Klebsiella africana strain 200023 plasmid pKa_200023_1, complete sequence.
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
A curated collection of Klebsiella metabolic models reveals variable substrate usage and gene essentiality
Submitted (04-OCT-2021) Infectious Diseases, Monash University, 85 Commercial Rd, Melbourne, VIC 3004, Australia
REFSEQ INFORMATION: The reference sequence is identical to\nCP084875.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 01-JAN-2021\nAssembly Method :: Trycycler; Medaka; Pilon v. 0.3.3; 1.3.3;\n 1.23\nAssembly Name :: Klebsiella africana 200023\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 50x\nSequencing Technology :: Minion (Oxford Nanopore) and NextSeq\n 500/550 (Illumina)\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/02/2022 05:18:45\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,237\nCDSs (total) :: 5,115\nGenes (coding) :: 5,023\nCDSs (with protein) :: 5,023\nGenes (RNA) :: 122\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 86\nncRNAs :: 11\nPseudo Genes (total) :: 92\nCDSs (without protein) :: 92\nPseudo Genes (ambiguous residues) :: 0 of 92\nPseudo Genes (frameshifted) :: 45 of 92\nPseudo Genes (incomplete) :: 46 of 92\nPseudo Genes (internal stop) :: 27 of 92\nPseudo Genes (multiple problems) :: 20 of 92\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004181841.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_004026440.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026437.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026435.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004883204.1
COORDINATES: similar to AA sequence:RefSeq:WP_004181845.1
COORDINATES: similar to AA sequence:RefSeq:WP_004883208.1
COORDINATES: similar to AA sequence:RefSeq:WP_004181860.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026417.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026416.1
COORDINATES: similar to AA sequence:RefSeq:WP_004197205.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026415.1
COORDINATES: similar to AA sequence:RefSeq:WP_016947066.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026413.1
COORDINATES: similar to AA sequence:RefSeq:WP_004883219.1
COORDINATES: similar to AA sequence:RefSeq:WP_006816413.1
COORDINATES: similar to AA sequence:RefSeq:WP_000071068.1
COORDINATES: similar to AA sequence:RefSeq:WP_004141386.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026408.1
COORDINATES: similar to AA sequence:RefSeq:WP_016947068.1
COORDINATES: similar to AA sequence:RefSeq:WP_014386580.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026403.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026399.1
COORDINATES: similar to AA sequence:RefSeq:WP_004197229.1
COORDINATES: similar to AA sequence:RefSeq:WP_004197181.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026394.1
COORDINATES: similar to AA sequence:RefSeq:WP_014386579.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026392.1
COORDINATES: similar to AA sequence:RefSeq:WP_004883242.1
COORDINATES: similar to AA sequence:RefSeq:WP_016947072.1
COORDINATES: similar to AA sequence:RefSeq:WP_016947073.1
COORDINATES: similar to AA sequence:RefSeq:WP_016947074.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026379.1
COORDINATES: similar to AA sequence:RefSeq:WP_004902361.1
COORDINATES: similar to AA sequence:RefSeq:WP_004197660.1
COORDINATES: similar to AA sequence:RefSeq:WP_004197663.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026372.1
type I-E CRISPR-associated protein Cas6/Cse3/CasE
COORDINATES: similar to AA sequence:RefSeq:WP_004883274.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004026366.1
COORDINATES: similar to AA sequence:RefSeq:WP_004197664.1
COORDINATES: similar to AA sequence:RefSeq:WP_004197884.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004181894.1
GO:0003684 - damaged DNA binding [Evidence IEA]
translesion error-prone DNA polymerase V subunit UmuC
COORDINATES: similar to AA sequence:RefSeq:WP_004181895.1
COORDINATES: similar to AA sequence:RefSeq:WP_004144067.1
COORDINATES: similar to AA sequence:RefSeq:WP_017901409.1
COORDINATES: protein motif:HMM:NF010277.0
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:NP_052660.1
COORDINATES: similar to AA sequence:RefSeq:WP_014386572.1
COORDINATES: similar to AA sequence:RefSeq:WP_004144074.1
phosphonate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004196317.1
hydrogenase expression/formation protein HypD
COORDINATES: similar to AA sequence:RefSeq:WP_004026340.1
COORDINATES: similar to AA sequence:RefSeq:WP_012540230.1
COORDINATES: similar to AA sequence:RefSeq:WP_004196344.1
COORDINATES: similar to AA sequence:RefSeq:WP_017900899.1
COORDINATES: similar to AA sequence:RefSeq:WP_004181907.1
nuclease-related domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004883400.1
COORDINATES: similar to AA sequence:RefSeq:WP_004196348.1
COORDINATES: similar to AA sequence:RefSeq:WP_004181912.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026325.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0015074 - DNA integration [Evidence IEA]
Members of this protein family are the putative conjugative coupling factor, TraD, as the term is used for the SXT and TOL plasmid systems; Derived by automated computational analysis using gene prediction method: Protein Homology.
conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_016947087.1
COORDINATES: similar to AA sequence:RefSeq:WP_004883411.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026319.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026317.1
COORDINATES: similar to AA sequence:RefSeq:WP_017901461.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026315.1
COORDINATES: similar to AA sequence:RefSeq:WP_004196361.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026310.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026308.1
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004883431.1
COORDINATES: similar to AA sequence:RefSeq:WP_004883433.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004026303.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017900915.1
thioredoxin fold domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011251282.1
COORDINATES: similar to AA sequence:RefSeq:WP_004883444.1
COORDINATES: similar to AA sequence:RefSeq:WP_014386559.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011251279.1
COORDINATES: similar to AA sequence:RefSeq:WP_004196349.1
COORDINATES: similar to AA sequence:RefSeq:WP_004181934.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251275.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251274.1
COORDINATES: similar to AA sequence:RefSeq:WP_004883458.1
COORDINATES: similar to AA sequence:RefSeq:WP_002910103.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_009655004.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026624.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026623.1
COORDINATES: similar to AA sequence:RefSeq:WP_012540135.1
COORDINATES: similar to AA sequence:RefSeq:WP_004883475.1
COORDINATES: similar to AA sequence:RefSeq:WP_004181725.1
COORDINATES: similar to AA sequence:RefSeq:WP_004210231.1
COORDINATES: similar to AA sequence:RefSeq:WP_001176934.1
COORDINATES: similar to AA sequence:RefSeq:NP_309383.1
tellurium resistance cAMP binding protein TerE
COORDINATES: similar to AA sequence:RefSeq:NP_309382.1
tellurium resistance membrane protein TerD
COORDINATES: similar to AA sequence:RefSeq:NP_309381.1
tellurium resistance membrane protein TerC
COORDINATES: similar to AA sequence:RefSeq:NP_309380.1
tellurium resistance membrane protein TerB
COORDINATES: similar to AA sequence:RefSeq:NP_309379.2
tellurium resistance system protein TerA
COORDINATES: similar to AA sequence:RefSeq:WP_012540223.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026600.1
COORDINATES: similar to AA sequence:RefSeq:WP_001280121.1
phosphoribosyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014839883.1
COORDINATES: similar to AA sequence:RefSeq:WP_004181734.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026594.1
HpcH/HpaI aldolase/citrate lyase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004210256.1
COORDINATES: similar to AA sequence:RefSeq:WP_004196888.1
COORDINATES: similar to AA sequence:RefSeq:WP_015731191.1
COORDINATES: similar to AA sequence:RefSeq:WP_002210396.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087240.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026583.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251311.1
PP2C family serine/threonine-protein phosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_012303502.1
COORDINATES: similar to AA sequence:RefSeq:WP_013096748.1
COORDINATES: similar to AA sequence:RefSeq:WP_016529521.1
COORDINATES: similar to AA sequence:RefSeq:WP_000801915.1
COORDINATES: similar to AA sequence:RefSeq:WP_004210286.1
COORDINATES: similar to AA sequence:RefSeq:WP_004118069.1
COORDINATES: similar to AA sequence:RefSeq:WP_004118072.1
COORDINATES: similar to AA sequence:RefSeq:WP_004210308.1
COORDINATES: similar to AA sequence:RefSeq:WP_004186930.1
COORDINATES: similar to AA sequence:RefSeq:WP_004186931.1
Hha/YmoA family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_004117850.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004026552.1
COORDINATES: similar to AA sequence:RefSeq:WP_004117846.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026550.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251302.1
GO:0006274 - DNA replication termination [Evidence IEA]
DNA replication terminus site-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004181761.1
COORDINATES: similar to AA sequence:RefSeq:WP_004117834.1
COORDINATES: similar to AA sequence:RefSeq:WP_012540189.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026546.1
