..282945,285749..285848))
location: region:276559-285848:-1
so has part: feature:285749-285848:-1:exon
so has part: feature:282835-282945:-1:exon
so has part: feature:282590-282722:-1:exon
so has part: feature:282364-282502:-1:exon
so has part: feature:281659-281755:-1:exon
so has part: feature:281357-281473:-1:exon
so has part: feature:281150-281277:-1:exon
so has part: feature:280742-280903:-1:exon
so has part: feature:280247-280399:-1:exon
so has part: feature:280040-280166:-1:exon
so has part: feature:279881-279936:-1:exon
so has part: feature:279556-279630:-1:exon
so has part: feature:278226-278897:-1:exon
so has part: feature:277948-278139:-1:exon
so has part: feature:277737-277868:-1:exon
so has part: feature:277320-277430:-1:exon
so has part: feature:276559-277239:-1:exon

XP_030365385.1
type: Protein
SIO_000068: ncbiprotein

position:276559:-1
position: 276559
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:285848:-1
position: 285848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:285749-285848:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:282835-282945:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:282590-282722:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:282364-282502:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:281659-281755:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:281357-281473:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:281150-281277:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:280742-280903:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:280247-280399:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:280040-280166:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:279881-279936:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:279556-279630:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:278226-278897:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:277948-278139:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:277737-277868:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:277320-277430:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:276559-277239:-1:exon

ANO8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: ANO8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: anoctamin-8 isoform X1
translation: MPEPPVAAQEGDRPRRAPAGEERTEPVAPTGVLDKLFGKRLLQAGRYIMSHKAWMKTVPTENCDVLMTFPDTTDDHTLLWLLNHIRLGIPELIVQVRHHKHTRVYAFFVTATYESLLRGADEIGLRKPVKAEFGGGMRSFSCEEDYIYENIENELYFFTSQERQNIIRYWLENLRAKQGESLHNIHFLEGQPIIPELAARGVIQQVFPLHEQRILKRLMKSWVQAVCEAQPLDEICDYFGVKIAMYFAWLGFYTSAMVYPAVFGSILYTFTENDQTSQDICCVVFAIFNVIWATLFLEEWKRRGAEFAYKWGTLDTPAESIEEPRPQFRGIKRISPVTSTEEFYYPPWKRLLFQCLVSLPICLTCLSLVFLLMLGCFQLQEFVLSIQELPRIIRFLPKILLAVIVTACDELYKKIAYWLNEMENYRLQSAYEKHLIIKIVLFQFVNSYLSLFYIGFYLKDMERLKEVRRGRARGQRRRPEPPPAPPGRTSSTRPCHRVPPSRGGVSPRAPAAVPGCCCCCCAGSQLPLPLTMLATLLITRQFLQNVREVSQPHLYRRLRRGDLNLHSLRQLAQALLCLLVPRRHPPAPSDGPRGEKKCLNGGCGVPEEEEEEEERRESDSEEESALDCGLKLKKVSFIEKAERRGTEPGGAEDESFLEEGSPTMVEKGMDPASVFELCEDEDEAEGAPGSPVKAMEPAVVPRAGRRRRVAESREEEEGEEEGRKRNRASWIDPPEEDYSTQLTQAEVESCMKKYEDTFQDYQEMFIQFGYVVLFSSAFPLAAMCALVNNIIEIRSDAFKLCTGLQRPFGQRVESIGQWQKVMEAMGVLAIVVNCYLIAQCGQLQRLFPWLSPEGAIISVVVLEHFALFLKYIIQVAIPDIPAWVAEEMAKLEYQRREAFKKHERQAQHHFQQQQRRKREEEERQRHAEYQARKERESSRDEAKPEATGQDPAHEKSQGKGKGSGGSSHGGSDKPKRPSSLLATNNVMKLKQIIPLQGKFLSGGAGAGSTATARSPQSPTGSENKLPGFLSFKFLKSPETKRDTGTEKVQSPTKPFNPGKLFNFGKSEGAGGNGAVATASPQPRPGPSVDTGERPVPSKSHLNGVPEEGSREEPESRAEEESGGYKL
SIO_010081: ANO8
subclass of: SO_0000673
so part of: ANO8
location: complement(join(276559..277239,277320..277430,277737..277868,277948..278139,278226..278897,279361..279630,279881..279936,280040..280166,280247..280399,280742..280903,281150..281277,281357..281473,281659..281755,282364..282502,282590..282722,282835..282945,285749..285848))
location: region:276559-285848:-1
so has part: feature:285749-285848:-1:exon
so has part: feature:282835-282945:-1:exon
so has part: feature:282590-282722:-1:exon
so has part: feature:282364-282502:-1:exon
so has part: feature:281659-281755:-1:exon
so has part: feature:281357-281473:-1:exon
so has part: feature:281150-281277:-1:exon
so has part: feature:280742-280903:-1:exon
so has part: feature:280247-280399:-1:exon
so has part: feature:280040-280166:-1:exon
so has part: feature:279881-279936:-1:exon
so has part: feature:279361-279630:-1:exon
so has part: feature:278226-278897:-1:exon
so has part: feature:277948-278139:-1:exon
so has part: feature:277737-277868:-1:exon
so has part: feature:277320-277430:-1:exon
so has part: feature:276559-277239:-1:exon

XP_030365384.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:285749-285848:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:282835-282945:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:282590-282722:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:282364-282502:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:281659-281755:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:281357-281473:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:281150-281277:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:280742-280903:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:280247-280399:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:280040-280166:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:279881-279936:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:279361-279630:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:278226-278897:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:277948-278139:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:277737-277868:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:277320-277430:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:276559-277239:-1:exon

GTPBP3
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: GTPBP3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 288396..291500
location: region:288396-291500:1
so has part: feature:288396-291500:1:exon
subclass of: SO_0000010

115618201
type: Gene
SIO_000068: ncbigene

position:288396:1
position: 288396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:291500:1
position: 291500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:288396-291500:1:exon

GTPBP3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: GTPBP3
product: GTP binding protein 3, mitochondrial, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_030509527.1
SIO_010081: GTPBP3
subclass of: SO_0000673
so part of: GTPBP3
location: join(288396..288447,288935..289170,289587..289673,289759..289961,290080..290152,290235..290378,290520..290685,290807..291085,291171..291500)
location: region:288396-291500:1
so has part: feature:288396-288447:1:exon
so has part: feature:288935-289170:1:exon
so has part: feature:289587-289673:1:exon
so has part: feature:289759-289961:1:exon
so has part: feature:290080-290152:1:exon
so has part: feature:290235-290378:1:exon
so has part: feature:290520-290685:1:exon
so has part: feature:290807-291085:1:exon
so has part: feature:291171-291500:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:288396-288447:1:exon

position:288447:1
position: 288447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:288935-289170:1:exon

position:288935:1
position: 288935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:289170:1
position: 289170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:289587-289673:1:exon

position:289587:1
position: 289587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:289673:1
position: 289673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:289759-289961:1:exon

position:289759:1
position: 289759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:289961:1
position: 289961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:290080-290152:1:exon

position:290080:1
position: 290080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:290152:1
position: 290152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:290235-290378:1:exon

position:290235:1
position: 290235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:290378:1
position: 290378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:290520-290685:1:exon

position:290520:1
position: 290520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:290685:1
position: 290685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:290807-291085:1:exon

position:290807:1
position: 290807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:291085:1
position: 291085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:291171-291500:1:exon

position:291171:1
position: 291171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GTPBP3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: GTPBP3
product: GTP binding protein 3, mitochondrial, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 long SRA reads, 6 Proteins, and 88% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_030509526.1
SIO_010081: GTPBP3
subclass of: SO_0000673
so part of: GTPBP3
location: join(288402..289170,289587..289673,289759..289961,290080..290152,290235..290378,290520..290685,290807..291085,291171..291500)
location: region:288402-291500:1
so has part: feature:288402-289170:1:exon
so has part: feature:289587-289673:1:exon
so has part: feature:289759-289961:1:exon
so has part: feature:290080-290152:1:exon
so has part: feature:290235-290378:1:exon
so has part: feature:290520-290685:1:exon
so has part: feature:290807-291085:1:exon
so has part: feature:291171-291500:1:exon

position:288402:1
position: 288402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:288402-289170:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:289587-289673:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:289759-289961:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:290080-290152:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:290235-290378:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:290520-290685:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:290807-291085:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:291171-291500:1:exon

GTPBP3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: GTPBP3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tRNA modification GTPase GTPBP3, mitochondrial isoform X2
translation: MALRRALSAAGRRCAQRLCSAAWGDTIFAVSSGHGRCGVAVIRTSGPGSRGALQSLTGRPALPPPRVLALRRIRDPATGEPLDRGLVVWFQGPQSFTGEDCAELHVHGGPAVVSGVLRALGSLPGLRPAEPGEFTRRAFRRGKLDLTAAEGLGDLIRAETEAQRRQALRQMEGELGRLYQRWSNTLTQALAHLEAYIDFSEDDNVEEEVLSQVDATVRALEEEVGSHLQDGRRGELLRGGVRAVIAGPPNVGKSSLLNLLCQRPAAIVSPVAGTTRDVVEVALNVGGYPLVLSDTAGLRDATDPVEQEGVSRARDRLREADLVLAVLDAAAVPTEPAGLGAALGSLQPPTTTPCILVLNKADLLKGNGGSLRAACAQGHPLPPVTLLSCKTGEGLDRLLALLARELARLCGDPLSGSPSLTQSRHSLHLRQCAAALARYSRERRSDLGLAAERLRVARRHLGSITGHVSTEDVLDIIFRDFCVGK
SIO_010081: GTPBP3
subclass of: SO_0000673
so part of: GTPBP3
location: join(288410..288447,288935..289170,289587..289673,289759..289961,290080..290152,290235..290378,290520..290685,290807..291085,291171..291402)
location: region:288410-291402:1
so has part: feature:288410-288447:1:exon
so has part: feature:288935-289170:1:exon
so has part: feature:289587-289673:1:exon
so has part: feature:289759-289961:1:exon
so has part: feature:290080-290152:1:exon
so has part: feature:290235-290378:1:exon
so has part: feature:290520-290685:1:exon
so has part: feature:290807-291085:1:exon
so has part: feature:291171-291402:1:exon

XP_030365387.1
type: Protein
SIO_000068: ncbiprotein

position:288410:1
position: 288410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:291402:1
position: 291402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:288410-288447:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:288935-289170:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:289587-289673:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:289759-289961:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:290080-290152:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:290235-290378:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:290520-290685:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:290807-291085:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:291171-291402:1:exon

GTPBP3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: GTPBP3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tRNA modification GTPase GTPBP3, mitochondrial isoform X1
translation: MVGLGIPAPPLSHMGGVDGGPPHPCTPSPCCLPCPRCAQRLCSAAWGDTIFAVSSGHGRCGVAVIRTSGPGSRGALQSLTGRPALPPPRVLALRRIRDPATGEPLDRGLVVWFQGPQSFTGEDCAELHVHGGPAVVSGVLRALGSLPGLRPAEPGEFTRRAFRRGKLDLTAAEGLGDLIRAETEAQRRQALRQMEGELGRLYQRWSNTLTQALAHLEAYIDFSEDDNVEEEVLSQVDATVRALEEEVGSHLQDGRRGELLRGGVRAVIAGPPNVGKSSLLNLLCQRPAAIVSPVAGTTRDVVEVALNVGGYPLVLSDTAGLRDATDPVEQEGVSRARDRLREADLVLAVLDAAAVPTEPAGLGAALGSLQPPTTTPCILVLNKADLLKGNGGSLRAACAQGHPLPPVTLLSCKTGEGLDRLLALLARELARLCGDPLSGSPSLTQSRHSLHLRQCAAALARYSRERRSDLGLAAERLRVARRHLGSITGHVSTEDVLDIIFRDFCVGK
SIO_010081: GTPBP3
subclass of: SO_0000673
so part of: GTPBP3
location: join(288828..289170,289587..289673,289759..289961,290080..290152,290235..290378,290520..290685,290807..291085,291171..291402)
location: region:288828-291402:1
so has part: feature:288828-289170:1:exon
so has part: feature:289587-289673:1:exon
so has part: feature:289759-289961:1:exon
so has part: feature:290080-290152:1:exon
so has part: feature:290235-290378:1:exon
so has part: feature:290520-290685:1:exon
so has part: feature:290807-291085:1:exon
so has part: feature:291171-291402:1:exon

XP_030365386.1
type: Protein
SIO_000068: ncbiprotein

position:288828:1
position: 288828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:288828-289170:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:289587-289673:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:289759-289961:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:290080-290152:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:290235-290378:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:290520-290685:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:290807-291085:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:291171-291402:1:exon

PLVAP
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: PLVAP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(292583..295081)
location: region:292583-295081:-1
so has part: feature:292583-295081:-1:exon
subclass of: SO_0000010

115618230
type: Gene
SIO_000068: ncbigene

position:292583:-1
position: 292583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:295081:-1
position: 295081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:292583-295081:-1:exon

PLVAP
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: PLVAP
product: plasmalemma vesicle associated protein
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 185 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_030509585.1
SIO_010081: PLVAP
subclass of: SO_0000673
so part of: PLVAP
location: complement(join(292583..292843,292928..293006,293098..293206,293398..293987,294182..294272,294663..295081))
location: region:292583-295081:-1
so has part: feature:294663-295081:-1:exon
so has part: feature:294182-294272:-1:exon
so has part: feature:293398-293987:-1:exon
so has part: feature:293098-293206:-1:exon
so has part: feature:292928-293006:-1:exon
so has part: feature:292583-292843:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:294663-295081:-1:exon

position:294663:-1
position: 294663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:294182-294272:-1:exon

position:294182:-1
position: 294182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:294272:-1
position: 294272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:293398-293987:-1:exon

position:293398:-1
position: 293398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:293987:-1
position: 293987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:293098-293206:-1:exon

position:293098:-1
position: 293098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:293206:-1
position: 293206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:292928-293006:-1:exon

position:292928:-1
position: 292928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:293006:-1
position: 293006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:292583-292843:-1:exon

position:292843:-1
position: 292843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PLVAP
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: PLVAP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: plasmalemma vesicle-associated protein
translation: MEKSSYPMAKFGLEAKEVMPKRDCGFYVKYIFLFTSLIQFLIILGLVLFMVYGNAQAGTDTHLRLLEEQLQDRYSKIIALGERNINLTRTLNATLKEKQSLQALAQKVQRELEKCNSSQTPNPIPKLQEMMKIIFYQKTKLDECHMTIGLINASCSTDKVLLRSQLDQAAQAKKEQEENCRKEGALLSKATAEQESCQQELYNSRSLLESTRHNLELHKQECSTLRSDISYSFQRIKEMLSPYSCTAVHDQLNWLTQRTERLFLWQQDRDTKYVGKSVCEASLSQCHQNCSREKHELEKRLQDSEKQVKGGQEEKKKLLAEKEQLGKELEEKSKAAAQAWYFKDQLSICMGSKMDTFFDITGSRVRPGPFTSTSAFVDALRNQGIFGNMGKINAEEIQRSVQKIMEQYTSTLKIPSG
SIO_010081: PLVAP
subclass of: SO_0000673
so part of: PLVAP
location: complement(join(292837..292843,292928..293006,293098..293206,293398..293987,294182..294272,294663..295040))
location: region:292837-295040:-1
so has part: feature:294663-295040:-1:exon
so has part: feature:294182-294272:-1:exon
so has part: feature:293398-293987:-1:exon
so has part: feature:293098-293206:-1:exon
so has part: feature:292928-293006:-1:exon
so has part: feature:292837-292843:-1:exon

XP_030365445.1
type: Protein
SIO_000068: ncbiprotein

position:292837:-1
position: 292837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:295040:-1
position: 295040
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:294663-295040:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:294182-294272:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:293398-293987:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:293098-293206:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:292928-293006:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:292837-292843:-1:exon

CILP2
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: CILP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(307404..313431)
location: region:307404-313431:-1
so has part: feature:307404-313431:-1:exon
subclass of: SO_0000010

115618231
type: Gene
SIO_000068: ncbigene

position:307404:-1
position: 307404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:313431:-1
position: 313431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:307404-313431:-1:exon

CILP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: CILP2
product: cartilage intermediate layer protein 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 56% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030509586.1
SIO_010081: CILP2
subclass of: SO_0000673
so part of: CILP2
location: complement(join(307404..310050,310188..310345,310421..310529,310658..310918,311027..311185,311530..311712,311938..312210,312523..312621,313371..313431))
location: region:307404-313431:-1
so has part: feature:313371-313431:-1:exon
so has part: feature:312523-312621:-1:exon
so has part: feature:311938-312210:-1:exon
so has part: feature:311530-311712:-1:exon
so has part: feature:311027-311185:-1:exon
so has part: feature:310658-310918:-1:exon
so has part: feature:310421-310529:-1:exon
so has part: feature:310188-310345:-1:exon
so has part: feature:307404-310050:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:313371-313431:-1:exon

position:313371:-1
position: 313371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:312523-312621:-1:exon

position:312523:-1
position: 312523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:312621:-1
position: 312621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:311938-312210:-1:exon

position:311938:-1
position: 311938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:312210:-1
position: 312210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:311530-311712:-1:exon

position:311530:-1
position: 311530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:311712:-1
position: 311712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:311027-311185:-1:exon

position:311027:-1
position: 311027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:311185:-1
position: 311185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:310658-310918:-1:exon

position:310658:-1
position: 310658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:310918:-1
position: 310918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:310421-310529:-1:exon

position:310421:-1
position: 310421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:310529:-1
position: 310529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:310188-310345:-1:exon

position:310188:-1
position: 310188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:310345:-1
position: 310345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:307404-310050:-1:exon

position:310050:-1
position: 310050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CILP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: CILP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cartilage intermediate layer protein 2
translation: MGKLVLALLALAALHGASATEPLENDSEPGKSGTVGKPWKAAPSLAELDLDTAGRGAEWTSWFNIDHPGGDGDHESLEAIRFYYRGRVCERPVAIQARTTEWELPEDVGEVVHISPKKGFRCINKEQPPGKTCSNYHIRFLCPLEHIYWSHWSSWSPCSRSTCDTSGTQTRTRRCVNARLVAALKEIKCKGKAMERRTCSAGPCPEPAWTEWGSWGPCSRSCGSAGKRVRRRSCKTAKKVPCSGRPTEVQKCPPSPCPACPEHTLQGTVVSASGLALPDARIYLEGRPPVLLAHSDAHGRFTVAGLCQSTTANISAHRHGFAPALAPIISNGSGVAVAHVRLQRLEKPYMVLHPKAKVRVAGQEVTFCCKASGTPVPKKYYWYHNGTLLERKVHRYGSHLVLQGLTPEQAGTYHCKASTEAGAIRSAPAELTVLAQGQQNCKAEPESSLVELPSECPQDATGSRYYNVGRCAPAPCTGSPGEAAACGEDAGHCCGVRRMEMREIPCAGSLLPIKVVAECGCGPCAQPRVLVQGRVTAADTGEPLRFGQIFLGGRKVGFTGYKGSFTIEVPPDTQRLVARFVDRQQRFVDAIKVLPFNRRGGAIYQEVKMLRKKEPVALDGSRNNAIPLGEASGRDPIGELVLPAGVFLRPSGEVFKGTVKASVTFLDPRDMATASAASSDLSFANAEGEIVPLRTYGMFAVDFREGESGAALQTGPVEVRMDAGQVWMPEHLQKMKLWSLNPETGLWEEEGILRPARGSRGKREERTFLVGNLEIRERRLFNLDVPEDRRCFVKVRAYSNEKFNPYEQLEGVVISLINLEPQPGYPANPRAWGRFDSVVTGPNGACLPAFCDGQRPDAYSAYVTATLGGEELEAVASSPKLNPNAVGVSQPYLGKLDYRRLDHDDPNLKKTAFQINMAKPDPNNVDETNGPIYPYRSLEECEEAPVSANHLRFYRVEVDKYEYNVVPFKESDLTSWTGDYLSWWPNPQEFRACFIKVQIEGPQEYMVRSRNVGGSHPRTRGQLYGLRDTRSVRDMLLENTSGACVEFKCSGMLFDQSLVDRTLVSIIPQGSCRRTAINSLLREYLSRHPPVAENNHTAAFTMLAPVDPLGHNYGIYTVTDQNPRLAKEIAIGRCFDGTSDGFSREMKADAGTAVTFTCQERPPGRESFFQRLLTAPAEALAEIRREMGTSEMRRAPPDVMDFASGAQAPGPTATRRTPSSPRRMGRSREQA
SIO_010081: CILP2
subclass of: SO_0000673
so part of: CILP2
location: complement(join(307658..310050,310188..310345,310421..310529,310658..310918,311027..311185,311530..311712,311938..312210,312523..312621,313371..313431))
location: region:307658-313431:-1
so has part: feature:313371-313431:-1:exon
so has part: feature:312523-312621:-1:exon
so has part: feature:311938-312210:-1:exon
so has part: feature:311530-311712:-1:exon
so has part: feature:311027-311185:-1:exon
so has part: feature:310658-310918:-1:exon
so has part: feature:310421-310529:-1:exon
so has part: feature:310188-310345:-1:exon
so has part: feature:307658-310050:-1:exon

XP_030365446.1
type: Protein
SIO_000068: ncbiprotein

position:307658:-1
position: 307658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:313371-313431:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:312523-312621:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:311938-312210:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:311530-311712:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:311027-311185:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:310658-310918:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:310421-310529:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:310188-310345:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:307658-310050:-1:exon

YJEFN3
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: YJEFN3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(314363..320073)
location: region:314363-320073:-1
so has part: feature:314363-320073:-1:exon
subclass of: SO_0000010

115618075
type: Gene
SIO_000068: ncbigene

position:314363:-1
position: 314363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:320073:-1
position: 320073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:314363-320073:-1:exon

YJEFN3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: YJEFN3
product: YjeF N-terminal domain containing 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 365 long SRA reads, 11 Proteins, and 79% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509233.1
SIO_010081: YJEFN3
subclass of: SO_0000673
so part of: YJEFN3
location: complement(join(314363..314595,315172..315322,315768..315881,315963..316073,317285..317393,319778..320073))
location: region:314363-320073:-1
so has part: feature:319778-320073:-1:exon
so has part: feature:317285-317393:-1:exon
so has part: feature:315963-316073:-1:exon
so has part: feature:315768-315881:-1:exon
so has part: feature:315172-315322:-1:exon
so has part: feature:314363-314595:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:319778-320073:-1:exon

position:319778:-1
position: 319778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:317285-317393:-1:exon

position:317285:-1
position: 317285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:317393:-1
position: 317393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:315963-316073:-1:exon

position:315963:-1
position: 315963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:316073:-1
position: 316073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:315768-315881:-1:exon

position:315768:-1
position: 315768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:315881:-1
position: 315881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:315172-315322:-1:exon

position:315172:-1
position: 315172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:315322:-1
position: 315322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:314363-314595:-1:exon

position:314595:-1
position: 314595
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

YJEFN3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: YJEFN3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: yjeF N-terminal domain-containing protein 3
translation: MSSAPGPAREPPRYLSKAEAEAIEKELLEDYRFGRQQLIEIWGHACAMAVTKAFPLPSLPRKQPTVLVVCGPAQNGAIGLVCARHLRIFDYEPTIFYPKRSPDPLYQDFTTQCEKMDIPFLSYLPTEVQLINDAYNAVVDAVLGAEAEAAEGREPCAAILSTLKLIRIPIVSLDVPSGWDVEAGSSGGISPDVLVSLSAPKQCARRFLGRQHFVAGRFLPYDVQKKFELNPPEYPGTECVVALRAPRQ
SIO_010081: YJEFN3
subclass of: SO_0000673
so part of: YJEFN3
location: complement(join(314381..314595,315172..315322,315768..315881,315963..316073,317285..317393,319778..319824))
location: region:314381-319824:-1
so has part: feature:319778-319824:-1:exon
so has part: feature:317285-317393:-1:exon
so has part: feature:315963-316073:-1:exon
so has part: feature:315768-315881:-1:exon
so has part: feature:315172-315322:-1:exon
so has part: feature:314381-314595:-1:exon

XP_030365093.1
type: Protein
SIO_000068: ncbiprotein

position:314381:-1
position: 314381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:319824:-1
position: 319824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:319778-319824:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:317285-317393:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:315963-316073:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:315768-315881:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:315172-315322:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:314381-314595:-1:exon

NDUFA13
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: NDUFA13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(320451..321536)
location: region:320451-321536:-1
so has part: feature:320451-321536:-1:exon
subclass of: SO_0000010

115618076
type: Gene
SIO_000068: ncbigene

position:320451:-1
position: 320451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:321536:-1
position: 321536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:320451-321536:-1:exon

NDUFA13
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: NDUFA13
product: NADH:ubiquinone oxidoreductase subunit A13
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 904 long SRA reads, 12 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_030509234.1
SIO_010081: NDUFA13
subclass of: SO_0000673
so part of: NDUFA13
location: complement(join(320451..320668,320865..320934,321017..321088,321212..321290,321369..321536))
location: region:320451-321536:-1
so has part: feature:321369-321536:-1:exon
so has part: feature:321212-321290:-1:exon
so has part: feature:321017-321088:-1:exon
so has part: feature:320865-320934:-1:exon
so has part: feature:320451-320668:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:321369-321536:-1:exon

position:321369:-1
position: 321369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:321212-321290:-1:exon

position:321212:-1
position: 321212
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:321290:-1
position: 321290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:321017-321088:-1:exon

position:321017:-1
position: 321017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:321088:-1
position: 321088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:320865-320934:-1:exon

position:320865:-1
position: 320865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:320934:-1
position: 320934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:320451-320668:-1:exon

position:320668:-1
position: 320668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NDUFA13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: NDUFA13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
translation: MAAPKVKQDMAPPGGYGPIDYKRHLPRRGLSGYSLFALGAGSLLLGYYTLVKWNRERRRLLIEDLEARIALMPLLQAESDRRTLRMLRQNLDEEAKIMKDVPGWKVGESRFHTDRWVPPTLDELYYLRPTSEVENEKFGLQYYV
SIO_010081: NDUFA13
subclass of: SO_0000673
so part of: NDUFA13
location: complement(join(320549..320668,320865..320934,321017..321088,321212..321290,321369..321462))
location: region:320549-321462:-1
so has part: feature:321369-321462:-1:exon
so has part: feature:321212-321290:-1:exon
so has part: feature:321017-321088:-1:exon
so has part: feature:320865-320934:-1:exon
so has part: feature:320549-320668:-1:exon

XP_030365094.1
type: Protein
SIO_000068: ncbiprotein

position:320549:-1
position: 320549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:321462:-1
position: 321462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:321369-321462:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:321212-321290:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:321017-321088:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:320865-320934:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:320549-320668:-1:exon

GATAD2A
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: GATAD2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(323156..377998)
location: region:323156-377998:-1
so has part: feature:323156-377998:-1:exon
subclass of: SO_0000010

115618078
type: Gene
SIO_000068: ncbigene

position:323156:-1
position: 323156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:377998:-1
position: 377998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:323156-377998:-1:exon

GATAD2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: GATAD2A
product: GATA zinc finger domain containing 2A, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 13 ESTs, 298 long SRA reads, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_030509242.1
SIO_010081: GATAD2A
subclass of: SO_0000673
so part of: GATAD2A
location: complement(join(323156..326676,327563..327746,328594..328883,329331..329610,330294..330461,331539..331670,334892..335023,335495..335624,344751..345022,353590..353661,377902..377998))
location: region:323156-377998:-1
so has part: feature:377902-377998:-1:exon
so has part: feature:353590-353661:-1:exon
so has part: feature:344751-345022:-1:exon
so has part: feature:335495-335624:-1:exon
so has part: feature:334892-335023:-1:exon
so has part: feature:331539-331670:-1:exon
so has part: feature:330294-330461:-1:exon
so has part: feature:329331-329610:-1:exon
so has part: feature:328594-328883:-1:exon
so has part: feature:327563-327746:-1:exon
so has part: feature:323156-326676:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:377902-377998:-1:exon

position:377902:-1
position: 377902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:353590-353661:-1:exon

position:353590:-1
position: 353590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:353661:-1
position: 353661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:344751-345022:-1:exon

position:344751:-1
position: 344751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:345022:-1
position: 345022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:335495-335624:-1:exon

position:335495:-1
position: 335495
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:335624:-1
position: 335624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:334892-335023:-1:exon

position:334892:-1
position: 334892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:335023:-1
position: 335023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:331539-331670:-1:exon

position:331539:-1
position: 331539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:331670:-1
position: 331670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:330294-330461:-1:exon

position:330294:-1
position: 330294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:330461:-1
position: 330461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:329331-329610:-1:exon

position:329331:-1
position: 329331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:329610:-1
position: 329610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:328594-328883:-1:exon

position:328594:-1
position: 328594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:328883:-1
position: 328883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:327563-327746:-1:exon

position:327563:-1
position: 327563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:327746:-1
position: 327746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:323156-326676:-1:exon

position:326676:-1
position: 326676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

GATAD2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: GATAD2A
product: GATA zinc finger domain containing 2A, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs, 280 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_030509241.1
SIO_010081: GATAD2A
subclass of: SO_0000673
so part of: GATAD2A
location: complement(join(323156..326676,327632..327746,328594..328883,329331..329610,330294..330461,331539..331670,333461..333550,334892..335023,335495..335624,344751..345022,353590..353661,377902..377998))
location: region:323156-377998:-1
so has part: feature:377902-377998:-1:exon
so has part: feature:353590-353661:-1:exon
so has part: feature:344751-345022:-1:exon
so has part: feature:335495-335624:-1:exon
so has part: feature:334892-335023:-1:exon
so has part: feature:333461-333550:-1:exon
so has part: feature:331539-331670:-1:exon
so has part: feature:330294-330461:-1:exon
so has part: feature:329331-329610:-1:exon
so has part: feature:328594-328883:-1:exon
so has part: feature:327632-327746:-1:exon
so has part: feature:323156-326676:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:377902-377998:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:353590-353661:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:344751-345022:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:335495-335624:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:334892-335023:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:333461-333550:-1:exon

position:333461:-1
position: 333461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:333550:-1
position: 333550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:331539-331670:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:330294-330461:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:329331-329610:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:328594-328883:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:327632-327746:-1:exon

position:327632:-1
position: 327632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:323156-326676:-1:exon

GATAD2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: GATAD2A
product: GATA zinc finger domain containing 2A, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 14 ESTs, 301 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_030509236.1
SIO_010081: GATAD2A
subclass of: SO_0000673
so part of: GATAD2A
location: complement(join(323156..326676,327563..327746,328594..328883,329331..329610,330294..330461,331539..331670,333461..333550,334892..335023,335495..335624,344751..345022,353590..353661,377902..377998))
location: region:323156-377998:-1
so has part: feature:377902-377998:-1:exon
so has part: feature:353590-353661:-1:exon
so has part: feature:344751-345022:-1:exon
so has part: feature:335495-335624:-1:exon
so has part: feature:334892-335023:-1:exon
so has part: feature:333461-333550:-1:exon
so has part: feature:331539-331670:-1:exon
so has part: feature:330294-330461:-1:exon
so has part: feature:329331-329610:-1:exon
so has part: feature:328594-328883:-1:exon
so has part: feature:327563-327746:-1:exon
so has part: feature:323156-326676:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:377902-377998:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:353590-353661:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:344751-345022:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:335495-335624:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:334892-335023:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:333461-333550:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:331539-331670:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:330294-330461:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:329331-329610:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:328594-328883:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:327563-327746:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:323156-326676:-1:exon

