Deinococcus psychrotolerans strain S14-83 plasmid unnamed1, complete sequence.
Bacteria; Deinococcota; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.
Deinococcus shelandsis sp. nov., isolated from South Shetland Islands soil of Antarctica
Submitted (27-NOV-2018) Wuhan University, College of Life Science, Guangba Road, Wuhan, Hubei 430000, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP034185.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 57.93x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/01/2023 05:19:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,230\nCDSs (total) :: 4,170\nGenes (coding) :: 4,111\nCDSs (with protein) :: 4,111\nGenes (RNA) :: 60\nrRNAs :: 2, 3, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 3, 2 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 4\nPseudo Genes (total) :: 59\nCDSs (without protein) :: 59\nPseudo Genes (ambiguous residues) :: 0 of 59\nPseudo Genes (frameshifted) :: 25 of 59\nPseudo Genes (incomplete) :: 41 of 59\nPseudo Genes (internal stop) :: 13 of 59\nPseudo Genes (multiple problems) :: 17 of 59\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Deinococcus psychrotolerans
COORDINATES: protein motif:HMM:NF012311.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024603.2
COORDINATES: protein motif:HMM:NF040138.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012693644.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017869366.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
FAD-linked oxidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015236570.1
lysophospholipid acyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018466852.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_019587865.1
COORDINATES: similar to AA sequence:RefSeq:WP_014516538.1
COORDINATES: protein motif:HMM:NF033545.0
GO:0004803 - transposase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024954.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024212.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015236920.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0004497 - monooxygenase activity [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: protein motif:HMM:NF013986.2
BadF/BadG/BcrA/BcrD ATPase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011526055.1
GO:0016835 - carbon-oxygen lyase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009254 - peptidoglycan turnover [Evidence IEA]
N-acetylmuramic acid 6-phosphate etherase
COORDINATES: protein motif:HMM:NF012234.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012770.2
COORDINATES: similar to AA sequence:RefSeq:WP_017870763.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623066.1
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF024854.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013556069.1
COORDINATES: protein motif:HMM:NF019604.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF018691.2
COORDINATES: similar to AA sequence:RefSeq:WP_012695021.1
COORDINATES: similar to AA sequence:RefSeq:WP_013615606.1
COORDINATES: protein motif:HMM:NF025078.2
COORDINATES: similar to AA sequence:RefSeq:WP_012121315.1
COORDINATES: similar to AA sequence:RefSeq:WP_012692662.1
COORDINATES: similar to AA sequence:RefSeq:WP_013558164.1
COORDINATES: similar to AA sequence:RefSeq:WP_014684012.1
phage tail sheath subtilisin-like domain-containing protein
COORDINATES: protein motif:HMM:NF024909.2
COORDINATES: similar to AA sequence:RefSeq:WP_015235656.1
COORDINATES: protein motif:HMM:NF012298.2
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
FHA domain-containing serine/threonine-protein kinase
COORDINATES: similar to AA sequence:RefSeq:WP_013558171.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008893.1
COORDINATES: protein motif:HMM:NF025431.2
COORDINATES: protein motif:HMM:NF017315.2
COORDINATES: similar to AA sequence:RefSeq:WP_014684014.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008888.1
COORDINATES: similar to AA sequence:RefSeq:WP_010883959.1
DNA starvation/stationary phase protection protein
COORDINATES: similar to AA sequence:RefSeq:WP_014684150.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014684149.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_019585905.1
GO:0016746 - acyltransferase activity [Evidence IEA]
GO:0006635 - fatty acid beta-oxidation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010889621.1
COORDINATES: similar to AA sequence:RefSeq:WP_010883969.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008288503.1
COORDINATES: similar to AA sequence:RefSeq:WP_018466971.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235830.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009494160.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013555586.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019586206.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235998.1
GO:0008381 - mechanosensitive monoatomic ion channel activity [Evidence IEA]
mechanosensitive ion channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010539742.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525752.1
COORDINATES: similar to AA sequence:RefSeq:WP_011526080.1
GO:0004335 - galactokinase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019008416.1
GO:0008108 - UDP-glucose:hexose-1-phosphate uridylyltransferase activity [Evidence IEA]
galactose-1-phosphate uridylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_019584757.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522526.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015234266.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015234267.1
COORDINATES: similar to AA sequence:RefSeq:WP_014511236.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013557881.1
GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019586469.1
COORDINATES: similar to AA sequence:RefSeq:WP_017460747.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014058455.1
COORDINATES: protein motif:HMM:NF017239.2
COORDINATES: protein motif:HMM:NF033681.1
ExeM/NucH family extracellular endonuclease
COORDINATES: protein motif:HMM:NF026257.2
COORDINATES: similar to AA sequence:RefSeq:WP_015236060.1