COORDINATES: similar to AA sequence:RefSeq:WP_004181765.1
COORDINATES: similar to AA sequence:RefSeq:WP_004181766.1
COORDINATES: similar to AA sequence:RefSeq:WP_009652473.1
COORDINATES: similar to AA sequence:RefSeq:WP_004181768.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026539.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026538.1
COORDINATES: similar to AA sequence:RefSeq:WP_004181771.1
COORDINATES: similar to AA sequence:RefSeq:WP_004186947.1
COORDINATES: similar to AA sequence:RefSeq:WP_004181774.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026531.1
COORDINATES: similar to AA sequence:RefSeq:WP_004181776.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026527.1
COORDINATES: similar to AA sequence:RefSeq:WP_004186954.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026524.1
IncHI-type conjugal transfer protein TrhU
COORDINATES: similar to AA sequence:RefSeq:WP_004026523.1
TrbC family F-type conjugative pilus assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_004196665.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004026521.1
COORDINATES: similar to AA sequence:RefSeq:WP_004117808.1
COORDINATES: similar to AA sequence:RefSeq:WP_004186959.1
COORDINATES: similar to AA sequence:RefSeq:WP_004196672.1
COORDINATES: similar to AA sequence:RefSeq:WP_014386512.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004181794.1
COORDINATES: similar to AA sequence:RefSeq:WP_004196661.1
COORDINATES: similar to AA sequence:RefSeq:WP_014839951.1
COORDINATES: similar to AA sequence:RefSeq:WP_017901057.1
COORDINATES: similar to AA sequence:RefSeq:WP_014839952.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026510.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026509.1
COORDINATES: similar to AA sequence:RefSeq:WP_004196651.1
COORDINATES: similar to AA sequence:RefSeq:WP_004181801.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026506.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_004026505.1
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: similar to AA sequence:RefSeq:WP_016947303.1
COORDINATES: similar to AA sequence:RefSeq:WP_004181803.1
COORDINATES: similar to AA sequence:RefSeq:WP_004181804.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026502.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026501.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026500.1
COORDINATES: similar to AA sequence:RefSeq:WP_009652458.1
COORDINATES: similar to AA sequence:RefSeq:WP_004883012.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026482.1
COORDINATES: similar to AA sequence:RefSeq:WP_004181814.1
COORDINATES: similar to AA sequence:RefSeq:WP_004883016.1
COORDINATES: similar to AA sequence:RefSeq:WP_004883018.1
COORDINATES: similar to AA sequence:RefSeq:WP_014839958.1
COORDINATES: similar to AA sequence:RefSeq:WP_004883026.1
COORDINATES: similar to AA sequence:RefSeq:WP_004181822.1
COORDINATES: similar to AA sequence:RefSeq:WP_004181823.1
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004181824.1
COORDINATES: similar to AA sequence:RefSeq:WP_004196726.1
COORDINATES: similar to AA sequence:RefSeq:WP_009652418.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026466.1
COORDINATES: similar to AA sequence:RefSeq:WP_004196690.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026464.1
COORDINATES: similar to AA sequence:RefSeq:WP_004181827.1
COORDINATES: similar to AA sequence:RefSeq:WP_000110238.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004181828.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026459.1
COORDINATES: similar to AA sequence:RefSeq:WP_004196694.1
COORDINATES: similar to AA sequence:RefSeq:WP_016947056.1
COORDINATES: similar to AA sequence:RefSeq:WP_004181832.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026454.1
COORDINATES: similar to AA sequence:RefSeq:WP_004196689.1
COORDINATES: similar to AA sequence:RefSeq:WP_004196718.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
class I ribonucleotide reductase maintenance protein YfaE
COORDINATES: similar to AA sequence:RefSeq:WP_014839961.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004026449.1
COORDINATES: similar to AA sequence:RefSeq:WP_004181836.1
COORDINATES: similar to AA sequence:RefSeq:WP_016947061.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026446.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014839963.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026444.1
COORDINATES: similar to AA sequence:RefSeq:WP_004196715.1