GATAD2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: GATAD2A
product: GATA zinc finger domain containing 2A, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 14 ESTs, 298 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030509239.1
SIO_010081: GATAD2A
subclass of: SO_0000673
so part of: GATAD2A
location: complement(join(323156..326676,327563..327746,328594..328883,329331..329610,330294..330461,331539..331670,333461..333550,334892..335023,335495..335624,344751..345022,353590..353661,359375..359553,377902..377968))
location: region:323156-377968:-1
so has part: feature:377902-377968:-1:exon
so has part: feature:359375-359553:-1:exon
so has part: feature:353590-353661:-1:exon
so has part: feature:344751-345022:-1:exon
so has part: feature:335495-335624:-1:exon
so has part: feature:334892-335023:-1:exon
so has part: feature:333461-333550:-1:exon
so has part: feature:331539-331670:-1:exon
so has part: feature:330294-330461:-1:exon
so has part: feature:329331-329610:-1:exon
so has part: feature:328594-328883:-1:exon
so has part: feature:327563-327746:-1:exon
so has part: feature:323156-326676:-1:exon

position:377968:-1
position: 377968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:377902-377968:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:359375-359553:-1:exon

position:359375:-1
position: 359375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:359553:-1
position: 359553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:353590-353661:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:344751-345022:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:335495-335624:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:334892-335023:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:333461-333550:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:331539-331670:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:330294-330461:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:329331-329610:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:328594-328883:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:327563-327746:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:323156-326676:-1:exon

GATAD2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: GATAD2A
product: GATA zinc finger domain containing 2A, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 14 ESTs, 300 long SRA reads, 5 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_030509238.1
SIO_010081: GATAD2A
subclass of: SO_0000673
so part of: GATAD2A
location: complement(join(323156..326676,327563..327746,328594..328883,329331..329610,330294..330461,331539..331670,333461..333550,334892..335023,335495..335624,344751..345022,353590..353661,367760..368059))
location: region:323156-368059:-1
so has part: feature:367760-368059:-1:exon
so has part: feature:353590-353661:-1:exon
so has part: feature:344751-345022:-1:exon
so has part: feature:335495-335624:-1:exon
so has part: feature:334892-335023:-1:exon
so has part: feature:333461-333550:-1:exon
so has part: feature:331539-331670:-1:exon
so has part: feature:330294-330461:-1:exon
so has part: feature:329331-329610:-1:exon
so has part: feature:328594-328883:-1:exon
so has part: feature:327563-327746:-1:exon
so has part: feature:323156-326676:-1:exon

position:368059:-1
position: 368059
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:367760-368059:-1:exon

position:367760:-1
position: 367760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:353590-353661:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:344751-345022:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:335495-335624:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:334892-335023:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:333461-333550:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:331539-331670:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:330294-330461:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:329331-329610:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:328594-328883:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:327563-327746:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:323156-326676:-1:exon

GATAD2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: GATAD2A
product: GATA zinc finger domain containing 2A, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 13 ESTs, 295 long SRA reads, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_032920358.1
SIO_010081: GATAD2A
subclass of: SO_0000673
so part of: GATAD2A
location: complement(join(323156..326676,327563..327746,328594..328883,329331..329610,330294..330461,331539..331670,334892..335023,335495..335624,344751..345022,353590..353661,367760..368020))
location: region:323156-368020:-1
so has part: feature:367760-368020:-1:exon
so has part: feature:353590-353661:-1:exon
so has part: feature:344751-345022:-1:exon
so has part: feature:335495-335624:-1:exon
so has part: feature:334892-335023:-1:exon
so has part: feature:331539-331670:-1:exon
so has part: feature:330294-330461:-1:exon
so has part: feature:329331-329610:-1:exon
so has part: feature:328594-328883:-1:exon
so has part: feature:327563-327746:-1:exon
so has part: feature:323156-326676:-1:exon

position:368020:-1
position: 368020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:367760-368020:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:353590-353661:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:344751-345022:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:335495-335624:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:334892-335023:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:331539-331670:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:330294-330461:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:329331-329610:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:328594-328883:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:327563-327746:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:323156-326676:-1:exon

GATAD2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: GATAD2A
product: GATA zinc finger domain containing 2A, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 14 ESTs, 298 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030509240.1
SIO_010081: GATAD2A
subclass of: SO_0000673
so part of: GATAD2A
location: complement(join(323156..326676,327563..327746,328594..328883,329331..329610,330294..330461,331539..331670,333461..333550,334892..335023,335495..335624,344751..345022,353590..353661,366738..366911))
location: region:323156-366911:-1
so has part: feature:366738-366911:-1:exon
so has part: feature:353590-353661:-1:exon
so has part: feature:344751-345022:-1:exon
so has part: feature:335495-335624:-1:exon
so has part: feature:334892-335023:-1:exon
so has part: feature:333461-333550:-1:exon
so has part: feature:331539-331670:-1:exon
so has part: feature:330294-330461:-1:exon
so has part: feature:329331-329610:-1:exon
so has part: feature:328594-328883:-1:exon
so has part: feature:327563-327746:-1:exon
so has part: feature:323156-326676:-1:exon

position:366911:-1
position: 366911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:366738-366911:-1:exon

position:366738:-1
position: 366738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:353590-353661:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:344751-345022:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:335495-335624:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:334892-335023:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:333461-333550:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:331539-331670:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:330294-330461:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:329331-329610:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:328594-328883:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:327563-327746:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:323156-326676:-1:exon

GATAD2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: GATAD2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcriptional repressor p66-alpha isoform X3
translation: MTEEACRTRSQKRALEREVPHNDVDSKKLKMEKGLLGTEINAEGDMKIKADPGAGKVQGLLKGGEVKATIKVEVQTGDEPVDMSTSKSELKREKRVPSPDVIVLSDNEPSSPRMNGLTKIALKETNTEALMKSSPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQKETTIQKTSSTRIPGTVIPPPLVRGGQQTSSKLGTQQNTQIVMPPLVRGAQQIHNIRQHSSTGPPPLLLAPRASVPSVQIQGQRIIQQGLIRVANVPNTSLLVNIPQASPTSIKGTSVTSAQANATPSSAASMGNAGESPASRQAAAKLALRKQLEKTLLEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQGKVSVAVSSREPYMCAQCKTDFTCRWREEKNGIIMCETCMTSNQKKALKAEHTNRLKAAFVKALQQEQEIEQRILQQTSAPVQTKSDPIVQHHSLKQTSSQMSRGPGAPRGVLHAFSQSPKLQNASSAAALGSRPGKHAERPVSKGSAAAWKKTPINTGGALPFVNPSLAVHKSSSAVDRQREYLLDMIPPRSIPQSATWK
SIO_010081: GATAD2A
subclass of: SO_0000673
so part of: GATAD2A
location: complement(join(326546..326676,327563..327746,328594..328883,329331..329610,330294..330461,331539..331670,334892..335023,335495..335624,344751..345013))
location: region:326546-345013:-1
so has part: feature:344751-345013:-1:exon
so has part: feature:335495-335624:-1:exon
so has part: feature:334892-335023:-1:exon
so has part: feature:331539-331670:-1:exon
so has part: feature:330294-330461:-1:exon
so has part: feature:329331-329610:-1:exon
so has part: feature:328594-328883:-1:exon
so has part: feature:327563-327746:-1:exon
so has part: feature:326546-326676:-1:exon

XP_030365102.1
type: Protein
SIO_000068: ncbiprotein

position:326546:-1
position: 326546
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:345013:-1
position: 345013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:344751-345013:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:335495-335624:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:334892-335023:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:331539-331670:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:330294-330461:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:329331-329610:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:328594-328883:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:327563-327746:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:326546-326676:-1:exon

GATAD2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: GATAD2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcriptional repressor p66-alpha isoform X3
translation: MTEEACRTRSQKRALEREVPHNDVDSKKLKMEKGLLGTEINAEGDMKIKADPGAGKVQGLLKGGEVKATIKVEVQTGDEPVDMSTSKSELKREKRVPSPDVIVLSDNEPSSPRMNGLTKIALKETNTEALMKSSPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQKETTIQKTSSTRIPGTVIPPPLVRGGQQTSSKLGTQQNTQIVMPPLVRGAQQIHNIRQHSSTGPPPLLLAPRASVPSVQIQGQRIIQQGLIRVANVPNTSLLVNIPQASPTSIKGTSVTSAQANATPSSAASMGNAGESPASRQAAAKLALRKQLEKTLLEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQGKVSVAVSSREPYMCAQCKTDFTCRWREEKNGIIMCETCMTSNQKKALKAEHTNRLKAAFVKALQQEQEIEQRILQQTSAPVQTKSDPIVQHHSLKQTSSQMSRGPGAPRGVLHAFSQSPKLQNASSAAALGSRPGKHAERPVSKGSAAAWKKTPINTGGALPFVNPSLAVHKSSSAVDRQREYLLDMIPPRSIPQSATWK
SIO_010081: GATAD2A
subclass of: SO_0000673
so part of: GATAD2A
location: complement(join(326546..326676,327563..327746,328594..328883,329331..329610,330294..330461,331539..331670,334892..335023,335495..335624,344751..345013))
location: region:326546-345013:-1
so has part: feature:344751-345013:-1:exon
so has part: feature:335495-335624:-1:exon
so has part: feature:334892-335023:-1:exon
so has part: feature:331539-331670:-1:exon
so has part: feature:330294-330461:-1:exon
so has part: feature:329331-329610:-1:exon
so has part: feature:328594-328883:-1:exon
so has part: feature:327563-327746:-1:exon
so has part: feature:326546-326676:-1:exon

XP_032776249.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:344751-345013:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:335495-335624:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:334892-335023:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:331539-331670:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:330294-330461:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:329331-329610:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:328594-328883:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:327563-327746:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:326546-326676:-1:exon

GATAD2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: GATAD2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcriptional repressor p66-alpha isoform X2
translation: MTEEACRTRSQKRALEREVPHNDVDSKKLKMEKGLLGTEINAEGDMKIKADPGAGKVQGLLKGGEVKATIKVEVQTGDEPVDMSTSKSELKREKRVPSPDVIVLSDNEPSSPRMNGLTKIALKETNTEALMKSSPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQKETTIQKPAGSSGSAVATPPPLVRGPQSVAAGKPSLQTSSTRIPGTVIPPPLVRGGQQTSSKLGTQQNTQIVMPPLVRGAQQIHNIRQHSSTGPPPLLLAPRASVPSVQIQGQRIIQQGLIRVANVPNTSLLVNIPQASPTSIKGTSVTSAQANATPSSAASMGNAGESPASRQAAAKLALRKQLEKTLLEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQGKVSVAVSSREPYMCAQCKTDFTCRWREEKNGIIMCETCMTSNQKKALKAEHTNRLKAAFVKALQQEQEIEQRILQQTSAPVQTKSDPIVQHHSLKQTSSQMSRGPGAPRGVLHAFSQSPKLQNASSAAALGSRPGGALPFVNPSLAVHKSSSAVDRQREYLLDMIPPRSIPQSATWK
SIO_010081: GATAD2A
subclass of: SO_0000673
so part of: GATAD2A
location: complement(join(326546..326676,327632..327746,328594..328883,329331..329610,330294..330461,331539..331670,333461..333550,334892..335023,335495..335624,344751..345013))
location: region:326546-345013:-1
so has part: feature:344751-345013:-1:exon
so has part: feature:335495-335624:-1:exon
so has part: feature:334892-335023:-1:exon
so has part: feature:333461-333550:-1:exon
so has part: feature:331539-331670:-1:exon
so has part: feature:330294-330461:-1:exon
so has part: feature:329331-329610:-1:exon
so has part: feature:328594-328883:-1:exon
so has part: feature:327632-327746:-1:exon
so has part: feature:326546-326676:-1:exon

XP_030365101.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:344751-345013:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:335495-335624:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:334892-335023:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:333461-333550:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:331539-331670:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:330294-330461:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:329331-329610:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:328594-328883:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:327632-327746:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:326546-326676:-1:exon

GATAD2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: GATAD2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcriptional repressor p66-alpha isoform X1
translation: MTEEACRTRSQKRALEREVPHNDVDSKKLKMEKGLLGTEINAEGDMKIKADPGAGKVQGLLKGGEVKATIKVEVQTGDEPVDMSTSKSELKREKRVPSPDVIVLSDNEPSSPRMNGLTKIALKETNTEALMKSSPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQKETTIQKPAGSSGSAVATPPPLVRGPQSVAAGKPSLQTSSTRIPGTVIPPPLVRGGQQTSSKLGTQQNTQIVMPPLVRGAQQIHNIRQHSSTGPPPLLLAPRASVPSVQIQGQRIIQQGLIRVANVPNTSLLVNIPQASPTSIKGTSVTSAQANATPSSAASMGNAGESPASRQAAAKLALRKQLEKTLLEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQGKVSVAVSSREPYMCAQCKTDFTCRWREEKNGIIMCETCMTSNQKKALKAEHTNRLKAAFVKALQQEQEIEQRILQQTSAPVQTKSDPIVQHHSLKQTSSQMSRGPGAPRGVLHAFSQSPKLQNASSAAALGSRPGKHAERPVSKGSAAAWKKTPINTGGALPFVNPSLAVHKSSSAVDRQREYLLDMIPPRSIPQSATWK
SIO_010081: GATAD2A
subclass of: SO_0000673
so part of: GATAD2A
location: complement(join(326546..326676,327563..327746,328594..328883,329331..329610,330294..330461,331539..331670,333461..333550,334892..335023,335495..335624,344751..345013))
location: region:326546-345013:-1
so has part: feature:344751-345013:-1:exon
so has part: feature:335495-335624:-1:exon
so has part: feature:334892-335023:-1:exon
so has part: feature:333461-333550:-1:exon
so has part: feature:331539-331670:-1:exon
so has part: feature:330294-330461:-1:exon
so has part: feature:329331-329610:-1:exon
so has part: feature:328594-328883:-1:exon
so has part: feature:327563-327746:-1:exon
so has part: feature:326546-326676:-1:exon

XP_030365096.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:344751-345013:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:335495-335624:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:334892-335023:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:333461-333550:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:331539-331670:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:330294-330461:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:329331-329610:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:328594-328883:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:327563-327746:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:326546-326676:-1:exon

GATAD2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: GATAD2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcriptional repressor p66-alpha isoform X1
translation: MTEEACRTRSQKRALEREVPHNDVDSKKLKMEKGLLGTEINAEGDMKIKADPGAGKVQGLLKGGEVKATIKVEVQTGDEPVDMSTSKSELKREKRVPSPDVIVLSDNEPSSPRMNGLTKIALKETNTEALMKSSPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQKETTIQKPAGSSGSAVATPPPLVRGPQSVAAGKPSLQTSSTRIPGTVIPPPLVRGGQQTSSKLGTQQNTQIVMPPLVRGAQQIHNIRQHSSTGPPPLLLAPRASVPSVQIQGQRIIQQGLIRVANVPNTSLLVNIPQASPTSIKGTSVTSAQANATPSSAASMGNAGESPASRQAAAKLALRKQLEKTLLEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQGKVSVAVSSREPYMCAQCKTDFTCRWREEKNGIIMCETCMTSNQKKALKAEHTNRLKAAFVKALQQEQEIEQRILQQTSAPVQTKSDPIVQHHSLKQTSSQMSRGPGAPRGVLHAFSQSPKLQNASSAAALGSRPGKHAERPVSKGSAAAWKKTPINTGGALPFVNPSLAVHKSSSAVDRQREYLLDMIPPRSIPQSATWK
SIO_010081: GATAD2A
subclass of: SO_0000673
so part of: GATAD2A
location: complement(join(326546..326676,327563..327746,328594..328883,329331..329610,330294..330461,331539..331670,333461..333550,334892..335023,335495..335624,344751..345013))
location: region:326546-345013:-1
so has part: feature:344751-345013:-1:exon
so has part: feature:335495-335624:-1:exon
so has part: feature:334892-335023:-1:exon
so has part: feature:333461-333550:-1:exon
so has part: feature:331539-331670:-1:exon
so has part: feature:330294-330461:-1:exon
so has part: feature:329331-329610:-1:exon
so has part: feature:328594-328883:-1:exon
so has part: feature:327563-327746:-1:exon
so has part: feature:326546-326676:-1:exon

XP_030365098.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:344751-345013:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:335495-335624:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:334892-335023:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:333461-333550:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:331539-331670:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:330294-330461:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:329331-329610:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:328594-328883:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:327563-327746:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:326546-326676:-1:exon

GATAD2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: GATAD2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcriptional repressor p66-alpha isoform X1
translation: MTEEACRTRSQKRALEREVPHNDVDSKKLKMEKGLLGTEINAEGDMKIKADPGAGKVQGLLKGGEVKATIKVEVQTGDEPVDMSTSKSELKREKRVPSPDVIVLSDNEPSSPRMNGLTKIALKETNTEALMKSSPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQKETTIQKPAGSSGSAVATPPPLVRGPQSVAAGKPSLQTSSTRIPGTVIPPPLVRGGQQTSSKLGTQQNTQIVMPPLVRGAQQIHNIRQHSSTGPPPLLLAPRASVPSVQIQGQRIIQQGLIRVANVPNTSLLVNIPQASPTSIKGTSVTSAQANATPSSAASMGNAGESPASRQAAAKLALRKQLEKTLLEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQGKVSVAVSSREPYMCAQCKTDFTCRWREEKNGIIMCETCMTSNQKKALKAEHTNRLKAAFVKALQQEQEIEQRILQQTSAPVQTKSDPIVQHHSLKQTSSQMSRGPGAPRGVLHAFSQSPKLQNASSAAALGSRPGKHAERPVSKGSAAAWKKTPINTGGALPFVNPSLAVHKSSSAVDRQREYLLDMIPPRSIPQSATWK
SIO_010081: GATAD2A
subclass of: SO_0000673
so part of: GATAD2A
location: complement(join(326546..326676,327563..327746,328594..328883,329331..329610,330294..330461,331539..331670,333461..333550,334892..335023,335495..335624,344751..345013))
location: region:326546-345013:-1
so has part: feature:344751-345013:-1:exon
so has part: feature:335495-335624:-1:exon
so has part: feature:334892-335023:-1:exon
so has part: feature:333461-333550:-1:exon
so has part: feature:331539-331670:-1:exon
so has part: feature:330294-330461:-1:exon
so has part: feature:329331-329610:-1:exon
so has part: feature:328594-328883:-1:exon
so has part: feature:327563-327746:-1:exon
so has part: feature:326546-326676:-1:exon

XP_030365099.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:344751-345013:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:335495-335624:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:334892-335023:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:333461-333550:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:331539-331670:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:330294-330461:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:329331-329610:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:328594-328883:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:327563-327746:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:326546-326676:-1:exon

GATAD2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: GATAD2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcriptional repressor p66-alpha isoform X1
translation: MTEEACRTRSQKRALEREVPHNDVDSKKLKMEKGLLGTEINAEGDMKIKADPGAGKVQGLLKGGEVKATIKVEVQTGDEPVDMSTSKSELKREKRVPSPDVIVLSDNEPSSPRMNGLTKIALKETNTEALMKSSPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQKETTIQKPAGSSGSAVATPPPLVRGPQSVAAGKPSLQTSSTRIPGTVIPPPLVRGGQQTSSKLGTQQNTQIVMPPLVRGAQQIHNIRQHSSTGPPPLLLAPRASVPSVQIQGQRIIQQGLIRVANVPNTSLLVNIPQASPTSIKGTSVTSAQANATPSSAASMGNAGESPASRQAAAKLALRKQLEKTLLEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQGKVSVAVSSREPYMCAQCKTDFTCRWREEKNGIIMCETCMTSNQKKALKAEHTNRLKAAFVKALQQEQEIEQRILQQTSAPVQTKSDPIVQHHSLKQTSSQMSRGPGAPRGVLHAFSQSPKLQNASSAAALGSRPGKHAERPVSKGSAAAWKKTPINTGGALPFVNPSLAVHKSSSAVDRQREYLLDMIPPRSIPQSATWK
SIO_010081: GATAD2A
subclass of: SO_0000673
so part of: GATAD2A
location: complement(join(326546..326676,327563..327746,328594..328883,329331..329610,330294..330461,331539..331670,333461..333550,334892..335023,335495..335624,344751..345013))
location: region:326546-345013:-1
so has part: feature:344751-345013:-1:exon
so has part: feature:335495-335624:-1:exon
so has part: feature:334892-335023:-1:exon
so has part: feature:333461-333550:-1:exon
so has part: feature:331539-331670:-1:exon
so has part: feature:330294-330461:-1:exon
so has part: feature:329331-329610:-1:exon
so has part: feature:328594-328883:-1:exon
so has part: feature:327563-327746:-1:exon
so has part: feature:326546-326676:-1:exon

XP_030365100.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:344751-345013:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:335495-335624:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:334892-335023:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:333461-333550:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:331539-331670:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:330294-330461:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:329331-329610:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:328594-328883:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:327563-327746:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:326546-326676:-1:exon

LOC115618080
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: LOC115618080
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 376835..381043
location: region:376835-381043:1
so has part: feature:376835-381043:1:exon
subclass of: SO_0000011

115618080
type: Gene
SIO_000068: ncbigene

position:376835:1
position: 376835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:381043:1
position: 381043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:376835-381043:1:exon

LOC115618080
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 2489341
nc RNA class: lncRNA
gene: LOC115618080
product: uncharacterized LOC115618080, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 long SRA reads, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_003994728.1
SIO_010081: LOC115618080
subclass of: SO_0000673
so part of: LOC115618080
location: join(376835..377482,378908..381043)
location: region:376835-381043:1
so has part: feature:376835-377482:1:exon
so has part: feature:378908-381043:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:376835-377482:1:exon

position:377482:1
position: 377482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:378908-381043:1:exon

position:378908:1
position: 378908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115618080
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 2489341
nc RNA class: lncRNA
gene: LOC115618080
product: uncharacterized LOC115618080, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 long SRA reads, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_003994727.1
SIO_010081: LOC115618080
subclass of: SO_0000673
so part of: LOC115618080
location: join(376846..377482,378911..381043)
location: region:376846-381043:1
so has part: feature:376846-377482:1:exon
so has part: feature:378911-381043:1:exon

position:376846:1
position: 376846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:376846-377482:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:378911-381043:1:exon

position:378911:1
position: 378911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MAU2
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: MAU2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(384255..397549)
location: region:384255-397549:-1
so has part: feature:384255-397549:-1:exon
subclass of: SO_0000010

115618079
type: Gene
SIO_000068: ncbigene

position:384255:-1
position: 384255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:397549:-1
position: 397549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:384255-397549:-1:exon

MAU2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: MAU2
product: MAU2 sister chromatid cohesion factor
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs, 317 long SRA reads, 5 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_030509243.2
SIO_010081: MAU2
subclass of: SO_0000673
so part of: MAU2
location: complement(join(384255..384885,385935..386062,387545..387635,388211..388322,388739..388816,389055..389104,389854..389937,390189..390254,390773..390850,391759..391862,392148..392238,392680..392826,393335..393490,393954..393981,394286..394380,395970..396065,396712..396777,396973..396990,397086..397549))
location: region:384255-397549:-1
so has part: feature:397086-397549:-1:exon
so has part: feature:396973-396990:-1:exon
so has part: feature:396712-396777:-1:exon
so has part: feature:395970-396065:-1:exon
so has part: feature:394286-394380:-1:exon
so has part: feature:393954-393981:-1:exon
so has part: feature:393335-393490:-1:exon
so has part: feature:392680-392826:-1:exon
so has part: feature:392148-392238:-1:exon
so has part: feature:391759-391862:-1:exon
so has part: feature:390773-390850:-1:exon
so has part: feature:390189-390254:-1:exon
so has part: feature:389854-389937:-1:exon
so has part: feature:389055-389104:-1:exon
so has part: feature:388739-388816:-1:exon
so has part: feature:388211-388322:-1:exon
so has part: feature:387545-387635:-1:exon
so has part: feature:385935-386062:-1:exon
so has part: feature:384255-384885:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:397086-397549:-1:exon

position:397086:-1
position: 397086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:396973-396990:-1:exon

position:396973:-1
position: 396973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:396990:-1
position: 396990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:396712-396777:-1:exon

position:396712:-1
position: 396712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:396777:-1
position: 396777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:395970-396065:-1:exon

position:395970:-1
position: 395970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:396065:-1
position: 396065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:394286-394380:-1:exon

position:394286:-1
position: 394286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:394380:-1
position: 394380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:393954-393981:-1:exon

position:393954:-1
position: 393954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:393981:-1
position: 393981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:393335-393490:-1:exon

position:393335:-1
position: 393335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:393490:-1
position: 393490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:392680-392826:-1:exon

position:392680:-1
position: 392680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:392826:-1
position: 392826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:392148-392238:-1:exon

position:392148:-1
position: 392148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:392238:-1
position: 392238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:391759-391862:-1:exon

position:391759:-1
position: 391759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:391862:-1
position: 391862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:390773-390850:-1:exon

position:390773:-1
position: 390773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:390850:-1
position: 390850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:390189-390254:-1:exon

position:390189:-1
position: 390189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:390254:-1
position: 390254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:389854-389937:-1:exon

position:389854:-1
position: 389854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:389937:-1
position: 389937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:389055-389104:-1:exon

position:389055:-1
position: 389055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:389104:-1
position: 389104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:388739-388816:-1:exon

position:388739:-1
position: 388739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:388816:-1
position: 388816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:388211-388322:-1:exon

position:388211:-1
position: 388211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:388322:-1
position: 388322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:387545-387635:-1:exon

position:387545:-1
position: 387545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:387635:-1
position: 387635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:385935-386062:-1:exon

position:385935:-1
position: 385935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:386062:-1
position: 386062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:384255-384885:-1:exon

position:384885:-1
position: 384885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MAU2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: MAU2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: MAU2 chromatid cohesion factor homolog
translation: MAAVAAGAAAPQQQPPPQQQPQPAAGGAAGSGEAGGGGGGGGGAAGGGGGGAGGGGGGGGGGAGPAPGSGSGGGGGAAGGESWYLALLGLAEHFRTSSPPKVRLCVHCLQAVLPRKPPARMEARTHLQLGSVLYHHTRNGDQARGHLEKAWLISQQIPQFEDVKFEAASLLSELYCQENSVDTAKPLLRKAIQISQQTPYWHCRLLFQLAQLHTLEKDLVSACDLLGVGAEYARVVGSEYTRALFLLSKGMLLLMERKLQEVHPLLTLCGQIVENWQGNPIQKESLRVFFLVLQVTHYLDAGQVKSVKPCLKQLQQCIQTISTLHDDEILPSNPADLFHWLPKEHMCVLVYLVTVMHSMQAGYLEKAQKYTDKALMQLEKLKMLDCSPILSSFQVILLEHIIMCRLVTGHKATALQEISQVCQLCQQSPRLFSNHAAQLHTLLGLYCISVNCMDNAEAQFTTALRLTTHQELWAFIVTNLASVYIREGNRHQELYSLLERINPDHNFPVSSHCLRAAAFYIRGLFSFFQGRYNEAKRFLRETLKMSNAEDLNRLTACSLVLLGHIFYVLGNHRESNNMVVPAMQLASKIPDMSVQLWSSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEHNLITWTDGPPPVQFQAQNGPTTSLASLL
SIO_010081: MAU2
subclass of: SO_0000673
so part of: MAU2
location: complement(join(384811..384885,385935..386062,387545..387635,388211..388322,388739..388816,389055..389104,389854..389937,390189..390254,390773..390850,391759..391862,392148..392238,392680..392826,393335..393490,393954..393981,394286..394380,395970..396065,396712..396777,396973..396990,397086..397535))
location: region:384811-397535:-1
so has part: feature:397086-397535:-1:exon
so has part: feature:396973-396990:-1:exon
so has part: feature:396712-396777:-1:exon
so has part: feature:395970-396065:-1:exon
so has part: feature:394286-394380:-1:exon
so has part: feature:393954-393981:-1:exon
so has part: feature:393335-393490:-1:exon
so has part: feature:392680-392826:-1:exon
so has part: feature:392148-392238:-1:exon
so has part: feature:391759-391862:-1:exon
so has part: feature:390773-390850:-1:exon
so has part: feature:390189-390254:-1:exon
so has part: feature:389854-389937:-1:exon
so has part: feature:389055-389104:-1:exon
so has part: feature:388739-388816:-1:exon
so has part: feature:388211-388322:-1:exon
so has part: feature:387545-387635:-1:exon
so has part: feature:385935-386062:-1:exon
so has part: feature:384811-384885:-1:exon

XP_030365103.2
type: Protein
SIO_000068: ncbiprotein

position:384811:-1
position: 384811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:397535:-1
position: 397535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:397086-397535:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:396973-396990:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:396712-396777:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:395970-396065:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:394286-394380:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:393954-393981:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:393335-393490:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:392680-392826:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:392148-392238:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:391759-391862:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:390773-390850:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:390189-390254:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:389854-389937:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:389055-389104:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:388739-388816:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:388211-388322:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:387545-387635:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:385935-386062:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:384811-384885:-1:exon

SUGP1
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: SUGP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 397764..415428
location: region:397764-415428:1
so has part: feature:397764-415428:1:exon
subclass of: SO_0000010

115618077
type: Gene
SIO_000068: ncbigene

position:397764:1
position: 397764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:415428:1
position: 415428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:397764-415428:1:exon