COORDINATES: protein motif:HMM:NF012742.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004671310.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015614 - ABC-type D-xylose transporter activity [Evidence IEA]; GO:0033222 - xylose binding [Evidence IEA]
GO:0015753 - D-xylose transmembrane transport [Evidence IEA]
D-xylose ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011525869.1
COORDINATES: similar to AA sequence:RefSeq:WP_018236506.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019586739.1
GO:0009045 - xylose isomerase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018467020.1
GO:0005515 - protein binding [Evidence IEA]; GO:0004856 - xylulokinase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0005997 - xylulose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011529921.1
COORDINATES: similar to AA sequence:RefSeq:WP_019585522.1
COORDINATES: protein motif:HMM:NF019498.2
COORDINATES: similar to AA sequence:RefSeq:WP_019585523.1
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019947264.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555271.1
COORDINATES: protein motif:HMM:NF038074.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555269.1
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015348930.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013555267.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014689611.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555265.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889436.1
GO:0015205 - nucleobase transmembrane transporter activity [Evidence IEA]
nucleobase:cation symporter-2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019586521.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587850.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525960.1
GO:0008892 - guanine deaminase activity [Evidence IEA]
GO:0006147 - guanine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019008365.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]
GO:0065003 - protein-containing complex assembly [Evidence IEA]; GO:0009115 - xanthine catabolic process [Evidence IEA]
xanthine dehydrogenase accessory protein XdhC
COORDINATES: similar to AA sequence:RefSeq:WP_019587843.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]; GO:0004854 - xanthine dehydrogenase activity [Evidence IEA]
GO:0009115 - xanthine catabolic process [Evidence IEA]
xanthine dehydrogenase molybdopterin binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014695733.1
COORDINATES: similar to AA sequence:RefSeq:WP_013014309.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695037.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019010896.1
COORDINATES: similar to AA sequence:RefSeq:WP_019585287.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525713.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
nucleoside/nucleotide kinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019010894.1
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019010893.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695041.1
COORDINATES: similar to AA sequence:RefSeq:WP_013159417.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019200 - carbohydrate kinase activity [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF018528.2
COORDINATES: similar to AA sequence:RefSeq:WP_011285655.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019007891.1
COORDINATES: similar to AA sequence:RefSeq:WP_012692189.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_012119158.1
GO:0046556 - alpha-L-arabinofuranosidase activity [Evidence IEA]
GO:0046373 - L-arabinose metabolic process [Evidence IEA]
alpha-L-arabinofuranosidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019012465.1
GO:0030246 - carbohydrate binding [Evidence IEA]; GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019587046.1
COORDINATES: similar to AA sequence:RefSeq:WP_014684929.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019011575.1
COORDINATES: similar to AA sequence:RefSeq:WP_015234702.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010630.1
COORDINATES: similar to AA sequence:RefSeq:WP_010887801.1
GO:0019628 - urate catabolic process [Evidence IEA]
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_011525965.1
GO:0004846 - urate oxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010887804.1
COORDINATES: protein motif:HMM:NF021637.2
COORDINATES: similar to AA sequence:RefSeq:WP_019586026.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_019011972.1
GO:0102662 - malonate-semialdehyde dehydrogenase (acetylating, NAD+) activity [Evidence IEA]
CoA-acylating methylmalonate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_006828138.1
aminoglycoside phosphotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011531000.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0003955 - NAD(P)H dehydrogenase (quinone) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011529824.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019012005.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004819 - glutamine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006425 - glutaminyl-tRNA aminoacylation [Evidence IEA]
glutamine--tRNA ligase/YqeY domain fusion protein
COORDINATES: similar to AA sequence:RefSeq:WP_019010274.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611701.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: similar to AA sequence:RefSeq:WP_011529895.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587292.1
COORDINATES: similar to AA sequence:RefSeq:WP_014685917.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587294.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011484.1
glycogen debranching N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012692122.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587521.1
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: similar to AA sequence:RefSeq:WP_013557635.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_002655683.1
GO:0004347 - glucose-6-phosphate isomerase activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019011830.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_019586162.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019010921.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586158.1
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: similar to AA sequence:RefSeq:WP_019588539.1
