Deinococcus psychrotolerans strain S14-83 plasmid unnamed4, complete sequence.
Bacteria; Deinococcota; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.
Deinococcus shelandsis sp. nov., isolated from South Shetland Islands soil of Antarctica
Submitted (27-NOV-2018) Wuhan University, College of Life Science, Guangba Road, Wuhan, Hubei 430000, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP034188.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 57.93x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/01/2023 05:19:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,230\nCDSs (total) :: 4,170\nGenes (coding) :: 4,111\nCDSs (with protein) :: 4,111\nGenes (RNA) :: 60\nrRNAs :: 2, 3, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 3, 2 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 4\nPseudo Genes (total) :: 59\nCDSs (without protein) :: 59\nPseudo Genes (ambiguous residues) :: 0 of 59\nPseudo Genes (frameshifted) :: 25 of 59\nPseudo Genes (incomplete) :: 41 of 59\nPseudo Genes (internal stop) :: 13 of 59\nPseudo Genes (multiple problems) :: 17 of 59\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Deinococcus psychrotolerans
COORDINATES: protein motif:HMM:NF024929.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012873784.1
class I SAM-dependent DNA methyltransferase
COORDINATES: protein motif:HMM:NF024668.2
COORDINATES: protein motif:HMM:NF026032.2
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: similar to AA sequence:RefSeq:WP_013790530.1
GO:0008168 - methyltransferase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014686967.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695839.1
COORDINATES: protein motif:HMM:NF040431.1
COORDINATES: similar to AA sequence:RefSeq:WP_013615994.1
COORDINATES: similar to AA sequence:RefSeq:WP_013615995.1
COORDINATES: similar to AA sequence:RefSeq:WP_015231662.1
COORDINATES: protein motif:HMM:TIGR00706.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF021648.2