SUGP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: SUGP1
product: SURP and G-patch domain containing 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 3 ESTs, 132 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_030509235.1
SIO_010081: SUGP1
subclass of: SO_0000673
so part of: SUGP1
location: join(397764..397822,398065..398227,398800..398903,399303..399530,401238..401361,401909..402012,403621..403744,405435..405805,409920..410026,410687..410864,411118..411224,412017..412162,413630..413759,414300..415428)
location: region:397764-415428:1
so has part: feature:397764-397822:1:exon
so has part: feature:398065-398227:1:exon
so has part: feature:398800-398903:1:exon
so has part: feature:399303-399530:1:exon
so has part: feature:401238-401361:1:exon
so has part: feature:401909-402012:1:exon
so has part: feature:403621-403744:1:exon
so has part: feature:405435-405805:1:exon
so has part: feature:409920-410026:1:exon
so has part: feature:410687-410864:1:exon
so has part: feature:411118-411224:1:exon
so has part: feature:412017-412162:1:exon
so has part: feature:413630-413759:1:exon
so has part: feature:414300-415428:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:397764-397822:1:exon

position:397822:1
position: 397822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:398065-398227:1:exon

position:398065:1
position: 398065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:398227:1
position: 398227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:398800-398903:1:exon

position:398800:1
position: 398800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:398903:1
position: 398903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:399303-399530:1:exon

position:399303:1
position: 399303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:399530:1
position: 399530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:401238-401361:1:exon

position:401238:1
position: 401238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:401361:1
position: 401361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:401909-402012:1:exon

position:401909:1
position: 401909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:402012:1
position: 402012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:403621-403744:1:exon

position:403621:1
position: 403621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:403744:1
position: 403744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:405435-405805:1:exon

position:405435:1
position: 405435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:405805:1
position: 405805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:409920-410026:1:exon

position:409920:1
position: 409920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:410026:1
position: 410026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:410687-410864:1:exon

position:410687:1
position: 410687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:410864:1
position: 410864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:411118-411224:1:exon

position:411118:1
position: 411118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:411224:1
position: 411224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:412017-412162:1:exon

position:412017:1
position: 412017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:412162:1
position: 412162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:413630-413759:1:exon

position:413630:1
position: 413630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:413759:1
position: 413759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:414300-415428:1:exon

position:414300:1
position: 414300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SUGP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: SUGP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SURP and G-patch domain-containing protein 1
translation: MDNPRDAPGKASRWFGVAQSKSAKTNVNLLHQEELIAQKKREIEARLEQQARQKCPSIPLLGEDDGAENEACVSNKFVNDGSFLQQFLKLQQEKSSTETPPSSAQNSATASAANAGKKPGLFGKRAGQVLSSMLHQARSSSQPRQSPGTTRHSVFQSPDEDEEEDYEQWLEIKVLPPEDADTRALVEKLARFVAEGGPRLEKVAMESYKDKPAFLFLHDKNSREFLYYRKKVAEIRKEKQNFRPPSFQKVSPPDDEEIRNSAEKLARFIAAGGPEMEAIAVQNNRENHAFRFLYEPNSRGYKYYKQKLEEFRKARTSPASAPLPAEPSQKRKSSPETSPSLMCLPALPLPLPLPSSLPSPSASSSSTTASDQTAPTTPTTTKKKRKSRWGPEEEKVELPLPQLIQQLESPAPLTVQDLKGLGYEKGKPVGLVGVTELSEAQKKQLKEQQEMQQMYDMIMKHKQAMQEMQMMWEKAIQEHQYDYDSDEEVDSELGTWEHQLRRMEMDKTREWAEQLTQMGRGKHFIGDFLPPDELEKFMETFKALKEGREPDYSEYKEFKLTVENIGYQMLIKMGWKEGDGLGSDGQGIKNPVTKGTAAVDGAGFGIDRPAELTKEDDEYEAFRKRMMLAYRFRPNPLNNPRRPYY
SIO_010081: SUGP1
subclass of: SO_0000673
so part of: SUGP1
location: join(397798..397822,398065..398227,398800..398903,399303..399530,401238..401361,401909..402012,403621..403744,405435..405805,409920..410026,410687..410864,411118..411224,412017..412162,413630..413759,414300..414326)
location: region:397798-414326:1
so has part: feature:397798-397822:1:exon
so has part: feature:398065-398227:1:exon
so has part: feature:398800-398903:1:exon
so has part: feature:399303-399530:1:exon
so has part: feature:401238-401361:1:exon
so has part: feature:401909-402012:1:exon
so has part: feature:403621-403744:1:exon
so has part: feature:405435-405805:1:exon
so has part: feature:409920-410026:1:exon
so has part: feature:410687-410864:1:exon
so has part: feature:411118-411224:1:exon
so has part: feature:412017-412162:1:exon
so has part: feature:413630-413759:1:exon
so has part: feature:414300-414326:1:exon

XP_030365095.1
type: Protein
SIO_000068: ncbiprotein

position:397798:1
position: 397798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:414326:1
position: 414326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:397798-397822:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:398065-398227:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:398800-398903:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:399303-399530:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:401238-401361:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:401909-402012:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:403621-403744:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:405435-405805:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:409920-410026:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:410687-410864:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:411118-411224:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:412017-412162:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:413630-413759:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:414300-414326:1:exon

TM6SF2
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: TM6SF2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 417418..422512
location: region:417418-422512:1
so has part: feature:417418-422512:1:exon
subclass of: SO_0000010

115618083
type: Gene
SIO_000068: ncbigene

position:417418:1
position: 417418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:422512:1
position: 422512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:417418-422512:1:exon

TM6SF2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: TM6SF2
product: transmembrane 6 superfamily member 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 long SRA reads, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_030509246.1
SIO_010081: TM6SF2
subclass of: SO_0000673
so part of: TM6SF2
location: join(417418..417535,419966..420072,420183..420280,420429..420532,420677..420759,420933..421057,421181..421282,421368..421460,421539..421658,421965..422512)
location: region:417418-422512:1
so has part: feature:417418-417535:1:exon
so has part: feature:419966-420072:1:exon
so has part: feature:420183-420280:1:exon
so has part: feature:420429-420532:1:exon
so has part: feature:420677-420759:1:exon
so has part: feature:420933-421057:1:exon
so has part: feature:421181-421282:1:exon
so has part: feature:421368-421460:1:exon
so has part: feature:421539-421658:1:exon
so has part: feature:421965-422512:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:417418-417535:1:exon

position:417535:1
position: 417535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:419966-420072:1:exon

position:419966:1
position: 419966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:420072:1
position: 420072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:420183-420280:1:exon

position:420183:1
position: 420183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:420280:1
position: 420280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:420429-420532:1:exon

position:420429:1
position: 420429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:420532:1
position: 420532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:420677-420759:1:exon

position:420677:1
position: 420677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:420759:1
position: 420759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:420933-421057:1:exon

position:420933:1
position: 420933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:421057:1
position: 421057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:421181-421282:1:exon

position:421181:1
position: 421181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:421282:1
position: 421282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:421368-421460:1:exon

position:421368:1
position: 421368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:421460:1
position: 421460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:421539-421658:1:exon

position:421539:1
position: 421539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:421658:1
position: 421658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:421965-422512:1:exon

position:421965:1
position: 421965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TM6SF2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: TM6SF2
product: transmembrane 6 superfamily member 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 long SRA reads, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_030509247.1
SIO_010081: TM6SF2
subclass of: SO_0000673
so part of: TM6SF2
location: join(417418..417535,419969..420072,420183..420280,420429..420532,420677..420759,420933..421057,421181..421282,421368..421460,421539..421658,421965..422512)
location: region:417418-422512:1
so has part: feature:417418-417535:1:exon
so has part: feature:419969-420072:1:exon
so has part: feature:420183-420280:1:exon
so has part: feature:420429-420532:1:exon
so has part: feature:420677-420759:1:exon
so has part: feature:420933-421057:1:exon
so has part: feature:421181-421282:1:exon
so has part: feature:421368-421460:1:exon
so has part: feature:421539-421658:1:exon
so has part: feature:421965-422512:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:417418-417535:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:419969-420072:1:exon

position:419969:1
position: 419969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:420183-420280:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:420429-420532:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:420677-420759:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:420933-421057:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:421181-421282:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:421368-421460:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:421539-421658:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:421965-422512:1:exon

TM6SF2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: TM6SF2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transmembrane 6 superfamily member 2 isoform X1
translation: MQLPAVPGVLAPSLLAIPVAFGINGAAALAESPLVLILTGVLVSASLFSIIVFVSGGNHFQDPLFCVFVVFSFTSIVDLIISLEEDGYISGFMEIYVREGEPYLRTAHGIMICYWDGIIHYGLYLAMIAAIGQRRNYRNLGLFWLGSLMMSIVVFLLGNLIGKYSSDLSPAFLFNLPYILIPVWAGMRLFQQPKALPCLSPEKVAEEQRKRLYQRPQDMGLVVVLLLIAAFTFFRGMVVLDCPADSCFEYIYQHEPYLRDPVAYPKVQMLIYMFYVLPFFCLCIYGLVLPGCSWLPDWSLVFAGAVAQAQFSHVGSSLHGRTPFPYQTPEDVWWSFLLTNVLYALGPQLLALRCLRGPAFFLPTTSASLLVVKKHQ
SIO_010081: TM6SF2
subclass of: SO_0000673
so part of: TM6SF2
location: join(417444..417535,419966..420072,420183..420280,420429..420532,420677..420759,420933..421057,421181..421282,421368..421460,421539..421658,421965..422171)
location: region:417444-422171:1
so has part: feature:417444-417535:1:exon
so has part: feature:419966-420072:1:exon
so has part: feature:420183-420280:1:exon
so has part: feature:420429-420532:1:exon
so has part: feature:420677-420759:1:exon
so has part: feature:420933-421057:1:exon
so has part: feature:421181-421282:1:exon
so has part: feature:421368-421460:1:exon
so has part: feature:421539-421658:1:exon
so has part: feature:421965-422171:1:exon

XP_030365106.1
type: Protein
SIO_000068: ncbiprotein

position:417444:1
position: 417444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:422171:1
position: 422171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:417444-417535:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:419966-420072:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:420183-420280:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:420429-420532:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:420677-420759:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:420933-421057:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:421181-421282:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:421368-421460:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:421539-421658:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:421965-422171:1:exon

TM6SF2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: TM6SF2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transmembrane 6 superfamily member 2 isoform X2
translation: MQLPAVPGVLAPSLLAIPVAFGINGAAALADPLVLILTGVLVSASLFSIIVFVSGGNHFQDPLFCVFVVFSFTSIVDLIISLEEDGYISGFMEIYVREGEPYLRTAHGIMICYWDGIIHYGLYLAMIAAIGQRRNYRNLGLFWLGSLMMSIVVFLLGNLIGKYSSDLSPAFLFNLPYILIPVWAGMRLFQQPKALPCLSPEKVAEEQRKRLYQRPQDMGLVVVLLLIAAFTFFRGMVVLDCPADSCFEYIYQHEPYLRDPVAYPKVQMLIYMFYVLPFFCLCIYGLVLPGCSWLPDWSLVFAGAVAQAQFSHVGSSLHGRTPFPYQTPEDVWWSFLLTNVLYALGPQLLALRCLRGPAFFLPTTSASLLVVKKHQ
SIO_010081: TM6SF2
subclass of: SO_0000673
so part of: TM6SF2
location: join(417444..417535,419969..420072,420183..420280,420429..420532,420677..420759,420933..421057,421181..421282,421368..421460,421539..421658,421965..422171)
location: region:417444-422171:1
so has part: feature:417444-417535:1:exon
so has part: feature:419969-420072:1:exon
so has part: feature:420183-420280:1:exon
so has part: feature:420429-420532:1:exon
so has part: feature:420677-420759:1:exon
so has part: feature:420933-421057:1:exon
so has part: feature:421181-421282:1:exon
so has part: feature:421368-421460:1:exon
so has part: feature:421539-421658:1:exon
so has part: feature:421965-422171:1:exon

XP_030365107.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:417444-417535:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:419969-420072:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:420183-420280:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:420429-420532:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:420677-420759:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:420933-421057:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:421181-421282:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:421368-421460:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:421539-421658:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:421965-422171:1:exon

HAPLN4
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: HAPLN4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 422955..427370
location: region:422955-427370:1
so has part: feature:422955-427370:1:exon
subclass of: SO_0000010

115618081
type: Gene
SIO_000068: ncbigene

position:422955:1
position: 422955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:427370:1
position: 427370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:422955-427370:1:exon

HAPLN4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: HAPLN4
product: hyaluronan and proteoglycan link protein 4, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 long SRA reads, 22 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030509245.2
SIO_010081: HAPLN4
subclass of: SO_0000673
so part of: HAPLN4
location: join(422955..423053,423946..424063,424367..424729,425397..425699,426302..427370)
location: region:422955-427370:1
so has part: feature:422955-423053:1:exon
so has part: feature:423946-424063:1:exon
so has part: feature:424367-424729:1:exon
so has part: feature:425397-425699:1:exon
so has part: feature:426302-427370:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:422955-423053:1:exon

position:423053:1
position: 423053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:423946-424063:1:exon

position:423946:1
position: 423946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:424063:1
position: 424063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:424367-424729:1:exon

position:424367:1
position: 424367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:424729:1
position: 424729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:425397-425699:1:exon

position:425397:1
position: 425397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:425699:1
position: 425699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:426302-427370:1:exon

position:426302:1
position: 426302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HAPLN4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: HAPLN4
product: hyaluronan and proteoglycan link protein 4, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030509244.2
SIO_010081: HAPLN4
subclass of: SO_0000673
so part of: HAPLN4
location: join(423662..423798,423946..424063,424367..424729,425397..425699,426302..427362)
location: region:423662-427362:1
so has part: feature:423662-423798:1:exon
so has part: feature:423946-424063:1:exon
so has part: feature:424367-424729:1:exon
so has part: feature:425397-425699:1:exon
so has part: feature:426302-427362:1:exon

position:423662:1
position: 423662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:427362:1
position: 427362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:423662-423798:1:exon

position:423798:1
position: 423798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:423946-424063:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:424367-424729:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:425397-425699:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:426302-427362:1:exon

HAPLN4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: HAPLN4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: hyaluronan and proteoglycan link protein 4 isoform X1
translation: MLRAGPSTAGHPPPLGMCPRSPWAAVPAALLLLAGVLASDTVLSARGRKKVVHVMEGDSGAVVVQTAPGKVVTHRGGTIILPCRYHYDVSAHDPAEIRLKWTKVTEPMAFVDVFVALGKARRAFGSYRGRTALQEDGFGDASLIIRNVTLQDYGRYECEVTNELEDDAGMVKLDLEGVIFPYHPRLGRYTLNFHEAQQACLEQDGILASHDQLHQAWLEGMDWCNAGWLEDGSVQYPISRPREECGRKDTPVGVRNYGYRHKESEHYDAFCFTSNLNGKVYFLKTYRKLSYAEAVQACKNNGAAVAKVGQLYAAWKIQLLDRCEAGWLEDGSIRYPIVNPRARCGGREPGVRNLGFPDKKYKLFGVYCFKKAGEAAPEKMPGGGGHPNRV
SIO_010081: HAPLN4
subclass of: SO_0000673
so part of: HAPLN4
location: join(423751..423798,423946..424063,424367..424729,425397..425699,426302..426642)
location: region:423751-426642:1
so has part: feature:423751-423798:1:exon
so has part: feature:423946-424063:1:exon
so has part: feature:424367-424729:1:exon
so has part: feature:425397-425699:1:exon
so has part: feature:426302-426642:1:exon

XP_030365104.1
type: Protein
SIO_000068: ncbiprotein

position:423751:1
position: 423751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:426642:1
position: 426642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:423751-423798:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:423946-424063:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:424367-424729:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:425397-425699:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:426302-426642:1:exon

HAPLN4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: HAPLN4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: hyaluronan and proteoglycan link protein 4 isoform X2
translation: MCPRSPWAAVPAALLLLAGVLASDTVLSARGRKKVVHVMEGDSGAVVVQTAPGKVVTHRGGTIILPCRYHYDVSAHDPAEIRLKWTKVTEPMAFVDVFVALGKARRAFGSYRGRTALQEDGFGDASLIIRNVTLQDYGRYECEVTNELEDDAGMVKLDLEGVIFPYHPRLGRYTLNFHEAQQACLEQDGILASHDQLHQAWLEGMDWCNAGWLEDGSVQYPISRPREECGRKDTPVGVRNYGYRHKESEHYDAFCFTSNLNGKVYFLKTYRKLSYAEAVQACKNNGAAVAKVGQLYAAWKIQLLDRCEAGWLEDGSIRYPIVNPRARCGGREPGVRNLGFPDKKYKLFGVYCFKKAGEAAPEKMPGGGGHPNRV
SIO_010081: HAPLN4
subclass of: SO_0000673
so part of: HAPLN4
location: join(423946..424063,424367..424729,425397..425699,426302..426642)
location: region:423946-426642:1
so has part: feature:423946-424063:1:exon
so has part: feature:424367-424729:1:exon
so has part: feature:425397-425699:1:exon
so has part: feature:426302-426642:1:exon

XP_030365105.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:423946-424063:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:424367-424729:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:425397-425699:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:426302-426642:1:exon

NCAN
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: NCAN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(428104..440833)
location: region:428104-440833:-1
so has part: feature:428104-440833:-1:exon
subclass of: SO_0000010

115618084
type: Gene
SIO_000068: ncbigene

position:428104:-1
position: 428104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:440833:-1
position: 440833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:428104-440833:-1:exon

NCAN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: NCAN
product: neurocan
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 671 long SRA reads, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030509248.1
SIO_010081: NCAN
subclass of: SO_0000673
so part of: NCAN
location: complement(join(428104..428920,429028..429210,429755..429899,429985..430067,430157..430315,430463..430576,430721..430837,431316..432438,432524..433372,433700..433993,434535..434662,434737..434911,435261..435662,436662..436741,440686..440833))
location: region:428104-440833:-1
so has part: feature:440686-440833:-1:exon
so has part: feature:436662-436741:-1:exon
so has part: feature:435261-435662:-1:exon
so has part: feature:434737-434911:-1:exon
so has part: feature:434535-434662:-1:exon
so has part: feature:433700-433993:-1:exon
so has part: feature:432524-433372:-1:exon
so has part: feature:431316-432438:-1:exon
so has part: feature:430721-430837:-1:exon
so has part: feature:430463-430576:-1:exon
so has part: feature:430157-430315:-1:exon
so has part: feature:429985-430067:-1:exon
so has part: feature:429755-429899:-1:exon
so has part: feature:429028-429210:-1:exon
so has part: feature:428104-428920:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:440686-440833:-1:exon

position:440686:-1
position: 440686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:436662-436741:-1:exon

position:436662:-1
position: 436662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:436741:-1
position: 436741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:435261-435662:-1:exon

position:435261:-1
position: 435261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:435662:-1
position: 435662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:434737-434911:-1:exon

position:434737:-1
position: 434737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:434911:-1
position: 434911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:434535-434662:-1:exon

position:434535:-1
position: 434535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:434662:-1
position: 434662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:433700-433993:-1:exon

position:433700:-1
position: 433700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:433993:-1
position: 433993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:432524-433372:-1:exon

position:432524:-1
position: 432524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:433372:-1
position: 433372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:431316-432438:-1:exon

position:431316:-1
position: 431316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:432438:-1
position: 432438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:430721-430837:-1:exon

position:430721:-1
position: 430721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:430837:-1
position: 430837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:430463-430576:-1:exon

position:430463:-1
position: 430463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:430576:-1
position: 430576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:430157-430315:-1:exon

position:430157:-1
position: 430157
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:430315:-1
position: 430315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:429985-430067:-1:exon

position:429985:-1
position: 429985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:430067:-1
position: 430067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:429755-429899:-1:exon

position:429755:-1
position: 429755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:429899:-1
position: 429899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:429028-429210:-1:exon

position:429028:-1
position: 429028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:429210:-1
position: 429210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:428104-428920:-1:exon

position:428920:-1
position: 428920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NCAN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: NCAN
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: neurocan core protein
translation: MVHVMGDAGCWLLLGLSLLPIAVLGSQDDGKVIHINRVQHEAVRVGLGEPVALPCLFLLHPSASLGPNEPPDPPRVKWSKVRSATGQREDVPILVAKDNTVKVVKAYEGRVSLPSYPRDRYNATLVLRAARASDAGLYRCEVVAGIEDEQDLLPLEVTGVVFHYRPAGERYALTFPAARRACLDNSAVIASPQHLQAAFEDGYDNCDAGWLADQSVRYPITLSRPGCYGDRNSLPGVRSYGHREPGEEYDVYCYARELRGTVFYAAAPGRFTWQGARRHCQRRGASLATTGQLYVAWREGLDQCDPGWLADGSVRYPIRLPRRKCGGDASGVRTLYQFPNRTGFPPAASRFDAYCYKAHAAEGQKEPEESALPAPNPLGSDNVLVEHGEDVGMSGDIRDTPHNRHSLLPQPGPAGLGEDEDEQLQPASSSPMAQRGDLPSAAPTQAPGADGLGDGTSLPPTTASSPAWPHEDEALNVVDQAPVSSQQDLASTSPALPVQEDPEEPLATLLPQSQSPAQEHVTGSPPALPGMGTEPGMAAETPSTPLASSRTPRQSSYPGLNGRYFQLQRQSRDPMAMAGDPTVAGDPMRTVTQAPVLALEVKEAAANAVEMWSIPHASTESARWEGTYSPSNAVEEEISPKLMAPAAAPVSPSPQAPAHRDSLWWSPRTPEEPARTLPPPSLSSAAPHGAPGHQDITAAGAQPRVPSARGDSPRPPANATEDFSGDAMSQEDGGSVPPQPPLPPALLVAESPEVALWHRSDGSNGSGAPGDGSLERQRKAVTFLHPGGPSMGDPTTPGPTEVAAPQPQGGLSPTAPHRPPELPTQYRNAGKGSVMSTSGAVVSPPVQDVPSEVTPWAGTEWPVLEPVAEDGSTGFAPGPTSHAAPGLGGAEHLLLPPPGPRQHPTSPGPPGVPSREDAPTAPGEEDASGEVKREEPPAPLGSTTRSPWPSPTAPHPWEPEAPESPSAGPQFEPSMAAELEGAPLLDAGSGSGEEPALEERELLAWAGTGNTSQHAPSDPCQNNPCLHGGTCRANGTVCGCSCAPGFTGENCEIDIDDCLSSPCQNGGTCIDEVNSFVCLCLPSYGGSRCEKDTEGCDHNWHKFQGHCYRYFSRRRSWEDAERDCRRRAGHLTSIHSREEHSFINGFGHENTWIGLNDRIVEQDFQWTDNTGLQYENWRENQPDNFFAGGEDCVVLVSHEIGKWNDVPCNYNLPYICKKGTVLCGPPPEVENAFTVGKKKEKYSIHSSVRYQCEEGFTQRHVPTIKCHSTGKWDRPKILCTKRGRTERGGTTTTGTATSTTSTTTTNPARSGENTASTSGWTGWRRATTSRAAGQRSTKVPDGTW
SIO_010081: NCAN
subclass of: SO_0000673
so part of: NCAN
location: complement(join(428730..428920,429028..429210,429755..429899,429985..430067,430157..430315,430463..430576,430721..430837,431316..432438,432524..433372,433700..433993,434535..434662,434737..434911,435261..435662,436662..436734))
location: region:428730-436734:-1
so has part: feature:436662-436734:-1:exon
so has part: feature:435261-435662:-1:exon
so has part: feature:434737-434911:-1:exon
so has part: feature:434535-434662:-1:exon
so has part: feature:433700-433993:-1:exon
so has part: feature:432524-433372:-1:exon
so has part: feature:431316-432438:-1:exon
so has part: feature:430721-430837:-1:exon
so has part: feature:430463-430576:-1:exon
so has part: feature:430157-430315:-1:exon
so has part: feature:429985-430067:-1:exon
so has part: feature:429755-429899:-1:exon
so has part: feature:429028-429210:-1:exon
so has part: feature:428730-428920:-1:exon

XP_030365108.1
type: Protein
SIO_000068: ncbiprotein

position:428730:-1
position: 428730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:436734:-1
position: 436734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:436662-436734:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:435261-435662:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:434737-434911:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:434535-434662:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:433700-433993:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:432524-433372:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:431316-432438:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:430721-430837:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:430463-430576:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:430157-430315:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:429985-430067:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:429755-429899:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:429028-429210:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:428730-428920:-1:exon

NR2C2AP
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: NR2C2AP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 448265..450101
location: region:448265-450101:1
so has part: feature:448265-450101:1:exon
subclass of: SO_0000010

115618087
type: Gene
SIO_000068: ncbigene

position:448265:1
position: 448265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:450101:1
position: 450101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:448265-450101:1:exon

NR2C2AP
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: NR2C2AP
product: nuclear receptor 2C2 associated protein, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 54 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_030509259.1
SIO_010081: NR2C2AP
subclass of: SO_0000673
so part of: NR2C2AP
location: join(448265..448743,448864..448954,449447..449514,449767..450101)
location: region:448265-450101:1
so has part: feature:448265-448743:1:exon
so has part: feature:448864-448954:1:exon
so has part: feature:449447-449514:1:exon
so has part: feature:449767-450101:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:448265-448743:1:exon

position:448743:1
position: 448743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:448864-448954:1:exon

position:448864:1
position: 448864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:448954:1
position: 448954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:449447-449514:1:exon

position:449447:1
position: 449447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:449514:1
position: 449514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:449767-450101:1:exon

position:449767:1
position: 449767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NR2C2AP
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: NR2C2AP
product: nuclear receptor 2C2 associated protein, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 54 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_030509257.1
SIO_010081: NR2C2AP
subclass of: SO_0000673
so part of: NR2C2AP
location: join(448289..448743,448864..448954,449059..449191,449447..449514,449767..450101)
location: region:448289-450101:1
so has part: feature:448289-448743:1:exon
so has part: feature:448864-448954:1:exon
so has part: feature:449059-449191:1:exon
so has part: feature:449447-449514:1:exon
so has part: feature:449767-450101:1:exon

position:448289:1
position: 448289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:448289-448743:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:448864-448954:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:449059-449191:1:exon

position:449059:1
position: 449059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:449191:1
position: 449191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:449447-449514:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:449767-450101:1:exon

NR2C2AP
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: NR2C2AP
product: nuclear receptor 2C2 associated protein, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 54 long SRA reads, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_030509258.1
SIO_010081: NR2C2AP
subclass of: SO_0000673
so part of: NR2C2AP
location: join(448304..448743,448864..448954,449086..449191,449447..449514,449767..450101)
location: region:448304-450101:1
so has part: feature:448304-448743:1:exon
so has part: feature:448864-448954:1:exon
so has part: feature:449086-449191:1:exon
so has part: feature:449447-449514:1:exon
so has part: feature:449767-450101:1:exon

position:448304:1
position: 448304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:448304-448743:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:448864-448954:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:449086-449191:1:exon

position:449086:1
position: 449086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:449447-449514:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:449767-450101:1:exon

NR2C2AP
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: NR2C2AP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nuclear receptor 2C2-associated protein isoform X3
translation: MLLRDPRCCPECPQCCLGVPSASHGSLLLLRGPQCCPDASNAARYPQHCLEVPNATKGVPSAAQDVPNADQGSPVLLGVPIFVPRCLSAGSNARGAPDLLRHGHTGELRAQPGCEAVWEEAHVRCERGDMLELRPGCREGEELERISTLYPEDSNAMQRFQVEETVLDKLKITFENSTDFFGRIVVYHLGVLGERL
SIO_010081: NR2C2AP
subclass of: SO_0000673
so part of: NR2C2AP
location: join(448429..448743,448864..448954,449447..449514,449767..449883)
location: region:448429-449883:1
so has part: feature:448429-448743:1:exon
so has part: feature:448864-448954:1:exon
so has part: feature:449447-449514:1:exon
so has part: feature:449767-449883:1:exon

XP_030365119.1
type: Protein
SIO_000068: ncbiprotein

position:448429:1
position: 448429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:449883:1
position: 449883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:448429-448743:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:448864-448954:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:449447-449514:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:449767-449883:1:exon

NR2C2AP
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: NR2C2AP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nuclear receptor 2C2-associated protein isoform X1
translation: MGLYCFSGVPSAAQMPLMLLGIPSTAWRSPMLLRGSPVLLRMSPMLTRGPQCCWGSPFSSLAVSLQAAMPVEPLICSDTATRVSSVLNRDVKQFGKKHMFDASEETCWNSDQSPWCHSCPQGTCQWVILDFPRCVKISQLHIQFQGGFSSRLCTLEGCREGEELERISTLYPEDSNAMQRFQVEETVLDKLKITFENSTDFFGRIVVYHLGVLGERL
SIO_010081: NR2C2AP
subclass of: SO_0000673
so part of: NR2C2AP
location: join(448499..448743,448864..448954,449059..449191,449447..449514,449767..449883)
location: region:448499-449883:1
so has part: feature:448499-448743:1:exon
so has part: feature:448864-448954:1:exon
so has part: feature:449059-449191:1:exon
so has part: feature:449447-449514:1:exon
so has part: feature:449767-449883:1:exon

XP_030365117.1
type: Protein
SIO_000068: ncbiprotein

position:448499:1
position: 448499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:448499-448743:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:448864-448954:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:449059-449191:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:449447-449514:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:449767-449883:1:exon

NR2C2AP
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: NR2C2AP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nuclear receptor 2C2-associated protein isoform X2
translation: MGLYCFSGVPSAAQMPLMLLGIPSTAWRSPMLLRGSPVLLRMSPMLTRGPQCCWGSPFSSLAVSLQAAMPVEPLICSDTATRVSSVLNRDVKQFGKKHMFDASEETCWNSDQGTCQWVILDFPRCVKISQLHIQFQGGFSSRLCTLEGCREGEELERISTLYPEDSNAMQRFQVEETVLDKLKITFENSTDFFGRIVVYHLGVLGERL
SIO_010081: NR2C2AP
subclass of: SO_0000673
so part of: NR2C2AP
location: join(448499..448743,448864..448954,449086..449191,449447..449514,449767..449883)
location: region:448499-449883:1
so has part: feature:448499-448743:1:exon
so has part: feature:448864-448954:1:exon
so has part: feature:449086-449191:1:exon
so has part: feature:449447-449514:1:exon
so has part: feature:449767-449883:1:exon

XP_030365118.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:448499-448743:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:448864-448954:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:449086-449191:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:449447-449514:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:449767-449883:1:exon

RFXANK
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: RFXANK
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(450585..455265)
location: region:450585-455265:-1
so has part: feature:450585-455265:-1:exon
subclass of: SO_0000010

115618085
type: Gene
SIO_000068: ncbigene

position:450585:-1
position: 450585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:455265:-1
position: 455265
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:450585-455265:-1:exon