COORDINATES: similar to AA sequence:RefSeq:WP_020133677.1
COORDINATES: similar to AA sequence:RefSeq:WP_012615697.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_017248238.1
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019874208.1
GO:0047617 - acyl-CoA hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013158063.1
GO:0016790 - thiolester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015234906.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012363.2
COORDINATES: similar to AA sequence:RefSeq:WP_013555311.1
COORDINATES: protein motif:HMM:NF017206.2
COORDINATES: similar to AA sequence:RefSeq:WP_019585103.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695158.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235607.1
COORDINATES: similar to AA sequence:RefSeq:WP_011526051.1
COORDINATES: similar to AA sequence:RefSeq:WP_011526050.1
COORDINATES: similar to AA sequence:RefSeq:WP_013557059.1
COORDINATES: similar to AA sequence:RefSeq:WP_013557058.1
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_019008780.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012695279.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012119119.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014695681.1
GO:0008168 - methyltransferase activity [Evidence IEA]
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF021778.2
GO:0052689 - carboxylic ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018777667.1
3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019008852.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694326.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235203.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019009736.1
GO:0008173 - RNA methyltransferase activity [Evidence IEA]
3' terminal RNA ribose 2'-O-methyltransferase Hen1
COORDINATES: similar to AA sequence:RefSeq:WP_003980840.1
GO:0004113 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity [Evidence IEA]; GO:0051731 - polynucleotide 5'-hydroxyl-kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013556063.1
COORDINATES: similar to AA sequence:RefSeq:WP_015237011.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012694745.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012694590.1
COORDINATES: similar to AA sequence:RefSeq:WP_013158860.1
COORDINATES: similar to AA sequence:RefSeq:WP_013012345.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010218.1
COORDINATES: similar to AA sequence:RefSeq:WP_019465956.1
COORDINATES: similar to AA sequence:RefSeq:WP_014684889.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010120.1
COORDINATES: similar to AA sequence:RefSeq:WP_005318203.1
COORDINATES: similar to AA sequence:RefSeq:WP_013901797.1
COORDINATES: protein motif:HMM:NF012371.2
serine hydrolase domain-containing protein
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: protein motif:HMM:NF013646.2
COORDINATES: protein motif:HMM:NF025605.2
COORDINATES: similar to AA sequence:RefSeq:WP_013555381.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555680.1
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010889411.1
GO:0016153 - urocanate hydratase activity [Evidence IEA]
GO:0006548 - histidine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013177420.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017871477.1
GO:0050480 - imidazolonepropionase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014684067.1
GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:TIGR00711.1
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: protein motif:HMM:NF014385.2
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016571436.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010451.1
GO:0006096 - glycolytic process [Evidence IEA]
dihydrolipoamide acetyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013704062.1
COORDINATES: similar to AA sequence:RefSeq:WP_013615583.1
alpha-ketoacid dehydrogenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_019585328.1
GO:0045250 - cytosolic pyruvate dehydrogenase complex [Evidence IEA]
GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IEA]
GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IEA]
pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_010886830.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015236477.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694580.1
GO:0004559 - alpha-mannosidase activity [Evidence IEA]
GO:0006013 - mannose metabolic process [Evidence IEA]
glycoside hydrolase family 38 C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013614469.1
GO:0015103 - inorganic anion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015234703.1
GO:0010124 - phenylacetate catabolic process [Evidence IEA]
1,2-phenylacetyl-CoA epoxidase subunit PaaA
COORDINATES: similar to AA sequence:RefSeq:WP_012692410.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008425.1
1,2-phenylacetyl-CoA epoxidase subunit PaaC
COORDINATES: similar to AA sequence:RefSeq:WP_015234706.1
1,2-phenylacetyl-CoA epoxidase subunit PaaD
COORDINATES: similar to AA sequence:RefSeq:WP_011665736.1
COORDINATES: similar to AA sequence:RefSeq:WP_011531035.1
phenylacetic acid degradation bifunctional protein PaaZ
COORDINATES: similar to AA sequence:RefSeq:WP_019586585.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008413.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013623095.1
COORDINATES: similar to AA sequence:RefSeq:WP_011523347.1
COORDINATES: similar to AA sequence:RefSeq:WP_013557031.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525640.1
GO:0018480 - 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase activity [Evidence IEA]
GO:1901023 - 4-hydroxyphenylacetate catabolic process [Evidence IEA]
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_015234765.1
4-hydroxyphenylacetate 3-monooxygenase, oxygenase component
COORDINATES: similar to AA sequence:RefSeq:WP_013623236.1
GO:0008687 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase activity [Evidence IEA]
3,4-dihydroxyphenylacetate 2,3-dioxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_013558185.1
COORDINATES: similar to AA sequence:RefSeq:WP_013013615.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006403681.1
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_004955635.1
