Deinococcus psychrotolerans strain S14-83 plasmid unnamed3, complete sequence.
Bacteria; Deinococcota; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.
Deinococcus shelandsis sp. nov., isolated from South Shetland Islands soil of Antarctica
Submitted (27-NOV-2018) Wuhan University, College of Life Science, Guangba Road, Wuhan, Hubei 430000, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP034187.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 57.93x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/01/2023 05:19:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,230\nCDSs (total) :: 4,170\nGenes (coding) :: 4,111\nCDSs (with protein) :: 4,111\nGenes (RNA) :: 60\nrRNAs :: 2, 3, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 3, 2 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 4\nPseudo Genes (total) :: 59\nCDSs (without protein) :: 59\nPseudo Genes (ambiguous residues) :: 0 of 59\nPseudo Genes (frameshifted) :: 25 of 59\nPseudo Genes (incomplete) :: 41 of 59\nPseudo Genes (internal stop) :: 13 of 59\nPseudo Genes (multiple problems) :: 17 of 59\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Deinococcus psychrotolerans
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
NERD domain-containing protein/DEAD/DEAH box helicase
COORDINATES: protein motif:HMM:NF012493.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF038324.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869329.1
COORDINATES: similar to AA sequence:RefSeq:WP_006419319.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009624976.1
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009624981.1
COORDINATES: similar to AA sequence:RefSeq:WP_019826688.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011525838.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: protein motif:HMM:NF024049.2
COORDINATES: similar to AA sequence:RefSeq:WP_020507573.1
COORDINATES: protein motif:HMM:NF024676.2
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012695223.1
COORDINATES: protein motif:HMM:NF012789.2
COORDINATES: protein motif:HMM:NF024117.2
COORDINATES: similar to AA sequence:RefSeq:WP_012695229.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695227.1
COORDINATES: protein motif:HMM:NF024803.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF013938.2
COORDINATES: protein motif:HMM:NF022376.2
DUF2791 family P-loop domain-containing protein
COORDINATES: protein motif:HMM:NF012492.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF025637.2
GO:0004519 - endonuclease activity [Evidence IEA]
HNH endonuclease signature motif containing protein
COORDINATES: protein motif:HMM:NF019348.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021622.2
COORDINATES: similar to AA sequence:RefSeq:WP_019586139.1
COORDINATES: protein motif:HMM:NF024867.2
COORDINATES: protein motif:HMM:TIGR00619.1
COORDINATES: similar to AA sequence:RefSeq:WP_014682978.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012187348.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012695021.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013752.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019011947.1
DDE-type integrase/transposase/recombinase
COORDINATES: protein motif:HMM:NF025126.2
COORDINATES: similar to AA sequence:RefSeq:WP_003290589.1
COORDINATES: similar to AA sequence:RefSeq:WP_058167704.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013077.2
COORDINATES: similar to AA sequence:RefSeq:WP_019012216.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF018691.2
COORDINATES: similar to AA sequence:RefSeq:WP_017872066.1
COORDINATES: similar to AA sequence:RefSeq:WP_009620640.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695822.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_014686750.1
COORDINATES: protein motif:HMM:NF024118.2
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014685679.1
COORDINATES: similar to AA sequence:RefSeq:WP_014686933.1
COORDINATES: protein motif:HMM:NF012974.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
DnaB-like helicase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF015736.2
DnaB-like helicase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF021641.2
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012693824.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586172.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017870389.1
excalibur calcium-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014739373.1
COORDINATES: protein motif:HMM:NF015038.2
COORDINATES: similar to AA sequence:RefSeq:WP_012173238.1
COORDINATES: protein motif:HMM:NF024180.2
COORDINATES: protein motif:HMM:TIGR01613.1
GO:0003896 - DNA primase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024172.2
COORDINATES: similar to AA sequence:RefSeq:WP_009626001.1
COORDINATES: similar to AA sequence:RefSeq:WP_013616005.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: protein motif:HMM:NF024170.2
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: protein motif:HMM:NF025053.2
GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA]
PP2C family serine/threonine-protein phosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_019588720.1
COORDINATES: protein motif:HMM:NF013753.2