RFXANK
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: RFXANK
product: regulatory factor X associated ankyrin containing protein, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 136 long SRA reads, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_030509253.1
SIO_010081: RFXANK
subclass of: SO_0000673
so part of: RFXANK
location: complement(join(450585..450960,451293..451373,451517..451583,451957..452082,453032..453132,453308..453373,453465..453545,454226..454294,454508..454722,455074..455265))
location: region:450585-455265:-1
so has part: feature:455074-455265:-1:exon
so has part: feature:454508-454722:-1:exon
so has part: feature:454226-454294:-1:exon
so has part: feature:453465-453545:-1:exon
so has part: feature:453308-453373:-1:exon
so has part: feature:453032-453132:-1:exon
so has part: feature:451957-452082:-1:exon
so has part: feature:451517-451583:-1:exon
so has part: feature:451293-451373:-1:exon
so has part: feature:450585-450960:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:455074-455265:-1:exon

position:455074:-1
position: 455074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:454508-454722:-1:exon

position:454508:-1
position: 454508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:454722:-1
position: 454722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:454226-454294:-1:exon

position:454226:-1
position: 454226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:454294:-1
position: 454294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:453465-453545:-1:exon

position:453465:-1
position: 453465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:453545:-1
position: 453545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:453308-453373:-1:exon

position:453308:-1
position: 453308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:453373:-1
position: 453373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:453032-453132:-1:exon

position:453032:-1
position: 453032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:453132:-1
position: 453132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:451957-452082:-1:exon

position:451957:-1
position: 451957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:452082:-1
position: 452082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:451517-451583:-1:exon

position:451517:-1
position: 451517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:451583:-1
position: 451583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:451293-451373:-1:exon

position:451293:-1
position: 451293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:451373:-1
position: 451373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:450585-450960:-1:exon

position:450960:-1
position: 450960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RFXANK
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: RFXANK
product: regulatory factor X associated ankyrin containing protein, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 48 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_030509250.2
SIO_010081: RFXANK
subclass of: SO_0000673
so part of: RFXANK
location: complement(join(450585..450952,451293..451373,451517..451583,451957..452082,453032..453132,453308..453373,453465..453545,454226..454294,454508..454722,455074..455256))
location: region:450585-455256:-1
so has part: feature:455074-455256:-1:exon
so has part: feature:454508-454722:-1:exon
so has part: feature:454226-454294:-1:exon
so has part: feature:453465-453545:-1:exon
so has part: feature:453308-453373:-1:exon
so has part: feature:453032-453132:-1:exon
so has part: feature:451957-452082:-1:exon
so has part: feature:451517-451583:-1:exon
so has part: feature:451293-451373:-1:exon
so has part: feature:450585-450952:-1:exon

position:455256:-1
position: 455256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:455074-455256:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:454508-454722:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:454226-454294:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:453465-453545:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:453308-453373:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:453032-453132:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:451957-452082:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:451517-451583:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:451293-451373:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:450585-450952:-1:exon

position:450952:-1
position: 450952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RFXANK
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: RFXANK
product: regulatory factor X associated ankyrin containing protein, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 44 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509252.1
SIO_010081: RFXANK
subclass of: SO_0000673
so part of: RFXANK
location: complement(join(450585..450952,451293..451373,451517..451583,451957..452082,453032..453132,453308..453373,453465..453545,454508..454722,455074..455158))
location: region:450585-455158:-1
so has part: feature:455074-455158:-1:exon
so has part: feature:454508-454722:-1:exon
so has part: feature:453465-453545:-1:exon
so has part: feature:453308-453373:-1:exon
so has part: feature:453032-453132:-1:exon
so has part: feature:451957-452082:-1:exon
so has part: feature:451517-451583:-1:exon
so has part: feature:451293-451373:-1:exon
so has part: feature:450585-450952:-1:exon

position:455158:-1
position: 455158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:455074-455158:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:454508-454722:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:453465-453545:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:453308-453373:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:453032-453132:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:451957-452082:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:451517-451583:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:451293-451373:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:450585-450952:-1:exon

RFXANK
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: RFXANK
product: regulatory factor X associated ankyrin containing protein, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 106 long SRA reads, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509255.1
SIO_010081: RFXANK
subclass of: SO_0000673
so part of: RFXANK
location: complement(join(450585..450960,451293..451373,451517..451583,451957..452082,453032..453132,453308..453373,453465..453545,454508..454722,455074..455158))
location: region:450585-455158:-1
so has part: feature:455074-455158:-1:exon
so has part: feature:454508-454722:-1:exon
so has part: feature:453465-453545:-1:exon
so has part: feature:453308-453373:-1:exon
so has part: feature:453032-453132:-1:exon
so has part: feature:451957-452082:-1:exon
so has part: feature:451517-451583:-1:exon
so has part: feature:451293-451373:-1:exon
so has part: feature:450585-450960:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:455074-455158:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:454508-454722:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:453465-453545:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:453308-453373:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:453032-453132:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:451957-452082:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:451517-451583:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:451293-451373:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:450585-450960:-1:exon

RFXANK
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: RFXANK
product: regulatory factor X associated ankyrin containing protein, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 44 long SRA reads, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_030509251.1
SIO_010081: RFXANK
subclass of: SO_0000673
so part of: RFXANK
location: complement(join(450585..450952,451293..451373,451517..451583,451957..452082,453032..453132,453308..453373,453465..453545,454226..454294,454508..455112))
location: region:450585-455112:-1
so has part: feature:454508-455112:-1:exon
so has part: feature:454226-454294:-1:exon
so has part: feature:453465-453545:-1:exon
so has part: feature:453308-453373:-1:exon
so has part: feature:453032-453132:-1:exon
so has part: feature:451957-452082:-1:exon
so has part: feature:451517-451583:-1:exon
so has part: feature:451293-451373:-1:exon
so has part: feature:450585-450952:-1:exon

position:455112:-1
position: 455112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:454508-455112:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:454226-454294:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:453465-453545:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:453308-453373:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:453032-453132:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:451957-452082:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:451517-451583:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:451293-451373:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:450585-450952:-1:exon

RFXANK
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: RFXANK
product: regulatory factor X associated ankyrin containing protein, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 130 long SRA reads, 12 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_030509254.1
SIO_010081: RFXANK
subclass of: SO_0000673
so part of: RFXANK
location: complement(join(450585..450960,451293..451373,451517..451583,451957..452082,453032..453132,453308..453373,453465..453545,454226..454294,454508..455112))
location: region:450585-455112:-1
so has part: feature:454508-455112:-1:exon
so has part: feature:454226-454294:-1:exon
so has part: feature:453465-453545:-1:exon
so has part: feature:453308-453373:-1:exon
so has part: feature:453032-453132:-1:exon
so has part: feature:451957-452082:-1:exon
so has part: feature:451517-451583:-1:exon
so has part: feature:451293-451373:-1:exon
so has part: feature:450585-450960:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:454508-455112:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:454226-454294:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:453465-453545:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:453308-453373:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:453032-453132:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:451957-452082:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:451517-451583:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:451293-451373:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:450585-450960:-1:exon

RFXANK
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: RFXANK
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DNA-binding protein RFXANK isoform X2
translation: MEGEGAAARPVKTPPNAGAAQELSKGGENGAEGAAGAEELGASRDTGDSGVPPARLRPDHDMARLGHGDGFPLKHSNTLTNRQRGNEISALPATLDTLSIHQLAAQGELSQLKEHLRKGENLVNKPDERGFTPLIWAAAFGEIETVRHLLEWGADPHALAKERESALSLASMGGYTDIVTMLLERNVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTEEADSGYTPMDLAVALGHKKGYGKPHPQAISEQGAGMTQLLPLQLQHFSCPAKGSPLGTPWPHPAVLEWAVA
SIO_010081: RFXANK
subclass of: SO_0000673
so part of: RFXANK
location: complement(join(450795..450952,451293..451373,451517..451583,451957..452082,453032..453132,453308..453373,453465..453545,454508..454715))
location: region:450795-454715:-1
so has part: feature:454508-454715:-1:exon
so has part: feature:453465-453545:-1:exon
so has part: feature:453308-453373:-1:exon
so has part: feature:453032-453132:-1:exon
so has part: feature:451957-452082:-1:exon
so has part: feature:451517-451583:-1:exon
so has part: feature:451293-451373:-1:exon
so has part: feature:450795-450952:-1:exon

XP_030365112.1
type: Protein
SIO_000068: ncbiprotein

position:450795:-1
position: 450795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:454715:-1
position: 454715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:454508-454715:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:453465-453545:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:453308-453373:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:453032-453132:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:451957-452082:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:451517-451583:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:451293-451373:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:450795-450952:-1:exon

RFXANK
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: RFXANK
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DNA-binding protein RFXANK isoform X1
translation: MEGEGAAARPVKTPPNAGAAQELSKGGENGAEGAAGAEELGASRDTGDSGVPPARLRPDHDMARLGHGDGGADALTKPSMDRQQSTELSGLDSFPLKHSNTLTNRQRGNEISALPATLDTLSIHQLAAQGELSQLKEHLRKGENLVNKPDERGFTPLIWAAAFGEIETVRHLLEWGADPHALAKERESALSLASMGGYTDIVTMLLERNVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTEEADSGYTPMDLAVALGHKKGYGKPHPQAISEQGAGMTQLLPLQLQHFSCPAKGSPLGTPWPHPAVLEWAVA
SIO_010081: RFXANK
subclass of: SO_0000673
so part of: RFXANK
location: complement(join(450795..450952,451293..451373,451517..451583,451957..452082,453032..453132,453308..453373,453465..453545,454226..454294,454508..454715))
location: region:450795-454715:-1
so has part: feature:454508-454715:-1:exon
so has part: feature:454226-454294:-1:exon
so has part: feature:453465-453545:-1:exon
so has part: feature:453308-453373:-1:exon
so has part: feature:453032-453132:-1:exon
so has part: feature:451957-452082:-1:exon
so has part: feature:451517-451583:-1:exon
so has part: feature:451293-451373:-1:exon
so has part: feature:450795-450952:-1:exon

XP_030365110.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:454508-454715:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:454226-454294:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:453465-453545:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:453308-453373:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:453032-453132:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:451957-452082:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:451517-451583:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:451293-451373:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:450795-450952:-1:exon

RFXANK
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: RFXANK
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DNA-binding protein RFXANK isoform X1
translation: MEGEGAAARPVKTPPNAGAAQELSKGGENGAEGAAGAEELGASRDTGDSGVPPARLRPDHDMARLGHGDGGADALTKPSMDRQQSTELSGLDSFPLKHSNTLTNRQRGNEISALPATLDTLSIHQLAAQGELSQLKEHLRKGENLVNKPDERGFTPLIWAAAFGEIETVRHLLEWGADPHALAKERESALSLASMGGYTDIVTMLLERNVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTEEADSGYTPMDLAVALGHKKGYGKPHPQAISEQGAGMTQLLPLQLQHFSCPAKGSPLGTPWPHPAVLEWAVA
SIO_010081: RFXANK
subclass of: SO_0000673
so part of: RFXANK
location: complement(join(450795..450952,451293..451373,451517..451583,451957..452082,453032..453132,453308..453373,453465..453545,454226..454294,454508..454715))
location: region:450795-454715:-1
so has part: feature:454508-454715:-1:exon
so has part: feature:454226-454294:-1:exon
so has part: feature:453465-453545:-1:exon
so has part: feature:453308-453373:-1:exon
so has part: feature:453032-453132:-1:exon
so has part: feature:451957-452082:-1:exon
so has part: feature:451517-451583:-1:exon
so has part: feature:451293-451373:-1:exon
so has part: feature:450795-450952:-1:exon

XP_030365111.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:454508-454715:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:454226-454294:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:453465-453545:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:453308-453373:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:453032-453132:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:451957-452082:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:451517-451583:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:451293-451373:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:450795-450952:-1:exon

RFXANK
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: RFXANK
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DNA-binding protein RFXANK isoform X4
translation: MEGEGAAARPVKTPPNAGAAQELSKGGENGAEGAAGAEELGASRDTGDSGVPPARLRPDHDMARLGHGDGFPLKHSNTLTNRQRGNEISALPATLDTLSIHQLAAQGELSQLKEHLRKGENLVNKPDERGFTPLIWAAAFGEIETVRHLLEWGADPHALAKERESALSLASMGGYTDIVTMLLERNVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTEEADSGYTPMDLAVALGHKKVQQVMENHILKLFQNKELE
SIO_010081: RFXANK
subclass of: SO_0000673
so part of: RFXANK
location: complement(join(450902..450960,451293..451373,451517..451583,451957..452082,453032..453132,453308..453373,453465..453545,454508..454715))
location: region:450902-454715:-1
so has part: feature:454508-454715:-1:exon
so has part: feature:453465-453545:-1:exon
so has part: feature:453308-453373:-1:exon
so has part: feature:453032-453132:-1:exon
so has part: feature:451957-452082:-1:exon
so has part: feature:451517-451583:-1:exon
so has part: feature:451293-451373:-1:exon
so has part: feature:450902-450960:-1:exon

XP_030365115.1
type: Protein
SIO_000068: ncbiprotein

position:450902:-1
position: 450902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:454508-454715:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:453465-453545:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:453308-453373:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:453032-453132:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:451957-452082:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:451517-451583:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:451293-451373:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:450902-450960:-1:exon

RFXANK
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: RFXANK
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DNA-binding protein RFXANK isoform X3
translation: MEGEGAAARPVKTPPNAGAAQELSKGGENGAEGAAGAEELGASRDTGDSGVPPARLRPDHDMARLGHGDGGADALTKPSMDRQQSTELSGLDSFPLKHSNTLTNRQRGNEISALPATLDTLSIHQLAAQGELSQLKEHLRKGENLVNKPDERGFTPLIWAAAFGEIETVRHLLEWGADPHALAKERESALSLASMGGYTDIVTMLLERNVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTEEADSGYTPMDLAVALGHKKVQQVMENHILKLFQNKELE
SIO_010081: RFXANK
subclass of: SO_0000673
so part of: RFXANK
location: complement(join(450902..450960,451293..451373,451517..451583,451957..452082,453032..453132,453308..453373,453465..453545,454226..454294,454508..454715))
location: region:450902-454715:-1
so has part: feature:454508-454715:-1:exon
so has part: feature:454226-454294:-1:exon
so has part: feature:453465-453545:-1:exon
so has part: feature:453308-453373:-1:exon
so has part: feature:453032-453132:-1:exon
so has part: feature:451957-452082:-1:exon
so has part: feature:451517-451583:-1:exon
so has part: feature:451293-451373:-1:exon
so has part: feature:450902-450960:-1:exon

XP_030365113.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:454508-454715:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:454226-454294:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:453465-453545:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:453308-453373:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:453032-453132:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:451957-452082:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:451517-451583:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:451293-451373:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:450902-450960:-1:exon

RFXANK
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: RFXANK
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DNA-binding protein RFXANK isoform X3
translation: MEGEGAAARPVKTPPNAGAAQELSKGGENGAEGAAGAEELGASRDTGDSGVPPARLRPDHDMARLGHGDGGADALTKPSMDRQQSTELSGLDSFPLKHSNTLTNRQRGNEISALPATLDTLSIHQLAAQGELSQLKEHLRKGENLVNKPDERGFTPLIWAAAFGEIETVRHLLEWGADPHALAKERESALSLASMGGYTDIVTMLLERNVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTEEADSGYTPMDLAVALGHKKVQQVMENHILKLFQNKELE
SIO_010081: RFXANK
subclass of: SO_0000673
so part of: RFXANK
location: complement(join(450902..450960,451293..451373,451517..451583,451957..452082,453032..453132,453308..453373,453465..453545,454226..454294,454508..454715))
location: region:450902-454715:-1
so has part: feature:454508-454715:-1:exon
so has part: feature:454226-454294:-1:exon
so has part: feature:453465-453545:-1:exon
so has part: feature:453308-453373:-1:exon
so has part: feature:453032-453132:-1:exon
so has part: feature:451957-452082:-1:exon
so has part: feature:451517-451583:-1:exon
so has part: feature:451293-451373:-1:exon
so has part: feature:450902-450960:-1:exon

XP_030365114.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:454508-454715:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:454226-454294:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:453465-453545:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:453308-453373:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:453032-453132:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:451957-452082:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:451517-451583:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:451293-451373:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:450902-450960:-1:exon

BORCS8
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: BORCS8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 455302..462854
location: region:455302-462854:1
so has part: feature:455302-462854:1:exon
subclass of: SO_0000010

115618089
type: Gene
SIO_000068: ncbigene

position:455302:1
position: 455302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:462854:1
position: 462854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:455302-462854:1:exon

BORCS8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: BORCS8
product: BLOC-1 related complex subunit 8, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 55 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_030509261.1
SIO_010081: BORCS8
subclass of: SO_0000673
so part of: BORCS8
location: join(455302..455437,456647..456759,460594..460658,461218..461325,462295..462854)
location: region:455302-462854:1
so has part: feature:455302-455437:1:exon
so has part: feature:456647-456759:1:exon
so has part: feature:460594-460658:1:exon
so has part: feature:461218-461325:1:exon
so has part: feature:462295-462854:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:455302-455437:1:exon

position:455437:1
position: 455437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:456647-456759:1:exon

position:456647:1
position: 456647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:456759:1
position: 456759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:460594-460658:1:exon

position:460594:1
position: 460594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:460658:1
position: 460658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:461218-461325:1:exon

position:461218:1
position: 461218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:461325:1
position: 461325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:462295-462854:1:exon

position:462295:1
position: 462295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

BORCS8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: BORCS8
product: BLOC-1 related complex subunit 8, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 87 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_030509260.1
SIO_010081: BORCS8
subclass of: SO_0000673
so part of: BORCS8
location: join(455329..455447,456647..456759,460594..460658,461218..461325,462295..462854)
location: region:455329-462854:1
so has part: feature:455329-455447:1:exon
so has part: feature:456647-456759:1:exon
so has part: feature:460594-460658:1:exon
so has part: feature:461218-461325:1:exon
so has part: feature:462295-462854:1:exon

position:455329:1
position: 455329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:455329-455447:1:exon

position:455447:1
position: 455447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:456647-456759:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:460594-460658:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:461218-461325:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:462295-462854:1:exon

BORCS8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: BORCS8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: BLOC-1-related complex subunit 8 isoform X1
translation: MEEPEMQLKVKKVTDKFTESMYVLANEPSVALYRLQEHVRRSLPELAQHKSDMQSWEEQSQGAIYTVEYACSAIKNMTDSTVYFKSIDSLLKHAIAMKEQLNAAQGRSTVAPQAKNPPASS
SIO_010081: BORCS8
subclass of: SO_0000673
so part of: BORCS8
location: join(455411..455447,456647..456759,460594..460658,461218..461325,462295..462337)
location: region:455411-462337:1
so has part: feature:455411-455447:1:exon
so has part: feature:456647-456759:1:exon
so has part: feature:460594-460658:1:exon
so has part: feature:461218-461325:1:exon
so has part: feature:462295-462337:1:exon

XP_030365120.1
type: Protein
SIO_000068: ncbiprotein

position:455411:1
position: 455411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:462337:1
position: 462337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:455411-455447:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:456647-456759:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:460594-460658:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:461218-461325:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:462295-462337:1:exon

BORCS8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: BORCS8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: BLOC-1-related complex subunit 8 isoform X2
translation: MYVLANEPSVALYRLQEHVRRSLPELAQHKSDMQSWEEQSQGAIYTVEYACSAIKNMTDSTVYFKSIDSLLKHAIAMKEQLNAAQGRSTVAPQAKNPPASS
SIO_010081: BORCS8
subclass of: SO_0000673
so part of: BORCS8
location: join(456670..456759,460594..460658,461218..461325,462295..462337)
location: region:456670-462337:1
so has part: feature:456670-456759:1:exon
so has part: feature:460594-460658:1:exon
so has part: feature:461218-461325:1:exon
so has part: feature:462295-462337:1:exon

XP_030365121.1
type: Protein
SIO_000068: ncbiprotein

position:456670:1
position: 456670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:456670-456759:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:460594-460658:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:461218-461325:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:462295-462337:1:exon

TMEM221
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: TMEM221
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(462843..468989)
location: region:462843-468989:-1
so has part: feature:462843-468989:-1:exon
subclass of: SO_0000010

115618086
type: Gene
SIO_000068: ncbigene

position:462843:-1
position: 462843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:468989:-1
position: 468989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:462843-468989:-1:exon

TMEM221
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: TMEM221
product: transmembrane protein 221
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509256.1
SIO_010081: TMEM221
subclass of: SO_0000673
so part of: TMEM221
location: complement(join(462843..464744,464978..465063,468519..468989))
location: region:462843-468989:-1
so has part: feature:468519-468989:-1:exon
so has part: feature:464978-465063:-1:exon
so has part: feature:462843-464744:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:468519-468989:-1:exon

position:468519:-1
position: 468519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:464978-465063:-1:exon

position:464978:-1
position: 464978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:465063:-1
position: 465063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:462843-464744:-1:exon

position:464744:-1
position: 464744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TMEM221
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: TMEM221
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transmembrane protein 221
translation: MPAAYPQRALTVLLLFGTLAAAMALLASSLIFQLPSGRVGPGAGRGALPEPAAAVLLPVSAVLAALCLVLNVSCLLLCLLHGYFSTELCRGQSGPDRADWFLLDSRTVRHAAIGLFCCGVSVYLTALAIYMLLLFELEAGIASACILSSGIIVLLITVTHALVRASQVSRRGRSEVSHTLYENDSAQHGDSSTSDLNNKNVAAPRPRPEIHREFSFPPFLERKSQLGSPASSNLTSSGSPGLRSEKESYNLPRTHRTLSAESGLLQAQGKPWNSITQEMRNLMSRKPGASGKDSTLV
SIO_010081: TMEM221
subclass of: SO_0000673
so part of: TMEM221
location: complement(join(464227..464744,464978..465063,468519..468808))
location: region:464227-468808:-1
so has part: feature:468519-468808:-1:exon
so has part: feature:464978-465063:-1:exon
so has part: feature:464227-464744:-1:exon

XP_030365116.1
type: Protein
SIO_000068: ncbiprotein

position:464227:-1
position: 464227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:468808:-1
position: 468808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:468519-468808:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:464978-465063:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:464227-464744:-1:exon

MEF2B
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: MEF2B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 472405..482401
location: region:472405-482401:1
so has part: feature:472405-482401:1:exon
subclass of: SO_0000010

115618090
type: Gene
SIO_000068: ncbigene

position:472405:1
position: 472405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:482401:1
position: 482401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:472405-482401:1:exon

MEF2B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: MEF2B
product: myocyte enhancer factor 2B, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030509262.1
SIO_010081: MEF2B
subclass of: SO_0000673
so part of: MEF2B
location: join(472405..472578,478708..478787,478983..479186,479257..479385,479461..479623,480482..480627,480801..480912,480996..481089,481539..482401)
location: region:472405-482401:1
so has part: feature:472405-472578:1:exon
so has part: feature:478708-478787:1:exon
so has part: feature:478983-479186:1:exon
so has part: feature:479257-479385:1:exon
so has part: feature:479461-479623:1:exon
so has part: feature:480482-480627:1:exon
so has part: feature:480801-480912:1:exon
so has part: feature:480996-481089:1:exon
so has part: feature:481539-482401:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:472405-472578:1:exon

position:472578:1
position: 472578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:478708-478787:1:exon

position:478708:1
position: 478708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:478787:1
position: 478787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:478983-479186:1:exon

position:478983:1
position: 478983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:479186:1
position: 479186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:479257-479385:1:exon

position:479257:1
position: 479257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:479385:1
position: 479385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:479461-479623:1:exon

position:479461:1
position: 479461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:479623:1
position: 479623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:480482-480627:1:exon

position:480482:1
position: 480482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:480627:1
position: 480627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:480801-480912:1:exon

position:480801:1
position: 480801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:480912:1
position: 480912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:480996-481089:1:exon

position:480996:1
position: 480996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:481089:1
position: 481089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:481539-482401:1:exon

position:481539:1
position: 481539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MEF2B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: MEF2B
product: myocyte enhancer factor 2B, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 1 Protein, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030509264.1
SIO_010081: MEF2B
subclass of: SO_0000673
so part of: MEF2B
location: join(472407..472578,478708..478787,478983..479186,479257..479385,479461..479623,480482..480627,480801..480912,480999..481089,481539..481866)
location: region:472407-481866:1
so has part: feature:472407-472578:1:exon
so has part: feature:478708-478787:1:exon
so has part: feature:478983-479186:1:exon
so has part: feature:479257-479385:1:exon
so has part: feature:479461-479623:1:exon
so has part: feature:480482-480627:1:exon
so has part: feature:480801-480912:1:exon
so has part: feature:480999-481089:1:exon
so has part: feature:481539-481866:1:exon

position:472407:1
position: 472407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:481866:1
position: 481866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:472407-472578:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:478708-478787:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:478983-479186:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:479257-479385:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:479461-479623:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:480482-480627:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:480801-480912:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:480999-481089:1:exon

position:480999:1
position: 480999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:481539-481866:1:exon

MEF2B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: MEF2B
product: myocyte enhancer factor 2B, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 1 Protein, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030509265.1
SIO_010081: MEF2B
subclass of: SO_0000673
so part of: MEF2B
location: join(472407..472578,478708..478787,478983..479186,479257..479385,479461..479623,480482..480627,480825..480912,480996..481089,481539..481866)
location: region:472407-481866:1
so has part: feature:472407-472578:1:exon
so has part: feature:478708-478787:1:exon
so has part: feature:478983-479186:1:exon
so has part: feature:479257-479385:1:exon
so has part: feature:479461-479623:1:exon
so has part: feature:480482-480627:1:exon
so has part: feature:480825-480912:1:exon
so has part: feature:480996-481089:1:exon
so has part: feature:481539-481866:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:472407-472578:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:478708-478787:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:478983-479186:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:479257-479385:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:479461-479623:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:480482-480627:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:480825-480912:1:exon

position:480825:1
position: 480825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:480996-481089:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:481539-481866:1:exon

MEF2B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: MEF2B
product: myocyte enhancer factor 2B, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 1 Protein, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030509266.1
SIO_010081: MEF2B
subclass of: SO_0000673
so part of: MEF2B
location: join(472407..472578,478708..478787,478983..479186,479257..479385,479461..479623,480482..480597,480801..480912,480996..481089,481539..481866)
location: region:472407-481866:1
so has part: feature:472407-472578:1:exon
so has part: feature:478708-478787:1:exon
so has part: feature:478983-479186:1:exon
so has part: feature:479257-479385:1:exon
so has part: feature:479461-479623:1:exon
so has part: feature:480482-480597:1:exon
so has part: feature:480801-480912:1:exon
so has part: feature:480996-481089:1:exon
so has part: feature:481539-481866:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:472407-472578:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:478708-478787:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:478983-479186:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:479257-479385:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:479461-479623:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:480482-480597:1:exon

position:480597:1
position: 480597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:480801-480912:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:480996-481089:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:481539-481866:1:exon

MEF2B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: MEF2B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myocyte-specific enhancer factor 2B isoform X1
translation: MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNRLFQYASTDMDKVLLKYTEYSEPHESRTNSDILETLKRKGLGLESHELEVDEGLDPGEKARRLSEGMDLSVARPRFYSPAPLPEAAYGSSPPATSTSLSSTSTSPQGQGRPPAFKPAPPKPPGRSPGPLPPGIGYPLFPAGSLNRALATKTPPPLYLGAEGRCGESHSSLVSSRSSGTSTRPLYPALQTLSPVLTPGSSSIPSHGLTSFPFLTPAQAAEFGAGEAPPPSGFLQPGPTAWQHPRDMAALGVSSRIVPAEEPAPGASPQHQAISIKSERVSPGLGCPSGTPQPPPASLASLSEASRGPGDHQPRDDYAKGYPYPLGPPRPLPEEQRVPIPMRRAQAMDTWQR
SIO_010081: MEF2B
subclass of: SO_0000673
so part of: MEF2B
location: join(478734..478787,478983..479186,479257..479385,479461..479623,480482..480627,480801..480912,480996..481089,481539..481845)
location: region:478734-481845:1
so has part: feature:478734-478787:1:exon
so has part: feature:478983-479186:1:exon
so has part: feature:479257-479385:1:exon
so has part: feature:479461-479623:1:exon
so has part: feature:480482-480627:1:exon
so has part: feature:480801-480912:1:exon
so has part: feature:480996-481089:1:exon
so has part: feature:481539-481845:1:exon

XP_030365122.1
type: Protein
SIO_000068: ncbiprotein

position:478734:1
position: 478734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:481845:1
position: 481845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:478734-478787:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:478983-479186:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:479257-479385:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:479461-479623:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:480482-480627:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:480801-480912:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:480996-481089:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:481539-481845:1:exon

MEF2B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: MEF2B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myocyte-specific enhancer factor 2B isoform X2
translation: MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNRLFQYASTDMDKVLLKYTEYSEPHESRTNSDILETLKRKGLGLESHELEVDEGLDPGEKARRLSEGMDLSVARPRFYSPAPLPEAAYGSSPPATSTSLSSTSTSPQGQGRPPAFKPAPPKPPGRSPGPLPPGIGYPLFPAGSLNRALATKTPPPLYLGAEGRCGESHSSLVSSRSSGTSTRPLYPALQTLSPVLTPGSSSIPSHGLTSFPFLTPAQAEFGAGEAPPPSGFLQPGPTAWQHPRDMAALGVSSRIVPAEEPAPGASPQHQAISIKSERVSPGLGCPSGTPQPPPASLASLSEASRGPGDHQPRDDYAKGYPYPLGPPRPLPEEQRVPIPMRRAQAMDTWQR
SIO_010081: MEF2B
subclass of: SO_0000673
so part of: MEF2B
location: join(478734..478787,478983..479186,479257..479385,479461..479623,480482..480627,480801..480912,480999..481089,481539..481845)
location: region:478734-481845:1
so has part: feature:478734-478787:1:exon
so has part: feature:478983-479186:1:exon
so has part: feature:479257-479385:1:exon
so has part: feature:479461-479623:1:exon
so has part: feature:480482-480627:1:exon
so has part: feature:480801-480912:1:exon
so has part: feature:480999-481089:1:exon
so has part: feature:481539-481845:1:exon

XP_030365124.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:478734-478787:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:478983-479186:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:479257-479385:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:479461-479623:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:480482-480627:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:480801-480912:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:480999-481089:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:481539-481845:1:exon

MEF2B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: MEF2B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myocyte-specific enhancer factor 2B isoform X3
translation: MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNRLFQYASTDMDKVLLKYTEYSEPHESRTNSDILETLKRKGLGLESHELEVDEGLDPGEKARRLSEGMDLSVARPRFYSPAPLPEAAYGSSPPATSTSLSSTSTSPQGQGRPPAFKPAPPKPPGRSPGPLPPGIGYPLFPAGSLNRALATKTPPPLYLGAEGRCGESHSSLVSSRSSGTSTTLSPVLTPGSSSIPSHGLTSFPFLTPAQAAEFGAGEAPPPSGFLQPGPTAWQHPRDMAALGVSSRIVPAEEPAPGASPQHQAISIKSERVSPGLGCPSGTPQPPPASLASLSEASRGPGDHQPRDDYAKGYPYPLGPPRPLPEEQRVPIPMRRAQAMDTWQR
SIO_010081: MEF2B
subclass of: SO_0000673
so part of: MEF2B
location: join(478734..478787,478983..479186,479257..479385,479461..479623,480482..480627,480825..480912,480996..481089,481539..481845)
location: region:478734-481845:1
so has part: feature:478734-478787:1:exon
so has part: feature:478983-479186:1:exon
so has part: feature:479257-479385:1:exon
so has part: feature:479461-479623:1:exon
so has part: feature:480482-480627:1:exon
so has part: feature:480825-480912:1:exon
so has part: feature:480996-481089:1:exon
so has part: feature:481539-481845:1:exon

XP_030365125.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:478734-478787:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:478983-479186:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:479257-479385:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:479461-479623:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:480482-480627:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:480825-480912:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:480996-481089:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:481539-481845:1:exon