GO:0018817 - 2-oxo-hept-3-ene-1,7-dioate hydratase activity [Evidence IEA]
2-oxo-hepta-3-ene-1,7-dioic acid hydratase
COORDINATES: similar to AA sequence:RefSeq:WP_010889550.1
GO:0018802 - 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011830679.1
GO:0015930 - glutamate synthase activity [Evidence IEA]; GO:0016638 - oxidoreductase activity, acting on the CH-NH2 group of donors [Evidence IEA]
GO:0006537 - glutamate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020166069.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019008220.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008219.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525592.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014695585.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695588.1
gluconate 2-dehydrogenase subunit 3 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011525820.1
COORDINATES: protein motif:HMM:NF036531.2
GO:0004866 - endopeptidase inhibitor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018387.2
COORDINATES: similar to AA sequence:RefSeq:WP_019011776.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011751.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF019193.2
beta-N-acetylglucosaminidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019010757.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586122.1
dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019586123.1
COORDINATES: similar to AA sequence:RefSeq:WP_018302389.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
glycoside hydrolase family 3 C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019011883.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019011884.1
GO:0047420 - N-acyl-D-amino-acid deacylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019011885.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011886.1
COORDINATES: similar to AA sequence:RefSeq:WP_013702841.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588497.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588498.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011890.1
GO:0016836 - hydro-lyase activity [Evidence IEA]
GO:0009234 - menaquinone biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024770.2
COORDINATES: similar to AA sequence:RefSeq:WP_019010758.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010754.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010753.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010752.1
COORDINATES: protein motif:HMM:NF015438.2
MOSC N-terminal beta barrel domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019008132.1
COORDINATES: similar to AA sequence:RefSeq:WP_019012448.1
COORDINATES: similar to AA sequence:RefSeq:WP_013177207.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019586608.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011173.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_013158263.1
COORDINATES: similar to AA sequence:RefSeq:WP_008632384.1
GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing) activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: protein motif:HMM:NF018925.2
COORDINATES: protein motif:HMM:NF024138.2
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019008838.1
GO:0015412 - ABC-type molybdate transporter activity [Evidence IEA]; GO:0030973 - molybdate ion binding [Evidence IEA]
GO:0015689 - molybdate ion transport [Evidence IEA]
molybdate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006085368.1
COORDINATES: protein motif:HMM:NF012401.2
COORDINATES: similar to AA sequence:RefSeq:WP_013555881.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013614833.1
trypsin-like peptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015234178.1
COORDINATES: similar to AA sequence:RefSeq:WP_015231371.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683987.1
COORDINATES: similar to AA sequence:RefSeq:WP_015234747.1
COORDINATES: similar to AA sequence:RefSeq:WP_015234748.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010775.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_019017918.1
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015234751.1
COORDINATES: similar to AA sequence:RefSeq:WP_012693258.1
COORDINATES: similar to AA sequence:RefSeq:WP_012693259.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010185.1
COORDINATES: similar to AA sequence:RefSeq:WP_013014145.1
GO:0017113 - dihydropyrimidine dehydrogenase (NADP+) activity [Evidence IEA]
GO:0006210 - thymine catabolic process [Evidence IEA]; GO:0006212 - uracil catabolic process [Evidence IEA]
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA
COORDINATES: similar to AA sequence:RefSeq:WP_019586034.1
GO:0004157 - dihydropyrimidinase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019008475.1
COORDINATES: similar to AA sequence:RefSeq:WP_018465729.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586031.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019008472.1
COORDINATES: protein motif:HMM:NF022703.2
COORDINATES: similar to AA sequence:RefSeq:WP_019586029.1
COORDINATES: similar to AA sequence:RefSeq:WP_009066116.1
COORDINATES: similar to AA sequence:RefSeq:WP_010887799.1
COORDINATES: similar to AA sequence:RefSeq:WP_015234069.1
GO:0004474 - malate synthase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019008369.1
COORDINATES: similar to AA sequence:RefSeq:WP_014022120.1
GO:0008679 - 2-hydroxy-3-oxopropionate reductase activity [Evidence IEA]
GO:0019580 - galactarate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011525953.1
hydroxypyruvate isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014896848.1
GO:0009028 - tartronate-semialdehyde synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019008370.1
COORDINATES: similar to AA sequence:RefSeq:WP_018467075.1
GO:0016813 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011525957.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008373.1
GO:0071522 - ureidoglycine aminohydrolase activity [Evidence IEA]
GO:0010136 - ureide catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017869459.1
GO:0004471 - malate dehydrogenase (decarboxylating) (NAD+) activity [Evidence IEA]; GO:0004470 - malic enzyme activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]