MEF2B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: MEF2B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myocyte-specific enhancer factor 2B isoform X4
translation: MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNRLFQYASTDMDKVLLKYTEYSEPHESRTNSDILETLKRKGLGLESHELEVDEGLDPGEKARRLSEGMDLSVARPRFYSPAPLPEAAYGSSPPATSTSLSSTSTSPQGQGRPPAFKPAPPKPPGRSPGPLPPGIGYPLFPAGSLNRALATKTPPPLYLGAEGRCGESHSSLRPLYPALQTLSPVLTPGSSSIPSHGLTSFPFLTPAQAAEFGAGEAPPPSGFLQPGPTAWQHPRDMAALGVSSRIVPAEEPAPGASPQHQAISIKSERVSPGLGCPSGTPQPPPASLASLSEASRGPGDHQPRDDYAKGYPYPLGPPRPLPEEQRVPIPMRRAQAMDTWQR
SIO_010081: MEF2B
subclass of: SO_0000673
so part of: MEF2B
location: join(478734..478787,478983..479186,479257..479385,479461..479623,480482..480597,480801..480912,480996..481089,481539..481845)
location: region:478734-481845:1
so has part: feature:478734-478787:1:exon
so has part: feature:478983-479186:1:exon
so has part: feature:479257-479385:1:exon
so has part: feature:479461-479623:1:exon
so has part: feature:480482-480597:1:exon
so has part: feature:480801-480912:1:exon
so has part: feature:480996-481089:1:exon
so has part: feature:481539-481845:1:exon

XP_030365126.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:478734-478787:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:478983-479186:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:479257-479385:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:479461-479623:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:480482-480597:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:480801-480912:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:480996-481089:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:481539-481845:1:exon

LOC115618306
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: LOC115618306
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 490793..516752
location: region:490793-516752:1
so has part: feature:490793-516752:1:exon
subclass of: SO_0000010

115618306
type: Gene
SIO_000068: ncbigene

position:490793:1
position: 490793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:516752:1
position: 516752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:490793-516752:1:exon

LOC115618306
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: LOC115618306
product: collagen alpha-1(I) chain-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 long SRA reads, and 67% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030509745.1
SIO_010081: LOC115618306
subclass of: SO_0000673
so part of: LOC115618306
location: join(490793..490915,491029..491253,491536..492559,504440..504783,515365..515516,515839..515956,516411..516752)
location: region:490793-516752:1
so has part: feature:490793-490915:1:exon
so has part: feature:491029-491253:1:exon
so has part: feature:491536-492559:1:exon
so has part: feature:504440-504783:1:exon
so has part: feature:515365-515516:1:exon
so has part: feature:515839-515956:1:exon
so has part: feature:516411-516752:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:490793-490915:1:exon

position:490915:1
position: 490915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:491029-491253:1:exon

position:491029:1
position: 491029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:491253:1
position: 491253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:491536-492559:1:exon

position:491536:1
position: 491536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:492559:1
position: 492559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:504440-504783:1:exon

position:504440:1
position: 504440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:504783:1
position: 504783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:515365-515516:1:exon

position:515365:1
position: 515365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:515516:1
position: 515516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:515839-515956:1:exon

position:515839:1
position: 515839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:515956:1
position: 515956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:516411-516752:1:exon

position:516411:1
position: 516411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115618306
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: LOC115618306
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: collagen alpha-1(I) chain-like
translation: MPVGTRSPRSLRPPLAVGTLAKGFPDSGTPGKGQKAPGEPPVHTYKRAGVGSGGRDGPVPPPRNRSAVSGSRAPLPAPTRCSRSPLEAEPARSCPQPGHRHDAVPGAGATAIPGPPPGTPGWETAHGGHGSARRCVPGVRRLRVPGKARCPPPLAGAASPLPGERSGSPAPGRASRARPWAAARGGRGAGPRHRVPGSAPPPLRAAAPLCPGPEVSLSGLGAEQRPGWSGNPVTSRHEGVVHTGFYTRTAAKSFASGARKCRLDGRVRPPLPRQLPRPGPVGFNPDLCRGGGCATALPERGYPRGTAASPTGRAGRCGRLGGERGRPGASRRAGPWGQRRPWRMALPPRGVTPAPAPRPACPSPAARALSPPAAPSLLPPSPALQPSLRRRLCLNFSGRSRWRRRAGEGPAPALAPSGIIQPPSRPEPPPYPATAWEGCGDPERRRPRAAPAPAGRAEEKFLCCFDLHCPVASLTGNSDGKQPGQCAPSPWT
SIO_010081: LOC115618306
subclass of: SO_0000673
so part of: LOC115618306
location: join(490793..490915,491029..491253,491536..492559,504440..504546)
location: region:490793-504546:1
so has part: feature:490793-490915:1:exon
so has part: feature:491029-491253:1:exon
so has part: feature:491536-492559:1:exon
so has part: feature:504440-504546:1:exon

XP_030365605.1
type: Protein
SIO_000068: ncbiprotein

position:504546:1
position: 504546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:490793-490915:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:491029-491253:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:491536-492559:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:504440-504546:1:exon

TMEM161A
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: TMEM161A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 519979..523966
location: region:519979-523966:1
so has part: feature:519979-523966:1:exon
subclass of: SO_0000010

115618091
type: Gene
SIO_000068: ncbigene

position:519979:1
position: 519979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:523966:1
position: 523966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:519979-523966:1:exon

TMEM161A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: TMEM161A
product: transmembrane protein 161A
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 44 long SRA reads, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_030509267.1
SIO_010081: TMEM161A
subclass of: SO_0000673
so part of: TMEM161A
location: join(519979..520041,520298..520401,520491..520571,520822..520919,521020..521176,521486..521637,521718..521778,521902..522045,522237..522350,522555..522729,522801..522897,523114..523966)
location: region:519979-523966:1
so has part: feature:519979-520041:1:exon
so has part: feature:520298-520401:1:exon
so has part: feature:520491-520571:1:exon
so has part: feature:520822-520919:1:exon
so has part: feature:521020-521176:1:exon
so has part: feature:521486-521637:1:exon
so has part: feature:521718-521778:1:exon
so has part: feature:521902-522045:1:exon
so has part: feature:522237-522350:1:exon
so has part: feature:522555-522729:1:exon
so has part: feature:522801-522897:1:exon
so has part: feature:523114-523966:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:519979-520041:1:exon

position:520041:1
position: 520041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:520298-520401:1:exon

position:520298:1
position: 520298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:520401:1
position: 520401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:520491-520571:1:exon

position:520491:1
position: 520491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:520571:1
position: 520571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:520822-520919:1:exon

position:520822:1
position: 520822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:520919:1
position: 520919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:521020-521176:1:exon

position:521020:1
position: 521020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:521176:1
position: 521176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:521486-521637:1:exon

position:521486:1
position: 521486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:521637:1
position: 521637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:521718-521778:1:exon

position:521718:1
position: 521718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:521778:1
position: 521778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:521902-522045:1:exon

position:521902:1
position: 521902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:522045:1
position: 522045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:522237-522350:1:exon

position:522237:1
position: 522237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:522350:1
position: 522350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:522555-522729:1:exon

position:522555:1
position: 522555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:522729:1
position: 522729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:522801-522897:1:exon

position:522801:1
position: 522801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:522897:1
position: 522897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:523114-523966:1:exon

position:523114:1
position: 523114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TMEM161A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: TMEM161A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transmembrane protein 161A
translation: MAVMGVQVVVTLLAASLMQKMAPHWSFARWLLCNGSLHRYKHPSDEELCALAGKQRPKAKRDRRMNGVMDDKPLSVPRDIDLRLDASPITAVDALVLRYFLDYQWFVDFALYSTAVYVFTEGYYCLVDPQKEMNIGVLWCLLTVVFSVKVFFMVMRHYFRSEEGGERSVCLTFAFFFLLLAMVALVIREDYLEFGLEPALAGVSTNLESILKQRGWEWTLPVAKLAFKLGLVALCSFLGACLTFPGLRLAQTHLDALRMAADKPLTQVLLHGSFLAPVLVVVMWIKPISRDFLLHAPMGKQTVQIMSDSAYNTVRLWTVVGLCLLRLAVTRHHLQAYLGLAERWVEQMRKEAGRIPVLEIQRKITRIYCYVSVVSLQYLGPIILTLHCTLLLKTLGHHSWGLYPEPPPVPPAVVAPRRPGGEDVRAAVEQVSAVMGSIFTPLFFRGLFAFLTWWVAACQVVTSLFGLYFHQYLAAS
SIO_010081: TMEM161A
subclass of: SO_0000673
so part of: TMEM161A
location: join(520039..520041,520298..520401,520491..520571,520822..520919,521020..521176,521486..521637,521718..521778,521902..522045,522237..522350,522555..522729,522801..522897,523114..523358)
location: region:520039-523358:1
so has part: feature:520039-520041:1:exon
so has part: feature:520298-520401:1:exon
so has part: feature:520491-520571:1:exon
so has part: feature:520822-520919:1:exon
so has part: feature:521020-521176:1:exon
so has part: feature:521486-521637:1:exon
so has part: feature:521718-521778:1:exon
so has part: feature:521902-522045:1:exon
so has part: feature:522237-522350:1:exon
so has part: feature:522555-522729:1:exon
so has part: feature:522801-522897:1:exon
so has part: feature:523114-523358:1:exon

XP_030365127.1
type: Protein
SIO_000068: ncbiprotein

position:520039:1
position: 520039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:523358:1
position: 523358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:520039-520041:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:520298-520401:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:520491-520571:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:520822-520919:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:521020-521176:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:521486-521637:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:521718-521778:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:521902-522045:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:522237-522350:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:522555-522729:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:522801-522897:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:523114-523358:1:exon

SLC25A42
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: SLC25A42
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(526034..545951)
location: region:526034-545951:-1
so has part: feature:526034-545951:-1:exon
subclass of: SO_0000010

115618093
type: Gene
SIO_000068: ncbigene

position:526034:-1
position: 526034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:545951:-1
position: 545951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:526034-545951:-1:exon

SLC25A42
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: SLC25A42
product: solute carrier family 25 member 42, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 60 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_030509270.1
SIO_010081: SLC25A42
subclass of: SO_0000673
so part of: SLC25A42
location: complement(join(526034..530973,531476..531627,532875..533041,533834..533859,536181..536292,537405..537726))
location: region:526034-537726:-1
so has part: feature:537405-537726:-1:exon
so has part: feature:536181-536292:-1:exon
so has part: feature:533834-533859:-1:exon
so has part: feature:532875-533041:-1:exon
so has part: feature:531476-531627:-1:exon
so has part: feature:526034-530973:-1:exon

position:537726:-1
position: 537726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:537405-537726:-1:exon

position:537405:-1
position: 537405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:536181-536292:-1:exon

position:536181:-1
position: 536181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:536292:-1
position: 536292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:533834-533859:-1:exon

position:533834:-1
position: 533834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:533859:-1
position: 533859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:532875-533041:-1:exon

position:532875:-1
position: 532875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:533041:-1
position: 533041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:531476-531627:-1:exon

position:531476:-1
position: 531476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:531627:-1
position: 531627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:526034-530973:-1:exon

position:530973:-1
position: 530973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SLC25A42
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: SLC25A42
product: solute carrier family 25 member 42, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 long SRA read, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030509269.1
SIO_010081: SLC25A42
subclass of: SO_0000673
so part of: SLC25A42
location: complement(join(530264..530973,531476..531627,532129..532245,532875..533041,533834..533859,536181..536292,537405..537527,544658..545951))
location: region:530264-545951:-1
so has part: feature:544658-545951:-1:exon
so has part: feature:537405-537527:-1:exon
so has part: feature:536181-536292:-1:exon
so has part: feature:533834-533859:-1:exon
so has part: feature:532875-533041:-1:exon
so has part: feature:532129-532245:-1:exon
so has part: feature:531476-531627:-1:exon
so has part: feature:530264-530973:-1:exon

position:530264:-1
position: 530264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:544658-545951:-1:exon

position:544658:-1
position: 544658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:537405-537527:-1:exon

position:537527:-1
position: 537527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:536181-536292:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:533834-533859:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:532875-533041:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:532129-532245:-1:exon

position:532129:-1
position: 532129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:532245:-1
position: 532245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:531476-531627:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:530264-530973:-1:exon

SLC25A42
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: SLC25A42
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mitochondrial coenzyme A transporter SLC25A42 isoform X2
translation: MGNGVREGRVDFQRQDVEPVPSTHLPPEETREKKNVLNSLMSGALAGAVAKTAVAPLDRTKIMFQVSSKRFSAKEAYRLIYRTYLNEGLWSLWRGNSATMVRVIPYAAIQFCAHEEYKQLLGSYYGFQGKYSNIVHVFIRISREEGLKTLYRGFTPTIIGVIPYAGLSFFTYETLKKLHADHSGKLQPSPPERLLFGACAGLIGQSASYPLDVVRRRMQTAGVTGHTYSSILLTMQEIIREEGLIRGLYKGLSMNWVKGPIAVGISFTTFDLTQILLRKLQHSSNIER
SIO_010081: SLC25A42
subclass of: SO_0000673
so part of: SLC25A42
location: complement(join(530648..530973,531476..531627,532875..533041,533834..533859,536181..536292,537405..537488))
location: region:530648-537488:-1
so has part: feature:537405-537488:-1:exon
so has part: feature:536181-536292:-1:exon
so has part: feature:533834-533859:-1:exon
so has part: feature:532875-533041:-1:exon
so has part: feature:531476-531627:-1:exon
so has part: feature:530648-530973:-1:exon

XP_030365130.1
type: Protein
SIO_000068: ncbiprotein

position:530648:-1
position: 530648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:537488:-1
position: 537488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:537405-537488:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:536181-536292:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:533834-533859:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:532875-533041:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:531476-531627:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:530648-530973:-1:exon

SLC25A42
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: SLC25A42
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mitochondrial coenzyme A transporter SLC25A42 isoform X1
translation: MGNGVREGRVDFQRQDVEPVPSTHLPPEETREKKNVLNSLMSGALAGAVAKTAVAPLDRTKIMFQVSSKRFSAKEAYRLIYRTYLNEGLWSLWRGNSATMVRVIPYAAIQFCAHEEYKQLLGSYYGFQGKALTPFPRFIAGSLAGTTAAMLTYPLDMVRARMAVTPKEMYSNIVHVFIRISREEGLKTLYRGFTPTIIGVIPYAGLSFFTYETLKKLHADHSGKLQPSPPERLLFGACAGLIGQSASYPLDVVRRRMQTAGVTGHTYSSILLTMQEIIREEGLIRGLYKGLSMNWVKGPIAVGISFTTFDLTQILLRKLQHSSNIER
SIO_010081: SLC25A42
subclass of: SO_0000673
so part of: SLC25A42
location: complement(join(530648..530973,531476..531627,532129..532245,532875..533041,533834..533859,536181..536292,537405..537488))
location: region:530648-537488:-1
so has part: feature:537405-537488:-1:exon
so has part: feature:536181-536292:-1:exon
so has part: feature:533834-533859:-1:exon
so has part: feature:532875-533041:-1:exon
so has part: feature:532129-532245:-1:exon
so has part: feature:531476-531627:-1:exon
so has part: feature:530648-530973:-1:exon

XP_030365129.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:537405-537488:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:536181-536292:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:533834-533859:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:532875-533041:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:532129-532245:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:531476-531627:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:530648-530973:-1:exon

ARMC6
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: ARMC6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(547384..553715)
location: region:547384-553715:-1
so has part: feature:547384-553715:-1:exon
subclass of: SO_0000010

115618096
type: Gene
SIO_000068: ncbigene

position:547384:-1
position: 547384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:553715:-1
position: 553715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:547384-553715:-1:exon

ARMC6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: ARMC6
product: armadillo repeat containing 6, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs, 415 long SRA reads, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_030509276.1
SIO_010081: ARMC6
subclass of: SO_0000673
so part of: ARMC6
location: complement(join(547384..548635,549191..549328,549829..549960,550320..550465,550946..551516,552017..552099,552553..552705,553620..553715))
location: region:547384-553715:-1
so has part: feature:553620-553715:-1:exon
so has part: feature:552553-552705:-1:exon
so has part: feature:552017-552099:-1:exon
so has part: feature:550946-551516:-1:exon
so has part: feature:550320-550465:-1:exon
so has part: feature:549829-549960:-1:exon
so has part: feature:549191-549328:-1:exon
so has part: feature:547384-548635:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:553620-553715:-1:exon

position:553620:-1
position: 553620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:552553-552705:-1:exon

position:552553:-1
position: 552553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:552705:-1
position: 552705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:552017-552099:-1:exon

position:552017:-1
position: 552017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:552099:-1
position: 552099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:550946-551516:-1:exon

position:550946:-1
position: 550946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:551516:-1
position: 551516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:550320-550465:-1:exon

position:550320:-1
position: 550320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:550465:-1
position: 550465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:549829-549960:-1:exon

position:549829:-1
position: 549829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:549960:-1
position: 549960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:549191-549328:-1:exon

position:549191:-1
position: 549191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:549328:-1
position: 549328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:547384-548635:-1:exon

position:548635:-1
position: 548635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ARMC6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: ARMC6
product: armadillo repeat containing 6, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs, 372 long SRA reads, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_030509275.1
SIO_010081: ARMC6
subclass of: SO_0000673
so part of: ARMC6
location: complement(join(547384..548635,549191..549328,549829..549960,550320..550465,550946..551516,552017..552099,552553..552705,553244..553358))
location: region:547384-553358:-1
so has part: feature:553244-553358:-1:exon
so has part: feature:552553-552705:-1:exon
so has part: feature:552017-552099:-1:exon
so has part: feature:550946-551516:-1:exon
so has part: feature:550320-550465:-1:exon
so has part: feature:549829-549960:-1:exon
so has part: feature:549191-549328:-1:exon
so has part: feature:547384-548635:-1:exon

position:553358:-1
position: 553358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:553244-553358:-1:exon

position:553244:-1
position: 553244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:552553-552705:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:552017-552099:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:550946-551516:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:550320-550465:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:549829-549960:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:549191-549328:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:547384-548635:-1:exon

ARMC6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: ARMC6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: armadillo repeat-containing protein 6
translation: MGSKQITQETFDDAVQENMTEFEMDPEEAVREAVQQFESQGVDLSNIVKAVRPPASENGQKQKHEILLTLDALGKAVADSDLAEVAEQLVVFTAQCKEQLAFRCLAGQNGAYPVVFSACQVASGDRNLMLKAFYTLSALLDGQPDLLDSAGQDLLLQTLQEYREDADMVLAGIRCVRHACLKHEQNRQDFVKGGILPLLTGAIIQHRHSADVVRAAASALRIMTFDDDIRVPFGHAHDHAKMIVLENDGLRVLIEAAKAFTDNSSVLSELCATLSRLSVRNEFCQEIVDLGGLNFMVSLLADCIDHPDVVKQVLSAIRAVAGNDDVKDAIVSAGATDLIVLAISHHLANPQICEQGCAALCMLALRKPENCSVIMEGGGALAALQAMKAHPREVAVQKQACMLIRNLVARSRDFSQPILEMGAENLITEARATHRDCDDVAKAALRDLGCKVELRELWTGQKGGLAQ
SIO_010081: ARMC6
subclass of: SO_0000673
so part of: ARMC6
location: complement(join(548423..548635,549191..549328,549829..549960,550320..550465,550946..551516,552017..552099,552553..552673))
location: region:548423-552673:-1
so has part: feature:552553-552673:-1:exon
so has part: feature:552017-552099:-1:exon
so has part: feature:550946-551516:-1:exon
so has part: feature:550320-550465:-1:exon
so has part: feature:549829-549960:-1:exon
so has part: feature:549191-549328:-1:exon
so has part: feature:548423-548635:-1:exon

XP_030365135.1
type: Protein
SIO_000068: ncbiprotein

position:548423:-1
position: 548423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:552673:-1
position: 552673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:552553-552673:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:552017-552099:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:550946-551516:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:550320-550465:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:549829-549960:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:549191-549328:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:548423-548635:-1:exon

ARMC6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: ARMC6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: armadillo repeat-containing protein 6
translation: MGSKQITQETFDDAVQENMTEFEMDPEEAVREAVQQFESQGVDLSNIVKAVRPPASENGQKQKHEILLTLDALGKAVADSDLAEVAEQLVVFTAQCKEQLAFRCLAGQNGAYPVVFSACQVASGDRNLMLKAFYTLSALLDGQPDLLDSAGQDLLLQTLQEYREDADMVLAGIRCVRHACLKHEQNRQDFVKGGILPLLTGAIIQHRHSADVVRAAASALRIMTFDDDIRVPFGHAHDHAKMIVLENDGLRVLIEAAKAFTDNSSVLSELCATLSRLSVRNEFCQEIVDLGGLNFMVSLLADCIDHPDVVKQVLSAIRAVAGNDDVKDAIVSAGATDLIVLAISHHLANPQICEQGCAALCMLALRKPENCSVIMEGGGALAALQAMKAHPREVAVQKQACMLIRNLVARSRDFSQPILEMGAENLITEARATHRDCDDVAKAALRDLGCKVELRELWTGQKGGLAQ
SIO_010081: ARMC6
subclass of: SO_0000673
so part of: ARMC6
location: complement(join(548423..548635,549191..549328,549829..549960,550320..550465,550946..551516,552017..552099,552553..552673))
location: region:548423-552673:-1
so has part: feature:552553-552673:-1:exon
so has part: feature:552017-552099:-1:exon
so has part: feature:550946-551516:-1:exon
so has part: feature:550320-550465:-1:exon
so has part: feature:549829-549960:-1:exon
so has part: feature:549191-549328:-1:exon
so has part: feature:548423-548635:-1:exon

XP_030365136.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:552553-552673:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:552017-552099:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:550946-551516:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:550320-550465:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:549829-549960:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:549191-549328:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:548423-548635:-1:exon

SUGP2
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: SUGP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 553489..570565
location: region:553489-570565:1
so has part: feature:553489-570565:1:exon
subclass of: SO_0000010

115618094
type: Gene
SIO_000068: ncbigene

position:553489:1
position: 553489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:570565:1
position: 570565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:553489-570565:1:exon

SUGP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: SUGP2
product: SURP and G-patch domain containing 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 280 long SRA reads, 4 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_030509273.1
SIO_010081: SUGP2
subclass of: SO_0000673
so part of: SUGP2
location: join(553489..554331,555445..557121,558028..558145,558819..559327,559508..559619,560409..560929,561799..561863,562434..562570,565816..565936,568952..570565)
location: region:553489-570565:1
so has part: feature:553489-554331:1:exon
so has part: feature:555445-557121:1:exon
so has part: feature:558028-558145:1:exon
so has part: feature:558819-559327:1:exon
so has part: feature:559508-559619:1:exon
so has part: feature:560409-560929:1:exon
so has part: feature:561799-561863:1:exon
so has part: feature:562434-562570:1:exon
so has part: feature:565816-565936:1:exon
so has part: feature:568952-570565:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:553489-554331:1:exon

position:554331:1
position: 554331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:555445-557121:1:exon

position:555445:1
position: 555445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:557121:1
position: 557121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:558028-558145:1:exon

position:558028:1
position: 558028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:558145:1
position: 558145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:558819-559327:1:exon

position:558819:1
position: 558819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:559327:1
position: 559327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:559508-559619:1:exon

position:559508:1
position: 559508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:559619:1
position: 559619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:560409-560929:1:exon

position:560409:1
position: 560409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:560929:1
position: 560929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:561799-561863:1:exon

position:561799:1
position: 561799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:561863:1
position: 561863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:562434-562570:1:exon

position:562434:1
position: 562434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:562570:1
position: 562570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:565816-565936:1:exon

position:565816:1
position: 565816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:565936:1
position: 565936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:568952-570565:1:exon

position:568952:1
position: 568952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SUGP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: SUGP2
product: SURP and G-patch domain containing 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 367 long SRA reads, 4 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_030509271.1
SIO_010081: SUGP2
subclass of: SO_0000673
so part of: SUGP2
location: join(553782..554331,555445..557121,558028..558145,558819..559327,559508..559619,560409..560929,561799..561863,562434..562570,565816..570565)
location: region:553782-570565:1
so has part: feature:553782-554331:1:exon
so has part: feature:555445-557121:1:exon
so has part: feature:558028-558145:1:exon
so has part: feature:558819-559327:1:exon
so has part: feature:559508-559619:1:exon
so has part: feature:560409-560929:1:exon
so has part: feature:561799-561863:1:exon
so has part: feature:562434-562570:1:exon
so has part: feature:565816-570565:1:exon

position:553782:1
position: 553782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:553782-554331:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:555445-557121:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:558028-558145:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:558819-559327:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:559508-559619:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:560409-560929:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:561799-561863:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:562434-562570:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:565816-570565:1:exon

SUGP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: SUGP2
product: SURP and G-patch domain containing 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 388 long SRA reads, 4 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_030509272.1
SIO_010081: SUGP2
subclass of: SO_0000673
so part of: SUGP2
location: join(553782..554331,555445..557121,558028..558145,558819..559327,559508..559619,560409..560929,561799..561863,562434..562570,565816..565936,566128..570565)
location: region:553782-570565:1
so has part: feature:553782-554331:1:exon
so has part: feature:555445-557121:1:exon
so has part: feature:558028-558145:1:exon
so has part: feature:558819-559327:1:exon
so has part: feature:559508-559619:1:exon
so has part: feature:560409-560929:1:exon
so has part: feature:561799-561863:1:exon
so has part: feature:562434-562570:1:exon
so has part: feature:565816-565936:1:exon
so has part: feature:566128-570565:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:553782-554331:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:555445-557121:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:558028-558145:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:558819-559327:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:559508-559619:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:560409-560929:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:561799-561863:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:562434-562570:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:565816-565936:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:566128-570565:1:exon

position:566128:1
position: 566128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SUGP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: SUGP2
product: SURP and G-patch domain containing 2, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 256 long SRA reads, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_030509274.1
SIO_010081: SUGP2
subclass of: SO_0000673
so part of: SUGP2
location: join(553782..554331,555445..557121,558028..558145,558819..559327,559508..559619,560409..560929,561799..561863,562434..562570,568952..570565)
location: region:553782-570565:1
so has part: feature:553782-554331:1:exon
so has part: feature:555445-557121:1:exon
so has part: feature:558028-558145:1:exon
so has part: feature:558819-559327:1:exon
so has part: feature:559508-559619:1:exon
so has part: feature:560409-560929:1:exon
so has part: feature:561799-561863:1:exon
so has part: feature:562434-562570:1:exon
so has part: feature:568952-570565:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:553782-554331:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:555445-557121:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:558028-558145:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:558819-559327:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:559508-559619:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:560409-560929:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:561799-561863:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:562434-562570:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:568952-570565:1:exon

SUGP2
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 2489341
gene: SUGP2
product: SURP and G-patch domain containing 2, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 335 long SRA reads, 4 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_003994729.1
SIO_010081: SUGP2
so part of: SUGP2
location: join(553848..554331,555445..557121,558028..558145,558819..559327,559508..559619,560409..560695,560815..560929,561799..561863,562434..562570,565816..565936,566128..570565)
location: region:553848-570565:1
so has part: feature:553848-554331:1:exon
so has part: feature:555445-557121:1:exon
so has part: feature:558028-558145:1:exon
so has part: feature:558819-559327:1:exon
so has part: feature:559508-559619:1:exon
so has part: feature:560409-560695:1:exon
so has part: feature:560815-560929:1:exon
so has part: feature:561799-561863:1:exon
so has part: feature:562434-562570:1:exon
so has part: feature:565816-565936:1:exon
so has part: feature:566128-570565:1:exon

position:553848:1
position: 553848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:553848-554331:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:555445-557121:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:558028-558145:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:558819-559327:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:559508-559619:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:560409-560695:1:exon

position:560695:1
position: 560695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:560815-560929:1:exon

position:560815:1
position: 560815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:561799-561863:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:562434-562570:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:565816-565936:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:566128-570565:1:exon

SUGP2
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 2489341
gene: SUGP2
product: SURP and G-patch domain containing 2, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 222 long SRA reads, 4 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_003994730.1
SIO_010081: SUGP2
so part of: SUGP2
location: join(553848..554331,555445..557121,558028..558145,558819..559327,559508..559619,560409..560695,560815..560929,561799..561863,562434..562570,565816..565936,568952..570565)
location: region:553848-570565:1
so has part: feature:553848-554331:1:exon
so has part: feature:555445-557121:1:exon
so has part: feature:558028-558145:1:exon
so has part: feature:558819-559327:1:exon
so has part: feature:559508-559619:1:exon
so has part: feature:560409-560695:1:exon
so has part: feature:560815-560929:1:exon
so has part: feature:561799-561863:1:exon
so has part: feature:562434-562570:1:exon
so has part: feature:565816-565936:1:exon
so has part: feature:568952-570565:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:553848-554331:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:555445-557121:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:558028-558145:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:558819-559327:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:559508-559619:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:560409-560695:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:560815-560929:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:561799-561863:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:562434-562570:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:565816-565936:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:568952-570565:1:exon

SUGP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: SUGP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SURP and G-patch domain-containing protein 2 isoform X2
translation: MASRRITRETFDAVVQDKVKRYRMDRGDAIEDTIHHFKARSRPVPRPRYDNSFRDDGRYAHDNAQHHPHDDWSEDPRDDYPGPSYRTANPLIRKDNYYHEQFGRPASRDREFGHPASRDREFGHPASHNREYRRPAAHKREFGRPASRDREYRRPASHDREYGHPASHDREYVGLASHDQDYGPPDSWESTGPHETDFSSSDILGDFRSPGLMEDEYGNMENQEYDVDFGIQSDGEFRPPIRRGSSGRGRALRGKRIARGGVKTKVFKGELKAPLKKWNTKKLQPGLDQMPPEQPEQLPEGAEQPSQRPGPVQHPNQKLPPQPNQRPTITTQRPILRLPKPAHVFRNLNFDLVDKSDIFSTFGIEIIKWAGFHAIKTDAEFSRLFGALFELETETCAKMLASFKCSLKPEHRDYCFFTIKSLQHAALKTPKVDNEFLNMLLDKGAVKTKNCFFEIIKPFDKYIMRLQDRLLKGVTPLLMACNAYELSIKTSGFGNPREMASAFETTVSLCRKSLALLGQTFALASVFRQEKILEAVGLQEMAPAPTLFPNFDDSTLFGREYIENLKAWLEKSGYPIQMKKTEQESTEPLKKPSPDPKVPQRADRKVVETIEELVTSIVSGTLSAKERTAQKNCPEYWFLSDEDSLEYKYYRLRLSEMQRRTSPGTEVGVEGRTLEGSAAEAVRAMLYARKVASIKRRLFKRKRLGISTHRGARGRKGRRASTGTQTVLSAGTVLKHQDKHLQGSVQAKPSASEPSLCEKSPALDATSPSQCAAGSEVSLPAEERADSEGFSAPPDLLPPLPSQFPDVDAKTMETAEKLAKFVAQVGPEIEQFSIDNSTDNPDLWFLQDRNSSAFKFYRMKVYELCPSINFSAVSEATDAGESAKPEERNLDISEEEEDEEEEEEEDNEEEAEFEEDISQPLEGIDMEQAEEGEEDDMSAGRSVENLAEEMISKPGEEMSPGEVQLAASSDGAVPNLSTQASAPAPGTPFPRKRISSKSLKVGMIPASKRICLIEEPKVHEPVRIAYDRPRGCPVTKKKKKPKDLEFSHKKLTNRNVGFQMLQKMGWQEGHGLGTRGKGIREPVKVSRLSSMKTASFSEHFN
SIO_010081: SUGP2
subclass of: SO_0000673
so part of: SUGP2
location: join(554217..554331,555445..557121,558028..558145,558819..559327,559508..559619,560409..560929,561799..561863,562434..562570,568952..569003)
location: region:554217-569003:1
so has part: feature:554217-554331:1:exon
so has part: feature:555445-557121:1:exon
so has part: feature:558028-558145:1:exon
so has part: feature:558819-559327:1:exon
so has part: feature:559508-559619:1:exon
so has part: feature:560409-560929:1:exon
so has part: feature:561799-561863:1:exon
so has part: feature:562434-562570:1:exon
so has part: feature:568952-569003:1:exon

XP_030365134.1
type: Protein
SIO_000068: ncbiprotein

position:554217:1
position: 554217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:569003:1
position: 569003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:554217-554331:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:555445-557121:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:558028-558145:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:558819-559327:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:559508-559619:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:560409-560929:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:561799-561863:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:562434-562570:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:568952-569003:1:exon

SUGP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: SUGP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SURP and G-patch domain-containing protein 2 isoform X1
translation: MASRRITRETFDAVVQDKVKRYRMDRGDAIEDTIHHFKARSRPVPRPRYDNSFRDDGRYAHDNAQHHPHDDWSEDPRDDYPGPSYRTANPLIRKDNYYHEQFGRPASRDREFGHPASRDREFGHPASHNREYRRPAAHKREFGRPASRDREYRRPASHDREYGHPASHDREYVGLASHDQDYGPPDSWESTGPHETDFSSSDILGDFRSPGLMEDEYGNMENQEYDVDFGIQSDGEFRPPIRRGSSGRGRALRGKRIARGGVKTKVFKGELKAPLKKWNTKKLQPGLDQMPPEQPEQLPEGAEQPSQRPGPVQHPNQKLPPQPNQRPTITTQRPILRLPKPAHVFRNLNFDLVDKSDIFSTFGIEIIKWAGFHAIKTDAEFSRLFGALFELETETCAKMLASFKCSLKPEHRDYCFFTIKSLQHAALKTPKVDNEFLNMLLDKGAVKTKNCFFEIIKPFDKYIMRLQDRLLKGVTPLLMACNAYELSIKTSGFGNPREMASAFETTVSLCRKSLALLGQTFALASVFRQEKILEAVGLQEMAPAPTLFPNFDDSTLFGREYIENLKAWLEKSGYPIQMKKTEQESTEPLKKPSPDPKVPQRADRKVVETIEELVTSIVSGTLSAKERTAQKNCPEYWFLSDEDSLEYKYYRLRLSEMQRRTSPGTEVGVEGRTLEGSAAEAVRAMLYARKVASIKRRLFKRKRLGISTHRGARGRKGRRASTGTQTVLSAGTVLKHQDKHLQGSVQAKPSASEPSLCEKSPALDATSPSQCAAGSEVSLPAEERADSEGFSAPPDLLPPLPSQFPDVDAKTMETAEKLAKFVAQVGPEIEQFSIDNSTDNPDLWFLQDRNSSAFKFYRMKVYELCPSINFSAVSEATDAGESAKPEERNLDISEEEEDEEEEEEEDNEEEAEFEEDISQPLEGIDMEQAEEGEEDDMSAGRSVENLAEEMISKPGEEMSPGEVQLAASSDGAVPNLSTQASAPAPGTPFPRKRISSKSLKVGMIPASKRICLIEEPKVHEPVRIAYDRPRGCPVTKKKKKPKDLEFSHKKLTNRNVGFQMLQKMGWQEGHGLGTRGKGIREPVKVGATSAGEGLGVAGEENKEDAFDVFRQRMIQMYRQKRASK
SIO_010081: SUGP2
subclass of: SO_0000673
so part of: SUGP2
location: join(554217..554331,555445..557121,558028..558145,558819..559327,559508..559619,560409..560929,561799..561863,562434..562570,565816..565936)
location: region:554217-565936:1
so has part: feature:554217-554331:1:exon
so has part: feature:555445-557121:1:exon
so has part: feature:558028-558145:1:exon
so has part: feature:558819-559327:1:exon
so has part: feature:559508-559619:1:exon
so has part: feature:560409-560929:1:exon
so has part: feature:561799-561863:1:exon
so has part: feature:562434-562570:1:exon
so has part: feature:565816-565936:1:exon

XP_030365131.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:554217-554331:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:555445-557121:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:558028-558145:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:558819-559327:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:559508-559619:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:560409-560929:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:561799-561863:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:562434-562570:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:565816-565936:1:exon

SUGP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: SUGP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SURP and G-patch domain-containing protein 2 isoform X1
translation: MASRRITRETFDAVVQDKVKRYRMDRGDAIEDTIHHFKARSRPVPRPRYDNSFRDDGRYAHDNAQHHPHDDWSEDPRDDYPGPSYRTANPLIRKDNYYHEQFGRPASRDREFGHPASRDREFGHPASHNREYRRPAAHKREFGRPASRDREYRRPASHDREYGHPASHDREYVGLASHDQDYGPPDSWESTGPHETDFSSSDILGDFRSPGLMEDEYGNMENQEYDVDFGIQSDGEFRPPIRRGSSGRGRALRGKRIARGGVKTKVFKGELKAPLKKWNTKKLQPGLDQMPPEQPEQLPEGAEQPSQRPGPVQHPNQKLPPQPNQRPTITTQRPILRLPKPAHVFRNLNFDLVDKSDIFSTFGIEIIKWAGFHAIKTDAEFSRLFGALFELETETCAKMLASFKCSLKPEHRDYCFFTIKSLQHAALKTPKVDNEFLNMLLDKGAVKTKNCFFEIIKPFDKYIMRLQDRLLKGVTPLLMACNAYELSIKTSGFGNPREMASAFETTVSLCRKSLALLGQTFALASVFRQEKILEAVGLQEMAPAPTLFPNFDDSTLFGREYIENLKAWLEKSGYPIQMKKTEQESTEPLKKPSPDPKVPQRADRKVVETIEELVTSIVSGTLSAKERTAQKNCPEYWFLSDEDSLEYKYYRLRLSEMQRRTSPGTEVGVEGRTLEGSAAEAVRAMLYARKVASIKRRLFKRKRLGISTHRGARGRKGRRASTGTQTVLSAGTVLKHQDKHLQGSVQAKPSASEPSLCEKSPALDATSPSQCAAGSEVSLPAEERADSEGFSAPPDLLPPLPSQFPDVDAKTMETAEKLAKFVAQVGPEIEQFSIDNSTDNPDLWFLQDRNSSAFKFYRMKVYELCPSINFSAVSEATDAGESAKPEERNLDISEEEEDEEEEEEEDNEEEAEFEEDISQPLEGIDMEQAEEGEEDDMSAGRSVENLAEEMISKPGEEMSPGEVQLAASSDGAVPNLSTQASAPAPGTPFPRKRISSKSLKVGMIPASKRICLIEEPKVHEPVRIAYDRPRGCPVTKKKKKPKDLEFSHKKLTNRNVGFQMLQKMGWQEGHGLGTRGKGIREPVKVGATSAGEGLGVAGEENKEDAFDVFRQRMIQMYRQKRASK
SIO_010081: SUGP2
subclass of: SO_0000673
so part of: SUGP2
location: join(554217..554331,555445..557121,558028..558145,558819..559327,559508..559619,560409..560929,561799..561863,562434..562570,565816..565936)
location: region:554217-565936:1
so has part: feature:554217-554331:1:exon
so has part: feature:555445-557121:1:exon
so has part: feature:558028-558145:1:exon
so has part: feature:558819-559327:1:exon
so has part: feature:559508-559619:1:exon
so has part: feature:560409-560929:1:exon
so has part: feature:561799-561863:1:exon
so has part: feature:562434-562570:1:exon
so has part: feature:565816-565936:1:exon

XP_030365132.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:554217-554331:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:555445-557121:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:558028-558145:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:558819-559327:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:559508-559619:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:560409-560929:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:561799-561863:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:562434-562570:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:565816-565936:1:exon

SUGP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: SUGP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SURP and G-patch domain-containing protein 2 isoform X1
translation: MASRRITRETFDAVVQDKVKRYRMDRGDAIEDTIHHFKARSRPVPRPRYDNSFRDDGRYAHDNAQHHPHDDWSEDPRDDYPGPSYRTANPLIRKDNYYHEQFGRPASRDREFGHPASRDREFGHPASHNREYRRPAAHKREFGRPASRDREYRRPASHDREYGHPASHDREYVGLASHDQDYGPPDSWESTGPHETDFSSSDILGDFRSPGLMEDEYGNMENQEYDVDFGIQSDGEFRPPIRRGSSGRGRALRGKRIARGGVKTKVFKGELKAPLKKWNTKKLQPGLDQMPPEQPEQLPEGAEQPSQRPGPVQHPNQKLPPQPNQRPTITTQRPILRLPKPAHVFRNLNFDLVDKSDIFSTFGIEIIKWAGFHAIKTDAEFSRLFGALFELETETCAKMLASFKCSLKPEHRDYCFFTIKSLQHAALKTPKVDNEFLNMLLDKGAVKTKNCFFEIIKPFDKYIMRLQDRLLKGVTPLLMACNAYELSIKTSGFGNPREMASAFETTVSLCRKSLALLGQTFALASVFRQEKILEAVGLQEMAPAPTLFPNFDDSTLFGREYIENLKAWLEKSGYPIQMKKTEQESTEPLKKPSPDPKVPQRADRKVVETIEELVTSIVSGTLSAKERTAQKNCPEYWFLSDEDSLEYKYYRLRLSEMQRRTSPGTEVGVEGRTLEGSAAEAVRAMLYARKVASIKRRLFKRKRLGISTHRGARGRKGRRASTGTQTVLSAGTVLKHQDKHLQGSVQAKPSASEPSLCEKSPALDATSPSQCAAGSEVSLPAEERADSEGFSAPPDLLPPLPSQFPDVDAKTMETAEKLAKFVAQVGPEIEQFSIDNSTDNPDLWFLQDRNSSAFKFYRMKVYELCPSINFSAVSEATDAGESAKPEERNLDISEEEEDEEEEEEEDNEEEAEFEEDISQPLEGIDMEQAEEGEEDDMSAGRSVENLAEEMISKPGEEMSPGEVQLAASSDGAVPNLSTQASAPAPGTPFPRKRISSKSLKVGMIPASKRICLIEEPKVHEPVRIAYDRPRGCPVTKKKKKPKDLEFSHKKLTNRNVGFQMLQKMGWQEGHGLGTRGKGIREPVKVGATSAGEGLGVAGEENKEDAFDVFRQRMIQMYRQKRASK
SIO_010081: SUGP2
subclass of: SO_0000673
so part of: SUGP2
location: join(554217..554331,555445..557121,558028..558145,558819..559327,559508..559619,560409..560929,561799..561863,562434..562570,565816..565936)
location: region:554217-565936:1
so has part: feature:554217-554331:1:exon
so has part: feature:555445-557121:1:exon
so has part: feature:558028-558145:1:exon
so has part: feature:558819-559327:1:exon
so has part: feature:559508-559619:1:exon
so has part: feature:560409-560929:1:exon
so has part: feature:561799-561863:1:exon
so has part: feature:562434-562570:1:exon
so has part: feature:565816-565936:1:exon

XP_030365133.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:554217-554331:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:555445-557121:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:558028-558145:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:558819-559327:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:559508-559619:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:560409-560929:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:561799-561863:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:562434-562570:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:565816-565936:1:exon

LOC115618097
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: LOC115618097
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 571541..580852
location: region:571541-580852:1
so has part: feature:571541-580852:1:exon
subclass of: SO_0000010

115618097
type: Gene
SIO_000068: ncbigene

position:571541:1
position: 571541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:580852:1
position: 580852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:571541-580852:1:exon

LOC115618097
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: LOC115618097
product: semaphorin-4D-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030509277.1
SIO_010081: LOC115618097
subclass of: SO_0000673
so part of: LOC115618097
location: join(571541..571573,572985..573276,573660..573805,574136..574195,574366..574464,574632..574731,574907..575017,575379..575530,575851..576026,577410..577566,577876..578098,578557..578672,579115..579281,579467..579519,579950..580852)
location: region:571541-580852:1
so has part: feature:571541-571573:1:exon
so has part: feature:572985-573276:1:exon
so has part: feature:573660-573805:1:exon
so has part: feature:574136-574195:1:exon
so has part: feature:574366-574464:1:exon
so has part: feature:574632-574731:1:exon
so has part: feature:574907-575017:1:exon
so has part: feature:575379-575530:1:exon
so has part: feature:575851-576026:1:exon
so has part: feature:577410-577566:1:exon
so has part: feature:577876-578098:1:exon
so has part: feature:578557-578672:1:exon
so has part: feature:579115-579281:1:exon
so has part: feature:579467-579519:1:exon
so has part: feature:579950-580852:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:571541-571573:1:exon

position:571573:1
position: 571573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:572985-573276:1:exon

position:572985:1
position: 572985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:573276:1
position: 573276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:573660-573805:1:exon

position:573660:1
position: 573660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:573805:1
position: 573805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:574136-574195:1:exon

position:574136:1
position: 574136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:574195:1
position: 574195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:574366-574464:1:exon

position:574366:1
position: 574366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:574464:1
position: 574464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:574632-574731:1:exon

position:574632:1
position: 574632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:574731:1
position: 574731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:574907-575017:1:exon

position:574907:1
position: 574907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:575017:1
position: 575017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:575379-575530:1:exon

position:575379:1
position: 575379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:575530:1
position: 575530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:575851-576026:1:exon

position:575851:1
position: 575851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:576026:1
position: 576026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:577410-577566:1:exon

position:577410:1
position: 577410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:577566:1
position: 577566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:577876-578098:1:exon

position:577876:1
position: 577876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:578098:1
position: 578098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:578557-578672:1:exon

position:578557:1
position: 578557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:578672:1
position: 578672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:579115-579281:1:exon

position:579115:1
position: 579115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:579281:1
position: 579281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:579467-579519:1:exon

position:579467:1
position: 579467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:579519:1
position: 579519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:579950-580852:1:exon

position:579950:1
position: 579950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115618097
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: LOC115618097
product: semaphorin-4D-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030509278.1
SIO_010081: LOC115618097
subclass of: SO_0000673
so part of: LOC115618097
location: join(572943..573276,573660..573805,574366..574464,574632..574731,574907..575017,575379..575530,575851..576026,577410..577566,577876..578098,578557..578672,579115..579281,579467..579519,579950..580852)
location: region:572943-580852:1
so has part: feature:572943-573276:1:exon
so has part: feature:573660-573805:1:exon
so has part: feature:574366-574464:1:exon
so has part: feature:574632-574731:1:exon
so has part: feature:574907-575017:1:exon
so has part: feature:575379-575530:1:exon
so has part: feature:575851-576026:1:exon
so has part: feature:577410-577566:1:exon
so has part: feature:577876-578098:1:exon
so has part: feature:578557-578672:1:exon
so has part: feature:579115-579281:1:exon
so has part: feature:579467-579519:1:exon
so has part: feature:579950-580852:1:exon

position:572943:1
position: 572943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:572943-573276:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:573660-573805:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:574366-574464:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:574632-574731:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:574907-575017:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:575379-575530:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:575851-576026:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:577410-577566:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:577876-578098:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:578557-578672:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:579115-579281:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:579467-579519:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:579950-580852:1:exon

LOC115618097
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: LOC115618097
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: semaphorin-4D-like isoform X1
translation: MGGTALVLYLILQLIQESKASVGNCIPRKTVKYQTGNITTFREEALANISTLLVNEETNTLFVGGRDVVFALDLNNISREIARESWFATQERQLECIRRGKDKIRCQNYILCLHKINASYLYVCGTNAYHPTCDYMVIHGTNISLQGRAEESRGKCPFEPTQKYASVFVAGEFYSATSNNFLGTEPIILRSMRNPVRTEFKTSWLNEPSFVSMEIVQESESNPNGDDDKIYVVFTETAVEFEFYDKLLVSRIARVCRGDLGGKRVLQRRWTSFLKSRLSCSIPELNFHFNIVQDIFLLRKRRWQDSIFYGIFSQQWGRLDISAVCAYSMKTIQEVFSKGSYKGPVTVQHSPVKWMVYRGEVPVPRPGACIDNSARSMGYNTSTDLPDKVLQFVRDHPLMDDSVNPIGDSPVLLRRGSNYTRIVVDRVTGLDRQTYDVMFLGTDDGYLHKALNCDGEMFIVEELQLFLAPEPVQSLQLSSEKGMLYGGSHSQVVQLPVCQCHRYRYCTDCILARDPYCAWAPAAHGCVSLAEQTARPMHLIQSVKAGDASSCLSGENSVRKIPFTLGNNVHLKCAPLSNLASVVWKFNGSRIQAEASKYLLYDGGMAILNVTADVAGFYDCLSVEKSKGKEFPVTVARYALYAQEKPEKANIVATANKHKEAEAVGFQSSVPAPSLKQAAKQESADREREKLILKLLGAGFALLVFILLVLSFHKSHLSLPWKSRETSPNPTGRAGSGSPALAAEGL
SIO_010081: LOC115618097
subclass of: SO_0000673
so part of: LOC115618097
location: join(573174..573276,573660..573805,574136..574195,574366..574464,574632..574731,574907..575017,575379..575530,575851..576026,577410..577566,577876..578098,578557..578672,579115..579281,579467..579519,579950..580527)
location: region:573174-580527:1
so has part: feature:573174-573276:1:exon
so has part: feature:573660-573805:1:exon
so has part: feature:574136-574195:1:exon
so has part: feature:574366-574464:1:exon
so has part: feature:574632-574731:1:exon
so has part: feature:574907-575017:1:exon
so has part: feature:575379-575530:1:exon
so has part: feature:575851-576026:1:exon
so has part: feature:577410-577566:1:exon
so has part: feature:577876-578098:1:exon
so has part: feature:578557-578672:1:exon
so has part: feature:579115-579281:1:exon
so has part: feature:579467-579519:1:exon
so has part: feature:579950-580527:1:exon

XP_030365137.1
type: Protein
SIO_000068: ncbiprotein

position:573174:1
position: 573174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:580527:1
position: 580527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:573174-573276:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:573660-573805:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:574136-574195:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:574366-574464:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:574632-574731:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:574907-575017:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:575379-575530:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:575851-576026:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:577410-577566:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:577876-578098:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:578557-578672:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:579115-579281:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:579467-579519:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:579950-580527:1:exon

LOC115618097
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: LOC115618097
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: semaphorin-4D-like isoform X2
translation: MGGTALVLYLILQLIQESKASVGNCIPRKTVKYQTGNITTFREEALANISTLLVNEETNTLFVGGRDVVFALDLNNISREIARIRCQNYILCLHKINASYLYVCGTNAYHPTCDYMVIHGTNISLQGRAEESRGKCPFEPTQKYASVFVAGEFYSATSNNFLGTEPIILRSMRNPVRTEFKTSWLNEPSFVSMEIVQESESNPNGDDDKIYVVFTETAVEFEFYDKLLVSRIARVCRGDLGGKRVLQRRWTSFLKSRLSCSIPELNFHFNIVQDIFLLRKRRWQDSIFYGIFSQQWGRLDISAVCAYSMKTIQEVFSKGSYKGPVTVQHSPVKWMVYRGEVPVPRPGACIDNSARSMGYNTSTDLPDKVLQFVRDHPLMDDSVNPIGDSPVLLRRGSNYTRIVVDRVTGLDRQTYDVMFLGTDDGYLHKALNCDGEMFIVEELQLFLAPEPVQSLQLSSEKGMLYGGSHSQVVQLPVCQCHRYRYCTDCILARDPYCAWAPAAHGCVSLAEQTARPMHLIQSVKAGDASSCLSGENSVRKIPFTLGNNVHLKCAPLSNLASVVWKFNGSRIQAEASKYLLYDGGMAILNVTADVAGFYDCLSVEKSKGKEFPVTVARYALYAQEKPEKANIVATANKHKEAEAVGFQSSVPAPSLKQAAKQESADREREKLILKLLGAGFALLVFILLVLSFHKSHLSLPWKSRETSPNPTGRAGSGSPALAAEGL
SIO_010081: LOC115618097
subclass of: SO_0000673
so part of: LOC115618097
location: join(573174..573276,573660..573805,574366..574464,574632..574731,574907..575017,575379..575530,575851..576026,577410..577566,577876..578098,578557..578672,579115..579281,579467..579519,579950..580527)
location: region:573174-580527:1
so has part: feature:573174-573276:1:exon
so has part: feature:573660-573805:1:exon
so has part: feature:574366-574464:1:exon
so has part: feature:574632-574731:1:exon
so has part: feature:574907-575017:1:exon
so has part: feature:575379-575530:1:exon
so has part: feature:575851-576026:1:exon
so has part: feature:577410-577566:1:exon
so has part: feature:577876-578098:1:exon
so has part: feature:578557-578672:1:exon
so has part: feature:579115-579281:1:exon
so has part: feature:579467-579519:1:exon
so has part: feature:579950-580527:1:exon

XP_030365138.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:573174-573276:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:573660-573805:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:574366-574464:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:574632-574731:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:574907-575017:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:575379-575530:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:575851-576026:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:577410-577566:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:577876-578098:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:578557-578672:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:579115-579281:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:579467-579519:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:579950-580527:1:exon

LOC115618098
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: LOC115618098
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 592364..605439
location: region:592364-605439:1
so has part: feature:592364-605439:1:exon
subclass of: SO_0000010

115618098
type: Gene
SIO_000068: ncbigene

position:592364:1
position: 592364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:605439:1
position: 605439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:592364-605439:1:exon

LOC115618098
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: LOC115618098
product: homer protein homolog 3-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 long SRA reads, 36 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030509279.1
SIO_010081: LOC115618098
subclass of: SO_0000673
so part of: LOC115618098
location: join(592364..592602,594491..594647,595507..595638,596067..596174,599376..599497,600415..600571,601954..602061,602240..602320,603176..605439)
location: region:592364-605439:1
so has part: feature:592364-592602:1:exon
so has part: feature:594491-594647:1:exon
so has part: feature:595507-595638:1:exon
so has part: feature:596067-596174:1:exon
so has part: feature:599376-599497:1:exon
so has part: feature:600415-600571:1:exon
so has part: feature:601954-602061:1:exon
so has part: feature:602240-602320:1:exon
so has part: feature:603176-605439:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:592364-592602:1:exon

position:592602:1
position: 592602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:594491-594647:1:exon

position:594491:1
position: 594491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:594647:1
position: 594647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:595507-595638:1:exon

position:595507:1
position: 595507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:595638:1
position: 595638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:596067-596174:1:exon

position:596067:1
position: 596067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:596174:1
position: 596174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:599376-599497:1:exon

position:599376:1
position: 599376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:599497:1
position: 599497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:600415-600571:1:exon

position:600415:1
position: 600415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:600571:1
position: 600571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:601954-602061:1:exon

position:601954:1
position: 601954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:602061:1
position: 602061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:602240-602320:1:exon

position:602240:1
position: 602240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:602320:1
position: 602320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:603176-605439:1:exon

position:603176:1
position: 603176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115618098
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: LOC115618098
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homer protein homolog 3-like
translation: MSPTREQPIFSTRAHVFQIDPATKRNWIPASKHALTVSYFYDATRNVYRIISVGGTKAIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFASEQHLSQFAEKFQEVKEAARLAREKSQDKTELTNPALNIASHQVLPSPIISSNGPGEDKLFRSQSADVEVTTEKERLKKMLSEGSVSEVQWEAEFFSLQDNNNKLVAALHEANANVDQWKKQLAAYQEETETLRQRQKLESQGTQDSSSENNKEELSQTLEELELLIKAKDEEIQMLKSQKCGRWEAEGEREETLQKLQELETRNAELEQRLHLAEQTLAETLAEREKIQNEVTKVAEIMDVKIFELSEIRQGLAKLVERQLSSSTLRGDTSRGGEPELGQSQNIEVCWGRTCQHTSSCLDSVETSHSHLLPPEHPGRGQRAPELLNPPQGASTNHSQTSLDPAMAVAWSRESGCARAALPAPCCRTVSPTVVRFQGEGAEQPVQVFSSLVLGNHLPFANKLPGVFPPGQGAAVLAHQEQELLLFLFPSPNYIMSFQQDPVTLPEVAVSPLQRRVLALTVCPFHCSVASSREEGAAGFKALISSPQWDVMTC
SIO_010081: LOC115618098
subclass of: SO_0000673
so part of: LOC115618098
location: join(592589..592602,594491..594647,595507..595638,596067..596174,599376..599497,600415..600571,601954..602061,602240..602320,603176..604057)
location: region:592589-604057:1
so has part: feature:592589-592602:1:exon
so has part: feature:594491-594647:1:exon
so has part: feature:595507-595638:1:exon
so has part: feature:596067-596174:1:exon
so has part: feature:599376-599497:1:exon
so has part: feature:600415-600571:1:exon
so has part: feature:601954-602061:1:exon
so has part: feature:602240-602320:1:exon
so has part: feature:603176-604057:1:exon

XP_030365139.1
type: Protein
SIO_000068: ncbiprotein

position:592589:1
position: 592589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:604057:1
position: 604057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:592589-592602:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:594491-594647:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:595507-595638:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:596067-596174:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:599376-599497:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:600415-600571:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:601954-602061:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:602240-602320:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:603176-604057:1:exon

LOC115618307
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: LOC115618307
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 615394..626518
location: region:615394-626518:1
so has part: feature:615394-626518:1:exon
subclass of: SO_0000010

115618307
type: Gene
SIO_000068: ncbigene

position:615394:1
position: 615394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:626518:1
position: 626518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:615394-626518:1:exon

LOC115618307
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: LOC115618307
product: homer protein homolog 3-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 79 long SRA reads, 37 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_030509746.1
SIO_010081: LOC115618307
subclass of: SO_0000673
so part of: LOC115618307
location: join(615394..615729,616589..616720,617149..617256,620457..620578,621497..621653,623030..623140,623321..623401,624257..626518)
location: region:615394-626518:1
so has part: feature:615394-615729:1:exon
so has part: feature:616589-616720:1:exon
so has part: feature:617149-617256:1:exon
so has part: feature:620457-620578:1:exon
so has part: feature:621497-621653:1:exon
so has part: feature:623030-623140:1:exon
so has part: feature:623321-623401:1:exon
so has part: feature:624257-626518:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:615394-615729:1:exon

position:615729:1
position: 615729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:616589-616720:1:exon

position:616589:1
position: 616589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:616720:1
position: 616720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:617149-617256:1:exon

position:617149:1
position: 617149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:617256:1
position: 617256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:620457-620578:1:exon

position:620457:1
position: 620457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:620578:1
position: 620578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:621497-621653:1:exon

position:621497:1
position: 621497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:621653:1
position: 621653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:623030-623140:1:exon

position:623030:1
position: 623030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:623140:1
position: 623140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:623321-623401:1:exon

position:623321:1
position: 623321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:623401:1
position: 623401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:624257-626518:1:exon

position:624257:1
position: 624257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115618307
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: LOC115618307
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homer protein homolog 3-like
translation: MLCPWGLPCLAPPASDPCREARSRSAAGGASFSPSARKSALFPCCSAPLCPDSPVCFSCREQPIFSTRAHVFQIDPATKRNWIPASKHALTVSYFYDATRNVYRIISVGGTKAIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFASEQHLSQFAEKFQEVKEAARLAREKSQDKTELTNPALNIASHQVLPSPIISSNGPGEDKLFRSQSADVEVTTEKERLKKMLSEGSVSEVQWEAEFFSLQDNNNKLVAALHEANANVDQWKKQLAAYQEETETLRQRVAELESQGTQDSSSENNKEELSQTLEELELLIKAKDEEIQMLKSQKCGRWEAEGEREETLQKLQELETRNAELEQRLHLAEQTLAETLAEREKIQNEVTKVAEIMDVKIFELSEIRQGLAKLVESN
SIO_010081: LOC115618307
subclass of: SO_0000673
so part of: LOC115618307
location: join(615394..615729,616589..616720,617149..617256,620457..620578,621497..621653,623030..623140,623321..623401,624257..624445)
location: region:615394-624445:1
so has part: feature:615394-615729:1:exon
so has part: feature:616589-616720:1:exon
so has part: feature:617149-617256:1:exon
so has part: feature:620457-620578:1:exon
so has part: feature:621497-621653:1:exon
so has part: feature:623030-623140:1:exon
so has part: feature:623321-623401:1:exon
so has part: feature:624257-624445:1:exon

XP_030365606.1
type: Protein
SIO_000068: ncbiprotein

position:624445:1
position: 624445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:615394-615729:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:616589-616720:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:617149-617256:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:620457-620578:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:621497-621653:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:623030-623140:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:623321-623401:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:624257-624445:1:exon

DDX49
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: DDX49
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(631872..637848)
location: region:631872-637848:-1
so has part: feature:631872-637848:-1:exon
subclass of: SO_0000010

115618292
type: Gene
SIO_000068: ncbigene

position:631872:-1
position: 631872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:637848:-1
position: 637848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:631872-637848:-1:exon

DDX49
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: DDX49
product: DEAD-box helicase 49
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 71 long SRA reads, 17 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_030509714.1
SIO_010081: DDX49
subclass of: SO_0000673
so part of: DDX49
location: complement(join(631872..633248,633513..633584,633957..634045,634650..634724,635059..635156,635638..635714,635798..635873,636410..636550,636678..636865,636961..637082,637327..637412,637493..637616,637705..637848))
location: region:631872-637848:-1
so has part: feature:637705-637848:-1:exon
so has part: feature:637493-637616:-1:exon
so has part: feature:637327-637412:-1:exon
so has part: feature:636961-637082:-1:exon
so has part: feature:636678-636865:-1:exon
so has part: feature:636410-636550:-1:exon
so has part: feature:635798-635873:-1:exon
so has part: feature:635638-635714:-1:exon
so has part: feature:635059-635156:-1:exon
so has part: feature:634650-634724:-1:exon
so has part: feature:633957-634045:-1:exon
so has part: feature:633513-633584:-1:exon
so has part: feature:631872-633248:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:637705-637848:-1:exon

position:637705:-1
position: 637705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:637493-637616:-1:exon

position:637493:-1
position: 637493
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:637616:-1
position: 637616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:637327-637412:-1:exon

position:637327:-1
position: 637327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:637412:-1
position: 637412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:636961-637082:-1:exon

position:636961:-1
position: 636961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:637082:-1
position: 637082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:636678-636865:-1:exon

position:636678:-1
position: 636678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:636865:-1
position: 636865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:636410-636550:-1:exon

position:636410:-1
position: 636410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:636550:-1
position: 636550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:635798-635873:-1:exon

position:635798:-1
position: 635798
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:635873:-1
position: 635873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:635638-635714:-1:exon

position:635638:-1
position: 635638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:635714:-1
position: 635714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:635059-635156:-1:exon

position:635059:-1
position: 635059
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:635156:-1
position: 635156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:634650-634724:-1:exon

position:634650:-1
position: 634650
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:634724:-1
position: 634724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:633957-634045:-1:exon

position:633957:-1
position: 633957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:634045:-1
position: 634045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:633513-633584:-1:exon

position:633513:-1
position: 633513
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:633584:-1
position: 633584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:631872-633248:-1:exon

position:633248:-1
position: 633248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DDX49
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: DDX49
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: probable ATP-dependent RNA helicase DDX49
translation: MAGFRALGLAPWLAEQARHVGLARPTPVQAACIPAALQGRDCLGCAKTGSGKTAAFVLPVLQALSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKPHVVIATPGRLADHLRSSNTFSLKKLKFLILDEADRLLEQGCADFTADLEVILEAVPARRQTLLFSATLTDTLKELKSLAANRPFFWEAASEVRTVEELDQRYLLVPEAVKDAYLVHLVQTFQDEHEDWSIIIFTKTCKDCQVLNMMLRKYNFPSVALHSMMKQRQRFAALAKFKSSIFKILIATDVAARGLDIPAVQVVINHNTPGLPKIYIHRVGRTARAGRKGMAITLVTQYDIHLVHAIEEEIKLKLQEFSVEEKFVLDILTQVNVTRRECEIELEGMDFDEKKEINKRKQMILEGKDPDLEAKRKAELAKIKKKNRQCREKVQQVLQKRKQLQLKRKLQKKMERRNRRLKEEEEQPSA
SIO_010081: DDX49
subclass of: SO_0000673
so part of: DDX49
location: complement(join(633060..633248,633513..633584,633957..634045,634650..634724,635059..635156,635638..635714,635798..635873,636410..636550,636678..636865,636961..637082,637327..637412,637493..637616,637705..637819))
location: region:633060-637819:-1
so has part: feature:637705-637819:-1:exon
so has part: feature:637493-637616:-1:exon
so has part: feature:637327-637412:-1:exon
so has part: feature:636961-637082:-1:exon
so has part: feature:636678-636865:-1:exon
so has part: feature:636410-636550:-1:exon
so has part: feature:635798-635873:-1:exon
so has part: feature:635638-635714:-1:exon
so has part: feature:635059-635156:-1:exon
so has part: feature:634650-634724:-1:exon
so has part: feature:633957-634045:-1:exon
so has part: feature:633513-633584:-1:exon
so has part: feature:633060-633248:-1:exon

XP_030365574.1
type: Protein
SIO_000068: ncbiprotein

position:633060:-1
position: 633060
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:637819:-1
position: 637819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:637705-637819:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:637493-637616:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:637327-637412:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:636961-637082:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:636678-636865:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:636410-636550:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:635798-635873:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:635638-635714:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:635059-635156:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:634650-634724:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:633957-634045:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:633513-633584:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:633060-633248:-1:exon

COPE
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: COPE
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 637972..642877
location: region:637972-642877:1
so has part: feature:637972-642877:1:exon
subclass of: SO_0000010

115618308
type: Gene
SIO_000068: ncbigene

position:637972:1
position: 637972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:642877:1
position: 642877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:637972-642877:1:exon

COPE
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: COPE
product: COPI coat complex subunit epsilon
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 46 long SRA reads, and 93% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030509748.1
SIO_010081: COPE
subclass of: SO_0000673
so part of: COPE
location: join(637972..638141,638437..638499,638869..638969,639156..639308,639717..639770,640163..640244,641298..641453,641703..641780,642830..642877)
location: region:637972-642877:1
so has part: feature:637972-638141:1:exon
so has part: feature:638437-638499:1:exon
so has part: feature:638869-638969:1:exon
so has part: feature:639156-639308:1:exon
so has part: feature:639717-639770:1:exon
so has part: feature:640163-640244:1:exon
so has part: feature:641298-641453:1:exon
so has part: feature:641703-641780:1:exon
so has part: feature:642830-642877:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:637972-638141:1:exon

position:638141:1
position: 638141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:638437-638499:1:exon

position:638437:1
position: 638437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:638499:1
position: 638499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:638869-638969:1:exon

position:638869:1
position: 638869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:638969:1
position: 638969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:639156-639308:1:exon

position:639156:1
position: 639156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:639308:1
position: 639308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:639717-639770:1:exon

position:639717:1
position: 639717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:639770:1
position: 639770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:640163-640244:1:exon

position:640163:1
position: 640163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:640244:1
position: 640244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:641298-641453:1:exon

position:641298:1
position: 641298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:641453:1
position: 641453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:641703-641780:1:exon

position:641703:1
position: 641703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:641780:1
position: 641780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:642830-642877:1:exon

position:642830:1
position: 642830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

COPE
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: COPE
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coatomer subunit epsilon
translation: MAVAGPAGQAADADELFDVKNSFYIGAYQAAINEAQRVKASSPEKEVERDVFLFRAYIAQRKYGVVLDEIKASASPELQAVRMFAEYLSNESQRDAIVADLDKKMAKSVDVANTTFLLMAASIYFHDKNPDAALRTLHQGESLECMAMMIQILLKLDRLDLARKELKKMQEQDEDATLTQLATAWVNLAIGGEKLQDAYYIFQEMADKCSSTLLLLNGQAACYMAQGKWDDAEGVLQEALDKDSGHPETLINFVVLSQHLGKPPEVRPENDFDRLAVQYAPSA
SIO_010081: COPE
subclass of: SO_0000673
so part of: COPE
location: join(638025..638141,638437..638499,638869..638969,639156..639308,639717..639770,640163..640244,641298..641453,641703..641780,642830..642877)
location: region:638025-642877:1
so has part: feature:638025-638141:1:exon
so has part: feature:638437-638499:1:exon
so has part: feature:638869-638969:1:exon
so has part: feature:639156-639308:1:exon
so has part: feature:639717-639770:1:exon
so has part: feature:640163-640244:1:exon
so has part: feature:641298-641453:1:exon
so has part: feature:641703-641780:1:exon
so has part: feature:642830-642877:1:exon

XP_030365608.1
type: Protein
SIO_000068: ncbiprotein

position:638025:1
position: 638025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:638025-638141:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:638437-638499:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:638869-638969:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:639156-639308:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:639717-639770:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:640163-640244:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:641298-641453:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:641703-641780:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:642830-642877:1:exon

CERS1
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: CERS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 645102..663157
location: region:645102-663157:1
so has part: feature:645102-663157:1:exon
subclass of: SO_0000010

115618293
type: Gene
SIO_000068: ncbigene

position:645102:1
position: 645102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:663157:1
position: 663157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:645102-663157:1:exon

CERS1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: CERS1
product: ceramide synthase 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 373 long SRA reads, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030509715.1
SIO_010081: CERS1
subclass of: SO_0000673
so part of: CERS1
location: join(645102..645550,653604..653763,654394..654574,654901..655062,655939..656086,656674..656822,657241..663157)
location: region:645102-663157:1
so has part: feature:645102-645550:1:exon
so has part: feature:653604-653763:1:exon
so has part: feature:654394-654574:1:exon
so has part: feature:654901-655062:1:exon
so has part: feature:655939-656086:1:exon
so has part: feature:656674-656822:1:exon
so has part: feature:657241-663157:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:645102-645550:1:exon

position:645550:1
position: 645550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:653604-653763:1:exon

position:653604:1
position: 653604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:653763:1
position: 653763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:654394-654574:1:exon

position:654394:1
position: 654394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:654574:1
position: 654574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:654901-655062:1:exon

position:654901:1
position: 654901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:655062:1
position: 655062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:655939-656086:1:exon

position:655939:1
position: 655939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:656086:1
position: 656086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:656674-656822:1:exon

position:656674:1
position: 656674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:656822:1
position: 656822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:657241-663157:1:exon

position:657241:1
position: 657241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CERS1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: CERS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ceramide synthase 1
translation: MPGPEPMPGYGLLLRRGYGSLAAAARGCADCGWELSRRTWAENAHLGWGEVLLCALGALGWTALRRAAARSLFGPFGEWCNLRPKDAAKMPESAWKLLFYMISWSYGIYLLFFTDYPFFYDPPSVFYGWQKGMDVPTDIAIAYLMQCSFYGHSIYATAYMDTWRKDSVVMLLHHVITLTLIACSYAFRYHNVGILVFFLHDVNDIQLEFTKLNVYFKHRGGVYHRLNDVLSNIGCLTFSISWFWFRLYWFPLKVLYATCYSSLQSVPNIPFYFFFNALLLVLTLMNIYWFLYIVLFVAKVLMGQMQEVNDVREYDMEDSKKPTTAKKREAGLQLPSALKEGMHLKNGLVKNKRL
SIO_010081: CERS1
subclass of: SO_0000673
so part of: CERS1
location: join(645329..645550,653604..653763,654394..654574,654901..655062,655939..656086,656674..656822,657241..657283)
location: region:645329-657283:1
so has part: feature:645329-645550:1:exon
so has part: feature:653604-653763:1:exon
so has part: feature:654394-654574:1:exon
so has part: feature:654901-655062:1:exon
so has part: feature:655939-656086:1:exon
so has part: feature:656674-656822:1:exon
so has part: feature:657241-657283:1:exon

XP_030365575.1
type: Protein
SIO_000068: ncbiprotein

position:645329:1
position: 645329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:657283:1
position: 657283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:645329-645550:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:653604-653763:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:654394-654574:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:654901-655062:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:655939-656086:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:656674-656822:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:657241-657283:1:exon

GDF1
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: GDF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 659163..661294
location: region:659163-661294:1
so has part: feature:659163-661294:1:exon
subclass of: SO_0000010

115618294
type: Gene
SIO_000068: ncbigene

position:659163:1
position: 659163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:661294:1
position: 661294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:659163-661294:1:exon

GDF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: GDF1
product: growth differentiation factor 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030509716.1
SIO_010081: GDF1
subclass of: SO_0000673
so part of: GDF1
location: join(659163..659450,660400..661294)
location: region:659163-661294:1
so has part: feature:659163-659450:1:exon
so has part: feature:660400-661294:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:659163-659450:1:exon

position:659450:1
position: 659450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:660400-661294:1:exon

position:660400:1
position: 660400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GDF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: GDF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: embryonic growth/differentiation factor 1
translation: MWLLPSFQASLAWALLSAALATQLSLQESLLLKSLGLSTKPSPKTHGPVPCVLWRIFQRRKTLPSTSKDLGDACRVEEFNVPGNIIRVFADQGHFIHNGQPPRLLCLRKRLYFNLSVLEEDERLTMAQLEIKFSHNSYPSPSQGQGLELRLYRSSRLALQGTPAPERGQKLLVERSFVQLHKSLVFDLSGVAKDWRTHSRNLGLILEITESSGDGASALGSGGCTSINSFLDTSLLVVTLSQQQCRASRRRRRSAEPPPVTPSSLCKPRRLYISFSDVGWENWIIAPQGYLANYCLGECPFPLTAELNSTNHAILQTMVHSLDPEGTPQPCCVPVRLSPISILYYDNSDNVVLRHYEDMVVDECGCR
SIO_010081: GDF1
subclass of: SO_0000673
so part of: GDF1
location: join(659174..659450,660400..661226)
location: region:659174-661226:1
so has part: feature:659174-659450:1:exon
so has part: feature:660400-661226:1:exon

XP_030365576.1
type: Protein
SIO_000068: ncbiprotein

position:659174:1
position: 659174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:661226:1
position: 661226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:659174-659450:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:660400-661226:1:exon

UPF1
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: UPF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(663144..686689)
location: region:663144-686689:-1
so has part: feature:663144-686689:-1:exon
subclass of: SO_0000010

115618289
type: Gene
SIO_000068: ncbigene

position:663144:-1
position: 663144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:686689:-1
position: 686689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:663144-686689:-1:exon

UPF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: UPF1
product: UPF1 RNA helicase and ATPase, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 ESTs, 249 long SRA reads, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_030509707.1
SIO_010081: UPF1
subclass of: SO_0000673
so part of: UPF1
location: complement(join(663144..665583,666236..666453,667051..667212,667704..667785,668477..668651,669325..669467,670466..670622,672235..672352,672568..672781,673219..673362,673556..673670,673875..674039,674302..674420,674518..674677,675499..675616,675802..675900,676071..676155,676822..676983,677576..677765,678645..678812,679317..679406,679845..679987,686096..686689))
location: region:663144-686689:-1
so has part: feature:686096-686689:-1:exon
so has part: feature:679845-679987:-1:exon
so has part: feature:679317-679406:-1:exon
so has part: feature:678645-678812:-1:exon
so has part: feature:677576-677765:-1:exon
so has part: feature:676822-676983:-1:exon
so has part: feature:676071-676155:-1:exon
so has part: feature:675802-675900:-1:exon
so has part: feature:675499-675616:-1:exon
so has part: feature:674518-674677:-1:exon
so has part: feature:674302-674420:-1:exon
so has part: feature:673875-674039:-1:exon
so has part: feature:673556-673670:-1:exon
so has part: feature:673219-673362:-1:exon
so has part: feature:672568-672781:-1:exon
so has part: feature:672235-672352:-1:exon
so has part: feature:670466-670622:-1:exon
so has part: feature:669325-669467:-1:exon
so has part: feature:668477-668651:-1:exon
so has part: feature:667704-667785:-1:exon
so has part: feature:667051-667212:-1:exon
so has part: feature:666236-666453:-1:exon
so has part: feature:663144-665583:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:686096-686689:-1:exon

position:686096:-1
position: 686096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:679845-679987:-1:exon

position:679845:-1
position: 679845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:679987:-1
position: 679987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:679317-679406:-1:exon

position:679317:-1
position: 679317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:679406:-1
position: 679406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:678645-678812:-1:exon

position:678645:-1
position: 678645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:678812:-1
position: 678812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:677576-677765:-1:exon

position:677576:-1
position: 677576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:677765:-1
position: 677765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:676822-676983:-1:exon

position:676822:-1
position: 676822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:676983:-1
position: 676983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:676071-676155:-1:exon

position:676071:-1
position: 676071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:676155:-1
position: 676155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:675802-675900:-1:exon

position:675802:-1
position: 675802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:675900:-1
position: 675900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:675499-675616:-1:exon

position:675499:-1
position: 675499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:675616:-1
position: 675616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:674518-674677:-1:exon

position:674518:-1
position: 674518
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:674677:-1
position: 674677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:674302-674420:-1:exon

position:674302:-1
position: 674302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:674420:-1
position: 674420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:673875-674039:-1:exon

position:673875:-1
position: 673875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:674039:-1
position: 674039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:673556-673670:-1:exon

position:673556:-1
position: 673556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:673670:-1
position: 673670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:673219-673362:-1:exon

position:673219:-1
position: 673219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:673362:-1
position: 673362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:672568-672781:-1:exon

position:672568:-1
position: 672568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:672781:-1
position: 672781
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:672235-672352:-1:exon

position:672235:-1
position: 672235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:672352:-1
position: 672352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:670466-670622:-1:exon

position:670466:-1
position: 670466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:670622:-1
position: 670622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:669325-669467:-1:exon

position:669325:-1
position: 669325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:669467:-1
position: 669467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:668477-668651:-1:exon

position:668477:-1
position: 668477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:668651:-1
position: 668651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:667704-667785:-1:exon

position:667704:-1
position: 667704
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:667785:-1
position: 667785
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:667051-667212:-1:exon

position:667051:-1
position: 667051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:667212:-1
position: 667212
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:666236-666453:-1:exon

position:666236:-1
position: 666236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:666453:-1
position: 666453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:663144-665583:-1:exon

position:665583:-1
position: 665583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

UPF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: UPF1
product: UPF1 RNA helicase and ATPase, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 ESTs, 265 long SRA reads, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_030509703.1
SIO_010081: UPF1
subclass of: SO_0000673
so part of: UPF1
location: complement(join(663144..665583,665694..665816,666236..666453,667051..667212,667704..667785,668477..668651,669325..669467,670466..670622,672235..672352,672568..672781,673219..673362,673556..673670,673875..674039,674302..674420,674518..674677,675499..675616,675802..675900,676071..676155,676822..676983,677576..677765,678645..678812,679317..679406,679845..679987,686096..686689))
location: region:663144-686689:-1
so has part: feature:686096-686689:-1:exon
so has part: feature:679845-679987:-1:exon
so has part: feature:679317-679406:-1:exon
so has part: feature:678645-678812:-1:exon
so has part: feature:677576-677765:-1:exon
so has part: feature:676822-676983:-1:exon
so has part: feature:676071-676155:-1:exon
so has part: feature:675802-675900:-1:exon
so has part: feature:675499-675616:-1:exon
so has part: feature:674518-674677:-1:exon
so has part: feature:674302-674420:-1:exon
so has part: feature:673875-674039:-1:exon
so has part: feature:673556-673670:-1:exon
so has part: feature:673219-673362:-1:exon
so has part: feature:672568-672781:-1:exon
so has part: feature:672235-672352:-1:exon
so has part: feature:670466-670622:-1:exon
so has part: feature:669325-669467:-1:exon
so has part: feature:668477-668651:-1:exon
so has part: feature:667704-667785:-1:exon
so has part: feature:667051-667212:-1:exon
so has part: feature:666236-666453:-1:exon
so has part: feature:665694-665816:-1:exon
so has part: feature:663144-665583:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:686096-686689:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:679845-679987:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:679317-679406:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:678645-678812:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:677576-677765:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:676822-676983:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:676071-676155:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:675802-675900:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:675499-675616:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:674518-674677:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:674302-674420:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:673875-674039:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:673556-673670:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:673219-673362:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:672568-672781:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:672235-672352:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:670466-670622:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:669325-669467:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:668477-668651:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:667704-667785:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:667051-667212:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:666236-666453:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:665694-665816:-1:exon

position:665694:-1
position: 665694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:665816:-1
position: 665816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:663144-665583:-1:exon

UPF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: UPF1
product: UPF1 RNA helicase and ATPase, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 ESTs, 197 long SRA reads, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_030509705.1
SIO_010081: UPF1
subclass of: SO_0000673
so part of: UPF1
location: complement(join(663675..665583,665694..665816,666236..666453,667051..667212,667704..667785,668477..668651,669325..669467,670466..670622,672235..672352,672568..672781,673219..673362,673556..673670,673875..674039,674302..674420,674518..674677,675499..675616,675802..675900,676071..676155,676822..676983,677576..677756,678645..678812,679317..679406,679845..679987,686096..686689))
location: region:663675-686689:-1
so has part: feature:686096-686689:-1:exon
so has part: feature:679845-679987:-1:exon
so has part: feature:679317-679406:-1:exon
so has part: feature:678645-678812:-1:exon
so has part: feature:677576-677756:-1:exon
so has part: feature:676822-676983:-1:exon
so has part: feature:676071-676155:-1:exon
so has part: feature:675802-675900:-1:exon
so has part: feature:675499-675616:-1:exon
so has part: feature:674518-674677:-1:exon
so has part: feature:674302-674420:-1:exon
so has part: feature:673875-674039:-1:exon
so has part: feature:673556-673670:-1:exon
so has part: feature:673219-673362:-1:exon
so has part: feature:672568-672781:-1:exon
so has part: feature:672235-672352:-1:exon
so has part: feature:670466-670622:-1:exon
so has part: feature:669325-669467:-1:exon
so has part: feature:668477-668651:-1:exon
so has part: feature:667704-667785:-1:exon
so has part: feature:667051-667212:-1:exon
so has part: feature:666236-666453:-1:exon
so has part: feature:665694-665816:-1:exon
so has part: feature:663675-665583:-1:exon

position:663675:-1
position: 663675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:686096-686689:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:679845-679987:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:679317-679406:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:678645-678812:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:677576-677756:-1:exon

position:677756:-1
position: 677756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:676822-676983:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:676071-676155:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:675802-675900:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:675499-675616:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:674518-674677:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:674302-674420:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:673875-674039:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:673556-673670:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:673219-673362:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:672568-672781:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:672235-672352:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:670466-670622:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:669325-669467:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:668477-668651:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:667704-667785:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:667051-667212:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:666236-666453:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:665694-665816:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:663675-665583:-1:exon

UPF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: UPF1
product: UPF1 RNA helicase and ATPase, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 ESTs, 73 long SRA reads, 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_030509706.1
SIO_010081: UPF1
subclass of: SO_0000673
so part of: UPF1
location: complement(join(664455..665583,665694..665816,666236..666453,667051..667212,667704..667785,668477..668651,669325..669467,670466..670622,672235..672352,672568..672781,673219..673362,673556..673670,673875..674039,674302..674420,674518..674677,675499..675607,675802..675900,676071..676155,676822..676983,677576..677756,678645..678812,679317..679406,679845..679987,686096..686689))
location: region:664455-686689:-1
so has part: feature:686096-686689:-1:exon
so has part: feature:679845-679987:-1:exon
so has part: feature:679317-679406:-1:exon
so has part: feature:678645-678812:-1:exon
so has part: feature:677576-677756:-1:exon
so has part: feature:676822-676983:-1:exon
so has part: feature:676071-676155:-1:exon
so has part: feature:675802-675900:-1:exon
so has part: feature:675499-675607:-1:exon
so has part: feature:674518-674677:-1:exon
so has part: feature:674302-674420:-1:exon
so has part: feature:673875-674039:-1:exon
so has part: feature:673556-673670:-1:exon
so has part: feature:673219-673362:-1:exon
so has part: feature:672568-672781:-1:exon
so has part: feature:672235-672352:-1:exon
so has part: feature:670466-670622:-1:exon
so has part: feature:669325-669467:-1:exon
so has part: feature:668477-668651:-1:exon
so has part: feature:667704-667785:-1:exon
so has part: feature:667051-667212:-1:exon
so has part: feature:666236-666453:-1:exon
so has part: feature:665694-665816:-1:exon
so has part: feature:664455-665583:-1:exon

position:664455:-1
position: 664455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:686096-686689:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:679845-679987:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:679317-679406:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:678645-678812:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:677576-677756:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:676822-676983:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:676071-676155:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:675802-675900:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:675499-675607:-1:exon

position:675607:-1
position: 675607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:674518-674677:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:674302-674420:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:673875-674039:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:673556-673670:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:673219-673362:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:672568-672781:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:672235-672352:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:670466-670622:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:669325-669467:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:668477-668651:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:667704-667785:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:667051-667212:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:666236-666453:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:665694-665816:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:664455-665583:-1:exon

UPF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: UPF1
product: UPF1 RNA helicase and ATPase, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 ESTs, 70 long SRA reads, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_030509704.1
SIO_010081: UPF1
subclass of: SO_0000673
so part of: UPF1
location: complement(join(664455..665583,665694..665816,666236..666453,667051..667212,667704..667785,668477..668651,669325..669467,670466..670622,672235..672352,672568..672781,673219..673362,673556..673670,673875..674039,674302..674420,674518..674677,675499..675607,675802..675900,676071..676155,676822..676983,677576..677765,678645..678812,679317..679406,679845..679987,686096..686689))
location: region:664455-686689:-1
so has part: feature:686096-686689:-1:exon
so has part: feature:679845-679987:-1:exon
so has part: feature:679317-679406:-1:exon
so has part: feature:678645-678812:-1:exon
so has part: feature:677576-677765:-1:exon
so has part: feature:676822-676983:-1:exon
so has part: feature:676071-676155:-1:exon
so has part: feature:675802-675900:-1:exon
so has part: feature:675499-675607:-1:exon
so has part: feature:674518-674677:-1:exon
so has part: feature:674302-674420:-1:exon
so has part: feature:673875-674039:-1:exon
so has part: feature:673556-673670:-1:exon
so has part: feature:673219-673362:-1:exon
so has part: feature:672568-672781:-1:exon
so has part: feature:672235-672352:-1:exon
so has part: feature:670466-670622:-1:exon
so has part: feature:669325-669467:-1:exon
so has part: feature:668477-668651:-1:exon
so has part: feature:667704-667785:-1:exon
so has part: feature:667051-667212:-1:exon
so has part: feature:666236-666453:-1:exon
so has part: feature:665694-665816:-1:exon
so has part: feature:664455-665583:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:686096-686689:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:679845-679987:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:679317-679406:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:678645-678812:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:677576-677765:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:676822-676983:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:676071-676155:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:675802-675900:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:675499-675607:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:674518-674677:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:674302-674420:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:673875-674039:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:673556-673670:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:673219-673362:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:672568-672781:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:672235-672352:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:670466-670622:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:669325-669467:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:668477-668651:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:667704-667785:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:667051-667212:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:666236-666453:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:665694-665816:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:664455-665583:-1:exon

UPF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: UPF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: regulator of nonsense transcripts 1 isoform X5
translation: MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQGQGPPGAGQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQVEEEELSLCGA
SIO_010081: UPF1
subclass of: SO_0000673
so part of: UPF1
location: complement(join(665548..665583,666236..666453,667051..667212,667704..667785,668477..668651,669325..669467,670466..670622,672235..672352,672568..672781,673219..673362,673556..673670,673875..674039,674302..674420,674518..674677,675499..675616,675802..675900,676071..676155,676822..676983,677576..677765,678645..678812,679317..679406,679845..679987,686096..686320))
location: region:665548-686320:-1
so has part: feature:686096-686320:-1:exon
so has part: feature:679845-679987:-1:exon
so has part: feature:679317-679406:-1:exon
so has part: feature:678645-678812:-1:exon
so has part: feature:677576-677765:-1:exon
so has part: feature:676822-676983:-1:exon
so has part: feature:676071-676155:-1:exon
so has part: feature:675802-675900:-1:exon
so has part: feature:675499-675616:-1:exon
so has part: feature:674518-674677:-1:exon
so has part: feature:674302-674420:-1:exon
so has part: feature:673875-674039:-1:exon
so has part: feature:673556-673670:-1:exon
so has part: feature:673219-673362:-1:exon
so has part: feature:672568-672781:-1:exon
so has part: feature:672235-672352:-1:exon
so has part: feature:670466-670622:-1:exon
so has part: feature:669325-669467:-1:exon
so has part: feature:668477-668651:-1:exon
so has part: feature:667704-667785:-1:exon
so has part: feature:667051-667212:-1:exon
so has part: feature:666236-666453:-1:exon
so has part: feature:665548-665583:-1:exon

XP_030365567.1
type: Protein
SIO_000068: ncbiprotein

position:665548:-1
position: 665548
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:686320:-1
position: 686320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:686096-686320:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:679845-679987:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:679317-679406:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:678645-678812:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:677576-677765:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:676822-676983:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:676071-676155:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:675802-675900:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:675499-675616:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:674518-674677:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:674302-674420:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:673875-674039:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:673556-673670:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:673219-673362:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:672568-672781:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:672235-672352:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:670466-670622:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:669325-669467:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:668477-668651:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:667704-667785:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:667051-667212:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:666236-666453:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:665548-665583:-1:exon

UPF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: UPF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: regulator of nonsense transcripts 1 isoform X4
translation: MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQGQGPPGAGQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
SIO_010081: UPF1
subclass of: SO_0000673
so part of: UPF1
location: complement(join(665697..665816,666236..666453,667051..667212,667704..667785,668477..668651,669325..669467,670466..670622,672235..672352,672568..672781,673219..673362,673556..673670,673875..674039,674302..674420,674518..674677,675499..675607,675802..675900,676071..676155,676822..676983,677576..677756,678645..678812,679317..679406,679845..679987,686096..686320))
location: region:665697-686320:-1
so has part: feature:686096-686320:-1:exon
so has part: feature:679845-679987:-1:exon
so has part: feature:679317-679406:-1:exon
so has part: feature:678645-678812:-1:exon
so has part: feature:677576-677756:-1:exon
so has part: feature:676822-676983:-1:exon
so has part: feature:676071-676155:-1:exon
so has part: feature:675802-675900:-1:exon
so has part: feature:675499-675607:-1:exon
so has part: feature:674518-674677:-1:exon
so has part: feature:674302-674420:-1:exon
so has part: feature:673875-674039:-1:exon
so has part: feature:673556-673670:-1:exon
so has part: feature:673219-673362:-1:exon
so has part: feature:672568-672781:-1:exon
so has part: feature:672235-672352:-1:exon
so has part: feature:670466-670622:-1:exon
so has part: feature:669325-669467:-1:exon
so has part: feature:668477-668651:-1:exon
so has part: feature:667704-667785:-1:exon
so has part: feature:667051-667212:-1:exon
so has part: feature:666236-666453:-1:exon
so has part: feature:665697-665816:-1:exon

XP_030365566.1
type: Protein
SIO_000068: ncbiprotein

position:665697:-1
position: 665697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:686096-686320:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:679845-679987:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:679317-679406:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:678645-678812:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:677576-677756:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:676822-676983:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:676071-676155:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:675802-675900:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:675499-675607:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:674518-674677:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:674302-674420:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:673875-674039:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:673556-673670:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:673219-673362:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:672568-672781:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:672235-672352:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:670466-670622:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:669325-669467:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:668477-668651:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:667704-667785:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:667051-667212:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:666236-666453:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:665697-665816:-1:exon

UPF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: UPF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: regulator of nonsense transcripts 1 isoform X3
translation: MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQGQGPPGAGQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
SIO_010081: UPF1
subclass of: SO_0000673
so part of: UPF1
location: complement(join(665697..665816,666236..666453,667051..667212,667704..667785,668477..668651,669325..669467,670466..670622,672235..672352,672568..672781,673219..673362,673556..673670,673875..674039,674302..674420,674518..674677,675499..675616,675802..675900,676071..676155,676822..676983,677576..677756,678645..678812,679317..679406,679845..679987,686096..686320))
location: region:665697-686320:-1
so has part: feature:686096-686320:-1:exon
so has part: feature:679845-679987:-1:exon
so has part: feature:679317-679406:-1:exon
so has part: feature:678645-678812:-1:exon
so has part: feature:677576-677756:-1:exon
so has part: feature:676822-676983:-1:exon
so has part: feature:676071-676155:-1:exon
so has part: feature:675802-675900:-1:exon
so has part: feature:675499-675616:-1:exon
so has part: feature:674518-674677:-1:exon
so has part: feature:674302-674420:-1:exon
so has part: feature:673875-674039:-1:exon
so has part: feature:673556-673670:-1:exon
so has part: feature:673219-673362:-1:exon
so has part: feature:672568-672781:-1:exon
so has part: feature:672235-672352:-1:exon
so has part: feature:670466-670622:-1:exon
so has part: feature:669325-669467:-1:exon
so has part: feature:668477-668651:-1:exon
so has part: feature:667704-667785:-1:exon
so has part: feature:667051-667212:-1:exon
so has part: feature:666236-666453:-1:exon
so has part: feature:665697-665816:-1:exon

XP_030365565.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:686096-686320:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:679845-679987:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:679317-679406:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:678645-678812:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:677576-677756:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:676822-676983:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:676071-676155:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:675802-675900:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:675499-675616:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:674518-674677:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:674302-674420:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:673875-674039:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:673556-673670:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:673219-673362:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:672568-672781:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:672235-672352:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:670466-670622:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:669325-669467:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:668477-668651:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:667704-667785:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:667051-667212:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:666236-666453:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:665697-665816:-1:exon

UPF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: UPF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: regulator of nonsense transcripts 1 isoform X2
translation: MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQGQGPPGAGQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
SIO_010081: UPF1
subclass of: SO_0000673
so part of: UPF1
location: complement(join(665697..665816,666236..666453,667051..667212,667704..667785,668477..668651,669325..669467,670466..670622,672235..672352,672568..672781,673219..673362,673556..673670,673875..674039,674302..674420,674518..674677,675499..675607,675802..675900,676071..676155,676822..676983,677576..677765,678645..678812,679317..679406,679845..679987,686096..686320))
location: region:665697-686320:-1
so has part: feature:686096-686320:-1:exon
so has part: feature:679845-679987:-1:exon
so has part: feature:679317-679406:-1:exon
so has part: feature:678645-678812:-1:exon
so has part: feature:677576-677765:-1:exon
so has part: feature:676822-676983:-1:exon
so has part: feature:676071-676155:-1:exon
so has part: feature:675802-675900:-1:exon
so has part: feature:675499-675607:-1:exon
so has part: feature:674518-674677:-1:exon
so has part: feature:674302-674420:-1:exon
so has part: feature:673875-674039:-1:exon
so has part: feature:673556-673670:-1:exon
so has part: feature:673219-673362:-1:exon
so has part: feature:672568-672781:-1:exon
so has part: feature:672235-672352:-1:exon
so has part: feature:670466-670622:-1:exon
so has part: feature:669325-669467:-1:exon
so has part: feature:668477-668651:-1:exon
so has part: feature:667704-667785:-1:exon
so has part: feature:667051-667212:-1:exon
so has part: feature:666236-666453:-1:exon
so has part: feature:665697-665816:-1:exon

XP_030365564.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:686096-686320:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:679845-679987:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:679317-679406:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:678645-678812:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:677576-677765:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:676822-676983:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:676071-676155:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:675802-675900:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:675499-675607:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:674518-674677:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:674302-674420:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:673875-674039:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:673556-673670:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:673219-673362:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:672568-672781:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:672235-672352:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:670466-670622:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:669325-669467:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:668477-668651:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:667704-667785:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:667051-667212:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:666236-666453:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:665697-665816:-1:exon

UPF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: UPF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: regulator of nonsense transcripts 1 isoform X1
translation: MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQGQGPPGAGQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
SIO_010081: UPF1
subclass of: SO_0000673
so part of: UPF1
location: complement(join(665697..665816,666236..666453,667051..667212,667704..667785,668477..668651,669325..669467,670466..670622,672235..672352,672568..672781,673219..673362,673556..673670,673875..674039,674302..674420,674518..674677,675499..675616,675802..675900,676071..676155,676822..676983,677576..677765,678645..678812,679317..679406,679845..679987,686096..686320))
location: region:665697-686320:-1
so has part: feature:686096-686320:-1:exon
so has part: feature:679845-679987:-1:exon
so has part: feature:679317-679406:-1:exon
so has part: feature:678645-678812:-1:exon
so has part: feature:677576-677765:-1:exon
so has part: feature:676822-676983:-1:exon
so has part: feature:676071-676155:-1:exon
so has part: feature:675802-675900:-1:exon
so has part: feature:675499-675616:-1:exon
so has part: feature:674518-674677:-1:exon
so has part: feature:674302-674420:-1:exon
so has part: feature:673875-674039:-1:exon
so has part: feature:673556-673670:-1:exon
so has part: feature:673219-673362:-1:exon
so has part: feature:672568-672781:-1:exon
so has part: feature:672235-672352:-1:exon
so has part: feature:670466-670622:-1:exon
so has part: feature:669325-669467:-1:exon
so has part: feature:668477-668651:-1:exon
so has part: feature:667704-667785:-1:exon
so has part: feature:667051-667212:-1:exon
so has part: feature:666236-666453:-1:exon
so has part: feature:665697-665816:-1:exon

XP_030365563.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:686096-686320:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:679845-679987:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:679317-679406:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:678645-678812:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:677576-677765:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:676822-676983:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:676071-676155:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:675802-675900:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:675499-675616:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:674518-674677:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:674302-674420:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:673875-674039:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:673556-673670:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:673219-673362:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:672568-672781:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:672235-672352:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:670466-670622:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:669325-669467:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:668477-668651:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:667704-667785:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:667051-667212:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:666236-666453:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:665697-665816:-1:exon

COMP
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: COMP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 687100..722372
location: region:687100-722372:1
so has part: feature:687100-722372:1:exon
subclass of: SO_0000010

115618290
type: Gene
SIO_000068: ncbigene

position:687100:1
position: 687100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:722372:1
position: 722372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:687100-722372:1:exon

COMP
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: COMP
product: cartilage oligomeric matrix protein, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 28 long SRA reads, 50 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030509708.1
SIO_010081: COMP
subclass of: SO_0000673
so part of: COMP
location: join(687100..689064,689368..691416,692854..694168,694358..694458,700419..700564,704889..705010,705172..705305,706748..706995,709079..709164,711230..711281,713397..713569,714831..714968,715736..715813,715956..716114,716675..716779,716919..717026,717196..717355,718572..718690,719097..719149,719542..719735,720160..720338,720549..720597,720830..721026,721159..721331,721502..721641,721816..722372)
location: region:687100-722372:1
so has part: feature:687100-689064:1:exon
so has part: feature:689368-691416:1:exon
so has part: feature:692854-694168:1:exon
so has part: feature:694358-694458:1:exon
so has part: feature:700419-700564:1:exon
so has part: feature:704889-705010:1:exon
so has part: feature:705172-705305:1:exon
so has part: feature:706748-706995:1:exon
so has part: feature:709079-709164:1:exon
so has part: feature:711230-711281:1:exon
so has part: feature:713397-713569:1:exon
so has part: feature:714831-714968:1:exon
so has part: feature:715736-715813:1:exon
so has part: feature:715956-716114:1:exon
so has part: feature:716675-716779:1:exon
so has part: feature:716919-717026:1:exon
so has part: feature:717196-717355:1:exon
so has part: feature:718572-718690:1:exon
so has part: feature:719097-719149:1:exon
so has part: feature:719542-719735:1:exon
so has part: feature:720160-720338:1:exon
so has part: feature:720549-720597:1:exon
so has part: feature:720830-721026:1:exon
so has part: feature:721159-721331:1:exon
so has part: feature:721502-721641:1:exon
so has part: feature:721816-722372:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:687100-689064:1:exon

position:689064:1
position: 689064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:689368-691416:1:exon

position:689368:1
position: 689368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:691416:1
position: 691416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:692854-694168:1:exon

position:692854:1
position: 692854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:694168:1
position: 694168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:694358-694458:1:exon

position:694358:1
position: 694358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:694458:1
position: 694458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:700419-700564:1:exon

position:700419:1
position: 700419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:700564:1
position: 700564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:704889-705010:1:exon

position:704889:1
position: 704889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:705010:1
position: 705010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:705172-705305:1:exon

position:705172:1
position: 705172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:705305:1
position: 705305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:706748-706995:1:exon

position:706748:1
position: 706748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:706995:1
position: 706995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:709079-709164:1:exon

position:709079:1
position: 709079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:709164:1
position: 709164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:711230-711281:1:exon

position:711230:1
position: 711230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:711281:1
position: 711281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:713397-713569:1:exon

position:713397:1
position: 713397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:713569:1
position: 713569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:714831-714968:1:exon

position:714831:1
position: 714831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:714968:1
position: 714968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:715736-715813:1:exon

position:715736:1
position: 715736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:715813:1
position: 715813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:715956-716114:1:exon

position:715956:1
position: 715956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:716114:1
position: 716114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:716675-716779:1:exon

position:716675:1
position: 716675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:716779:1
position: 716779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:716919-717026:1:exon

position:716919:1
position: 716919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:717026:1
position: 717026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:717196-717355:1:exon

position:717196:1
position: 717196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:717355:1
position: 717355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:718572-718690:1:exon

position:718572:1
position: 718572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:718690:1
position: 718690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:719097-719149:1:exon

position:719097:1
position: 719097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:719149:1
position: 719149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:719542-719735:1:exon

position:719542:1
position: 719542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:719735:1
position: 719735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:720160-720338:1:exon

position:720160:1
position: 720160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:720338:1
position: 720338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:720549-720597:1:exon

position:720549:1
position: 720549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:720597:1
position: 720597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:720830-721026:1:exon

position:720830:1
position: 720830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:721026:1
position: 721026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:721159-721331:1:exon

position:721159:1
position: 721159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:721331:1
position: 721331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:721502-721641:1:exon

position:721502:1
position: 721502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:721641:1
position: 721641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:721816-722372:1:exon

position:721816:1
position: 721816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

COMP
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: COMP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cartilage oligomeric matrix protein isoform X1
translation: MTSALAFVFLLCLSCPFSSCQQRRAGGEVGPEMLEEMRETNRVLMEVRDLLRQQIKEITFLKNTVMECDACGMHTEATGPVITVTQFNRCLPNSCFPGVACTETGTGFRCGPCPPGYSGNGTHCTDINECNANPCFPKVQCINTSPGFRCDPCPPGFTGQMVEGVGLAYARANKQVCTDINECETGAARNCVPNSICINTRGSYKCGACKPGFVGDQVSGCRSQSVRRCPNGEISPCHEKAECIVERDGSLSCACLVGWAGNGYVCGKDTDIDGVPDEKQRCSDKKCRKDNCMTVPNSGQEDADRDGIGDACDDDADGDGILNAEDNCVYTRNADQRNADKDNFGDACDNCRQVKNNDQKDIDGDGKGDECDDDMDGDGIKNPMDNCERVPNPDQKDVDGDGVGDVCDSCPTVSNPDQKDTDHDLVGDVCDTNQDSDGDGHQDTRDNCPSVPNSSQVDTDNDGLGDECDDDDDDDGIPDEKPPGPDNCRLVPNPGQEDSDGDGVGNLCEDDFDRDMVIDRIDVCPENAEVTLTDFRAFQTVVLDPEGDAQIDPNWIVLNQGMEIVQTMNSDPGLAVGYTAFNGVDFEGTFHVNTATDDDYAGFIFGYQDSSSFYVVMWKQMEQTYWQANPFRAVAEPGIQLKAVKSKTGPGEYLRNSLWHTGDTTDQVKLLWKDPRNSGWKDKTSYRWFLQHRPQVGYIRARFYEGPEVVADTGVVLDTTMRGGRLGVFCFSQENIIWSNLRYRCNDTIPEDYETFRVQQD
SIO_010081: COMP
subclass of: SO_0000673
so part of: COMP
location: join(706920..706995,709079..709164,711230..711281,713397..713569,714831..714968,715736..715813,715956..716114,716675..716779,716919..717026,717196..717355,718572..718690,719097..719149,719542..719735,720160..720338,720549..720597,720830..721026,721159..721331,721502..721641,721816..721862)
location: region:706920-721862:1
so has part: feature:706920-706995:1:exon
so has part: feature:709079-709164:1:exon
so has part: feature:711230-711281:1:exon
so has part: feature:713397-713569:1:exon
so has part: feature:714831-714968:1:exon
so has part: feature:715736-715813:1:exon
so has part: feature:715956-716114:1:exon
so has part: feature:716675-716779:1:exon
so has part: feature:716919-717026:1:exon
so has part: feature:717196-717355:1:exon
so has part: feature:718572-718690:1:exon
so has part: feature:719097-719149:1:exon
so has part: feature:719542-719735:1:exon
so has part: feature:720160-720338:1:exon
so has part: feature:720549-720597:1:exon
so has part: feature:720830-721026:1:exon
so has part: feature:721159-721331:1:exon
so has part: feature:721502-721641:1:exon
so has part: feature:721816-721862:1:exon

XP_030365568.1
type: Protein
SIO_000068: ncbiprotein

position:706920:1
position: 706920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:721862:1
position: 721862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:706920-706995:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:709079-709164:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:711230-711281:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:713397-713569:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:714831-714968:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:715736-715813:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:715956-716114:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:716675-716779:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:716919-717026:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:717196-717355:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:718572-718690:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:719097-719149:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:719542-719735:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:720160-720338:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:720549-720597:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:720830-721026:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:721159-721331:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:721502-721641:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:721816-721862:1:exon

COMP
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: COMP
product: cartilage oligomeric matrix protein, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 26 long SRA reads, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030509709.1
SIO_010081: COMP
subclass of: SO_0000673
so part of: COMP
location: join(709082..709164,710972..711103,711230..711281,713397..713569,714831..714968,715736..715813,715956..716114,716675..716779,716919..717026,717196..717355,718572..718690,719097..719149,719542..719735,720160..720338,720549..720597,720830..721026,721159..721331,721502..721641,721816..722372)
location: region:709082-722372:1
so has part: feature:709082-709164:1:exon
so has part: feature:710972-711103:1:exon
so has part: feature:711230-711281:1:exon
so has part: feature:713397-713569:1:exon
so has part: feature:714831-714968:1:exon
so has part: feature:715736-715813:1:exon
so has part: feature:715956-716114:1:exon
so has part: feature:716675-716779:1:exon
so has part: feature:716919-717026:1:exon
so has part: feature:717196-717355:1:exon
so has part: feature:718572-718690:1:exon
so has part: feature:719097-719149:1:exon
so has part: feature:719542-719735:1:exon
so has part: feature:720160-720338:1:exon
so has part: feature:720549-720597:1:exon
so has part: feature:720830-721026:1:exon
so has part: feature:721159-721331:1:exon
so has part: feature:721502-721641:1:exon
so has part: feature:721816-722372:1:exon

position:709082:1
position: 709082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:709082-709164:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:710972-711103:1:exon

position:710972:1
position: 710972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:711103:1
position: 711103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:711230-711281:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:713397-713569:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:714831-714968:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:715736-715813:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:715956-716114:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:716675-716779:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:716919-717026:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:717196-717355:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:718572-718690:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:719097-719149:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:719542-719735:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:720160-720338:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:720549-720597:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:720830-721026:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:721159-721331:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:721502-721641:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:721816-722372:1:exon

COMP
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: COMP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cartilage oligomeric matrix protein isoform X2
translation: MECDACGMHTEATGPVITVTQFNRCLPNSCFPGVACTETGTGFRCGPCPPGYSGNGTHCTDINECNANPCFPKVQCINTSPGFRCDPCPPGFTGQMVEGVGLAYARANKQVCTDINECETGAARNCVPNSICINTRGSYKCGACKPGFVGDQVSGCRSQSVRRCPNGEISPCHEKAECIVERDGSLSCACLVGWAGNGYVCGKDTDIDGVPDEKQRCSDKKCRKDNCMTVPNSGQEDADRDGIGDACDDDADGDGILNAEDNCVYTRNADQRNADKDNFGDACDNCRQVKNNDQKDIDGDGKGDECDDDMDGDGIKNPMDNCERVPNPDQKDVDGDGVGDVCDSCPTVSNPDQKDTDHDLVGDVCDTNQDSDGDGHQDTRDNCPSVPNSSQVDTDNDGLGDECDDDDDDDGIPDEKPPGPDNCRLVPNPGQEDSDGDGVGNLCEDDFDRDMVIDRIDVCPENAEVTLTDFRAFQTVVLDPEGDAQIDPNWIVLNQGMEIVQTMNSDPGLAVGYTAFNGVDFEGTFHVNTATDDDYAGFIFGYQDSSSFYVVMWKQMEQTYWQANPFRAVAEPGIQLKAVKSKTGPGEYLRNSLWHTGDTTDQVKLLWKDPRNSGWKDKTSYRWFLQHRPQVGYIRARFYEGPEVVADTGVVLDTTMRGGRLGVFCFSQENIIWSNLRYRCNDTIPEDYETFRVQQD
SIO_010081: COMP
subclass of: SO_0000673
so part of: COMP
location: join(711263..711281,713397..713569,714831..714968,715736..715813,715956..716114,716675..716779,716919..717026,717196..717355,718572..718690,719097..719149,719542..719735,720160..720338,720549..720597,720830..721026,721159..721331,721502..721641,721816..721862)
location: region:711263-721862:1
so has part: feature:711263-711281:1:exon
so has part: feature:713397-713569:1:exon
so has part: feature:714831-714968:1:exon
so has part: feature:715736-715813:1:exon
so has part: feature:715956-716114:1:exon
so has part: feature:716675-716779:1:exon
so has part: feature:716919-717026:1:exon
so has part: feature:717196-717355:1:exon
so has part: feature:718572-718690:1:exon
so has part: feature:719097-719149:1:exon
so has part: feature:719542-719735:1:exon
so has part: feature:720160-720338:1:exon
so has part: feature:720549-720597:1:exon
so has part: feature:720830-721026:1:exon
so has part: feature:721159-721331:1:exon
so has part: feature:721502-721641:1:exon
so has part: feature:721816-721862:1:exon

XP_030365569.1
type: Protein
SIO_000068: ncbiprotein

position:711263:1
position: 711263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:711263-711281:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:713397-713569:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:714831-714968:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:715736-715813:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:715956-716114:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:716675-716779:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:716919-717026:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:717196-717355:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:718572-718690:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:719097-719149:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:719542-719735:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:720160-720338:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:720549-720597:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:720830-721026:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:721159-721331:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:721502-721641:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:721816-721862:1:exon

CRTC1
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: CRTC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(725076..772566)
location: region:725076-772566:-1
so has part: feature:725076-772566:-1:exon
subclass of: SO_0000010

115618291
type: Gene
SIO_000068: ncbigene

position:725076:-1
position: 725076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:772566:-1
position: 772566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:725076-772566:-1:exon

CRTC1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: CRTC1
product: CREB regulated transcription coactivator 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 222 long SRA reads, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509710.1
SIO_010081: CRTC1
subclass of: SO_0000673
so part of: CRTC1
location: complement(join(725076..732347,733075..733255,734087..734173,739036..739137,741280..741531,742102..742235,744917..745137,745462..745505,745889..745974,747262..747356,748068..748129,748819..748956,753087..753203,772399..772566))
location: region:725076-772566:-1
so has part: feature:772399-772566:-1:exon
so has part: feature:753087-753203:-1:exon
so has part: feature:748819-748956:-1:exon
so has part: feature:748068-748129:-1:exon
so has part: feature:747262-747356:-1:exon
so has part: feature:745889-745974:-1:exon
so has part: feature:745462-745505:-1:exon
so has part: feature:744917-745137:-1:exon
so has part: feature:742102-742235:-1:exon
so has part: feature:741280-741531:-1:exon
so has part: feature:739036-739137:-1:exon
so has part: feature:734087-734173:-1:exon
so has part: feature:733075-733255:-1:exon
so has part: feature:725076-732347:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:772399-772566:-1:exon

position:772399:-1
position: 772399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:753087-753203:-1:exon

position:753087:-1
position: 753087
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:753203:-1
position: 753203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:748819-748956:-1:exon

position:748819:-1
position: 748819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:748956:-1
position: 748956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:748068-748129:-1:exon

position:748068:-1
position: 748068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:748129:-1
position: 748129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:747262-747356:-1:exon

position:747262:-1
position: 747262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:747356:-1
position: 747356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:745889-745974:-1:exon

position:745889:-1
position: 745889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:745974:-1
position: 745974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:745462-745505:-1:exon

position:745462:-1
position: 745462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:745505:-1
position: 745505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:744917-745137:-1:exon

position:744917:-1
position: 744917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:745137:-1
position: 745137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:742102-742235:-1:exon

position:742102:-1
position: 742102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:742235:-1
position: 742235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:741280-741531:-1:exon

position:741280:-1
position: 741280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:741531:-1
position: 741531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:739036-739137:-1:exon

position:739036:-1
position: 739036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:739137:-1
position: 739137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:734087-734173:-1:exon

position:734087:-1
position: 734087
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:734173:-1
position: 734173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:733075-733255:-1:exon

position:733075:-1
position: 733075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:733255:-1
position: 733255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:725076-732347:-1:exon

position:732347:-1
position: 732347
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CRTC1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: CRTC1
product: CREB regulated transcription coactivator 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 23 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030509711.1
SIO_010081: CRTC1
subclass of: SO_0000673
so part of: CRTC1
location: complement(join(730503..732347,733075..733255,739036..739137,741280..741531,742102..742235,744917..745137,745462..745505,745889..745974,747262..747356,748068..748129,748819..748956,753087..753203,772399..772566))
location: region:730503-772566:-1
so has part: feature:772399-772566:-1:exon
so has part: feature:753087-753203:-1:exon
so has part: feature:748819-748956:-1:exon
so has part: feature:748068-748129:-1:exon
so has part: feature:747262-747356:-1:exon
so has part: feature:745889-745974:-1:exon
so has part: feature:745462-745505:-1:exon
so has part: feature:744917-745137:-1:exon
so has part: feature:742102-742235:-1:exon
so has part: feature:741280-741531:-1:exon
so has part: feature:739036-739137:-1:exon
so has part: feature:733075-733255:-1:exon
so has part: feature:730503-732347:-1:exon

position:730503:-1
position: 730503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:772399-772566:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:753087-753203:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:748819-748956:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:748068-748129:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:747262-747356:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:745889-745974:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:745462-745505:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:744917-745137:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:742102-742235:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:741280-741531:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:739036-739137:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:733075-733255:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:730503-732347:-1:exon

CRTC1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: CRTC1
product: CREB regulated transcription coactivator 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs, 32 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_030509713.1
SIO_010081: CRTC1
subclass of: SO_0000673
so part of: CRTC1
location: complement(join(731978..732347,733075..733255,734087..734173,741280..741531,742102..742235,744917..745137,745462..745505,745889..745974,747262..747356,748068..748129,748819..748956,753087..753203,772399..772566))
location: region:731978-772566:-1
so has part: feature:772399-772566:-1:exon
so has part: feature:753087-753203:-1:exon
so has part: feature:748819-748956:-1:exon
so has part: feature:748068-748129:-1:exon
so has part: feature:747262-747356:-1:exon
so has part: feature:745889-745974:-1:exon
so has part: feature:745462-745505:-1:exon
so has part: feature:744917-745137:-1:exon
so has part: feature:742102-742235:-1:exon
so has part: feature:741280-741531:-1:exon
so has part: feature:734087-734173:-1:exon
so has part: feature:733075-733255:-1:exon
so has part: feature:731978-732347:-1:exon

position:731978:-1
position: 731978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:772399-772566:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:753087-753203:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:748819-748956:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:748068-748129:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:747262-747356:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:745889-745974:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:745462-745505:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:744917-745137:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:742102-742235:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:741280-741531:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:734087-734173:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:733075-733255:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:731978-732347:-1:exon

CRTC1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: CRTC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: CREB-regulated transcription coactivator 1 isoform X3
translation: MAASNNPRKFSEKIALHNQKQAEETAAFEEVMKDLSLTRAHRLQLQKTQYLQLGQSRGQYYGGSLPNVNQIGNSAMDLPFQTPFQSSGLDTSRTTRHHGLVDRVYRDRNRLGSPHRRPLSVDKHGRQVDSCPYGTVYLSPPSDTSWRRTNSDSALHQSTMTPAQQESFTGGSQDIQQKRVLLLTVPGMEETTSEADKTLSKQGWDTKKTGSSRPKSCEVPGINIFPSADQENTTTLIPATHNTGGSLPDLTNIHFPSPLPTPLDPEESTFPALSSSNSTGNLAANLTHLGISTASQGMSPPAPAPQHRPAAVSPLSLSADSRRPQSQQMSPTLSPLSPITQAVAMDALSLEQQLPPYPFFTQTTSQQQQQTQVASTLPQNTPLMQTSGLQRGAQLPPLSVTVPSTIPQSPPGSQTQPSMGIDINSHSSILGSVFGDSYYDQQMTARQANALSHQLEQFNMIENAISSNSLYSPCSTLNYSQAAMMGLTGSHGSLQDSQQLNYSSHGNIPNIILTVTGESPPSLSKELTSSLAGVGDVSFDTDSQFPLDELKIDPLTLDGLHMLNDPDMVLTDPATEDTFRMDRL
SIO_010081: CRTC1
subclass of: SO_0000673
so part of: CRTC1
location: complement(join(732136..732347,733075..733255,734087..734173,741280..741531,742102..742235,744917..745137,745462..745505,745889..745974,747262..747356,748068..748129,748819..748956,753087..753203,772399..772524))
location: region:732136-772524:-1
so has part: feature:772399-772524:-1:exon
so has part: feature:753087-753203:-1:exon
so has part: feature:748819-748956:-1:exon
so has part: feature:748068-748129:-1:exon
so has part: feature:747262-747356:-1:exon
so has part: feature:745889-745974:-1:exon
so has part: feature:745462-745505:-1:exon
so has part: feature:744917-745137:-1:exon
so has part: feature:742102-742235:-1:exon
so has part: feature:741280-741531:-1:exon
so has part: feature:734087-734173:-1:exon
so has part: feature:733075-733255:-1:exon
so has part: feature:732136-732347:-1:exon

XP_030365573.1
type: Protein
SIO_000068: ncbiprotein

position:732136:-1
position: 732136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:772524:-1
position: 772524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:772399-772524:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:753087-753203:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:748819-748956:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:748068-748129:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:747262-747356:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:745889-745974:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:745462-745505:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:744917-745137:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:742102-742235:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:741280-741531:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:734087-734173:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:733075-733255:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:732136-732347:-1:exon

CRTC1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: CRTC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: CREB-regulated transcription coactivator 1 isoform X2
translation: MAASNNPRKFSEKIALHNQKQAEETAAFEEVMKDLSLTRAHRLQLQKTQYLQLGQSRGQYYGGSLPNVNQIGNSAMDLPFQTPFQSSGLDTSRTTRHHGLVDRVYRDRNRLGSPHRRPLSVDKHGRQVDSCPYGTVYLSPPSDTSWRRTNSDSALHQSTMTPAQQESFTGGSQDIQQKRVLLLTVPGMEETTSEADKTLSKQGWDTKKTGSSRPKSCEVPGINIFPSADQENTTTLIPATHNTGGSLPDLTNIHFPSPLPTPLDPEESTFPALSSSNSTGNLAANLTHLGISTASQGMSPPAPAPQHRPAAVSPLSLSADSRRPQSQQMSPTLSPLSPITQAVAMDALSLEQQLPPYPFFTQTTSQQQQQTQVASTLPQNTPLMQTSGLQRGAQLPPLSVTVPSTIPQSPPGSQTQPSMGIDINSASLQQYRSNAGSPANQSPTSPVSNQGFSPGSSPQLEQFNMIENAISSNSLYSPCSTLNYSQAAMMGLTGSHGSLQDSQQLNYSSHGNIPNIILTVTGESPPSLSKELTSSLAGVGDVSFDTDSQFPLDELKIDPLTLDGLHMLNDPDMVLTDPATEDTFRMDRL
SIO_010081: CRTC1
subclass of: SO_0000673
so part of: CRTC1
location: complement(join(732136..732347,733075..733255,739036..739137,741280..741531,742102..742235,744917..745137,745462..745505,745889..745974,747262..747356,748068..748129,748819..748956,753087..753203,772399..772524))
location: region:732136-772524:-1
so has part: feature:772399-772524:-1:exon
so has part: feature:753087-753203:-1:exon
so has part: feature:748819-748956:-1:exon
so has part: feature:748068-748129:-1:exon
so has part: feature:747262-747356:-1:exon
so has part: feature:745889-745974:-1:exon
so has part: feature:745462-745505:-1:exon
so has part: feature:744917-745137:-1:exon
so has part: feature:742102-742235:-1:exon
so has part: feature:741280-741531:-1:exon
so has part: feature:739036-739137:-1:exon
so has part: feature:733075-733255:-1:exon
so has part: feature:732136-732347:-1:exon

XP_030365571.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:772399-772524:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:753087-753203:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:748819-748956:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:748068-748129:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:747262-747356:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:745889-745974:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:745462-745505:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:744917-745137:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:742102-742235:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:741280-741531:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:739036-739137:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:733075-733255:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:732136-732347:-1:exon

CRTC1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2489341
gene: CRTC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: CREB-regulated transcription coactivator 1 isoform X1
translation: MAASNNPRKFSEKIALHNQKQAEETAAFEEVMKDLSLTRAHRLQLQKTQYLQLGQSRGQYYGGSLPNVNQIGNSAMDLPFQTPFQSSGLDTSRTTRHHGLVDRVYRDRNRLGSPHRRPLSVDKHGRQVDSCPYGTVYLSPPSDTSWRRTNSDSALHQSTMTPAQQESFTGGSQDIQQKRVLLLTVPGMEETTSEADKTLSKQGWDTKKTGSSRPKSCEVPGINIFPSADQENTTTLIPATHNTGGSLPDLTNIHFPSPLPTPLDPEESTFPALSSSNSTGNLAANLTHLGISTASQGMSPPAPAPQHRPAAVSPLSLSADSRRPQSQQMSPTLSPLSPITQAVAMDALSLEQQLPPYPFFTQTTSQQQQQTQVASTLPQNTPLMQTSGLQRGAQLPPLSVTVPSTIPQSPPGSQTQPSMGIDINSASLQQYRSNAGSPANQSPTSPVSNQGFSPGSSPQHSSILGSVFGDSYYDQQMTARQANALSHQLEQFNMIENAISSNSLYSPCSTLNYSQAAMMGLTGSHGSLQDSQQLNYSSHGNIPNIILTVTGESPPSLSKELTSSLAGVGDVSFDTDSQFPLDELKIDPLTLDGLHMLNDPDMVLTDPATEDTFRMDRL
SIO_010081: CRTC1
subclass of: SO_0000673
so part of: CRTC1
location: complement(join(732136..732347,733075..733255,734087..734173,739036..739137,741280..741531,742102..742235,744917..745137,745462..745505,745889..745974,747262..747356,748068..748129,748819..748956,753087..753203,772399..772524))
location: region:732136-772524:-1
so has part: feature:772399-772524:-1:exon
so has part: feature:753087-753203:-1:exon
so has part: feature:748819-748956:-1:exon
so has part: feature:748068-748129:-1:exon
so has part: feature:747262-747356:-1:exon
so has part: feature:745889-745974:-1:exon
so has part: feature:745462-745505:-1:exon
so has part: feature:744917-745137:-1:exon
so has part: feature:742102-742235:-1:exon
so has part: feature:741280-741531:-1:exon
so has part: feature:739036-739137:-1:exon
so has part: feature:734087-734173:-1:exon
so has part: feature:733075-733255:-1:exon
so has part: feature:732136-732347:-1:exon

XP_030365570.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:772399-772524:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:753087-753203:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:748819-748956:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:748068-748129:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:747262-747356:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:745889-745974:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:745462-745505:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:744917-745137:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:742102-742235:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:741280-741531:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:739036-739137:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:734087-734173:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:733075-733255:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:732136-732347:-1:exon

KLHL26
type: Gene
subclass of: SO_0000704
RO_0002162: 2489341
gene: KLHL26
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(779739..798820)
location: region:779739-798820:-1
so has part: feature:779739-798820:-1:exon
subclass of: SO_0000010

115618177
type: Gene
SIO_000068: ncbigene

position:779739:-1
position: 779739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:798820:-1
position: 798820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:779739-798820:-1:exon

KLHL26
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 2489341
gene: KLHL26
product: kelch like family member 26, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 long SRA reads, 2 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_030509480.1
SIO_010081: KLHL26
subclass of: SO_0000673
so part of: KLHL26
location: complement(join(779739..783906,798560..798820))
location: region:779739-798820:-1
so has part: feature:798560-798820:-1:exon
so has part: feature:779739-783906:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:798560-798820:-1:exon