Arthrobacter sulfonylureivorans strain S4-C24 plasmid p1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Arthrobacter.
Isotopic signatures of nitrous oxide derived from detoxification processes
Submitted (10-MAR-2022) Research Area Landscape Functioning, WG Microbial Biogeochemistry, Leibniz Centre for Agricultural Landscape Research (ZALF), Eberswalder Str. 84, Muencheberg D-15374, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP093327.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 159x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/06/2023 04:52:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,800\nCDSs (total) :: 3,733\nGenes (coding) :: 3,682\nCDSs (with protein) :: 3,682\nGenes (RNA) :: 67\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 3\nPseudo Genes (total) :: 51\nCDSs (without protein) :: 51\nPseudo Genes (ambiguous residues) :: 0 of 51\nPseudo Genes (frameshifted) :: 25 of 51\nPseudo Genes (incomplete) :: 40 of 51\nPseudo Genes (internal stop) :: 1 of 51\nPseudo Genes (multiple problems) :: 14 of 51\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_013603183.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
ParB/RepB/Spo0J family partition protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012623490.1
COORDINATES: similar to AA sequence:RefSeq:WP_017200543.1
COORDINATES: similar to AA sequence:RefSeq:WP_019874424.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014057910.1
GO:0046855 - inositol phosphate dephosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003923786.1
alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase
COORDINATES: protein motif:HMM:NF012235.2
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011782985.1
COORDINATES: similar to AA sequence:RefSeq:WP_003891300.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA]
GO:0019700 - organic phosphonate catabolic process [Evidence IEA]
alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ
COORDINATES: similar to AA sequence:RefSeq:WP_011782987.1
GO:0019634 - organic phosphonate metabolic process [Evidence IEA]
carbon-phosphorus lyase complex subunit PhnI
COORDINATES: protein motif:HMM:NF017645.2
phosphonate C-P lyase system protein PhnH
COORDINATES: similar to AA sequence:RefSeq:WP_011782989.1
GO:0019634 - organic phosphonate metabolic process [Evidence IEA]; GO:0015716 - organic phosphonate transport [Evidence IEA]
phosphonate C-P lyase system protein PhnG
COORDINATES: similar to AA sequence:RefSeq:WP_011782990.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0015716 - organic phosphonate transport [Evidence IEA]
phosphonate metabolism transcriptional regulator PhnF
COORDINATES: similar to AA sequence:RefSeq:WP_003891305.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]
phosphonate ABC transporter, permease protein PhnE
COORDINATES: similar to AA sequence:RefSeq:WP_011782992.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
phosphonate ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005627842.1
PhnD/SsuA/transferrin family substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017832989.1
COORDINATES: similar to AA sequence:RefSeq:WP_017794480.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689613.1
COORDINATES: similar to AA sequence:RefSeq:WP_005180243.1
COORDINATES: similar to AA sequence:RefSeq:WP_012623556.1
COORDINATES: similar to AA sequence:RefSeq:WP_019483755.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012623494.1
COORDINATES: similar to AA sequence:RefSeq:WP_009358092.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005268117.1
COORDINATES: similar to AA sequence:RefSeq:WP_012623487.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689751.1
COORDINATES: protein motif:HMM:NF036700.2
COORDINATES: similar to AA sequence:RefSeq:WP_012623158.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689692.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689691.1
COORDINATES: protein motif:HMM:NF024248.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011689685.1
GO:0004040 - amidase activity [Evidence IEA]; GO:0042834 - peptidoglycan binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012623546.1
COORDINATES: similar to AA sequence:RefSeq:WP_018762613.1
COORDINATES: similar to AA sequence:RefSeq:WP_011777318.1
COORDINATES: similar to AA sequence:RefSeq:WP_011777317.1
COORDINATES: similar to AA sequence:RefSeq:WP_012623550.1
COORDINATES: similar to AA sequence:RefSeq:WP_012623551.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689678.1
COORDINATES: similar to AA sequence:RefSeq:WP_018762606.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689719.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689820.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011689717.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018762605.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018779753.1
COORDINATES: similar to AA sequence:RefSeq:WP_009357384.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013602267.1
COORDINATES: similar to AA sequence:RefSeq:WP_011775946.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF036525.2
COORDINATES: similar to AA sequence:RefSeq:WP_009100471.1
COORDINATES: protein motif:HMM:NF013584.2
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: protein motif:HMM:NF012711.2
class I adenylate-forming enzyme family protein
COORDINATES: protein motif:HMM:NF012596.2
GO:0003824 - catalytic activity [Evidence IEA]
enoyl-CoA hydratase/isomerase family protein
COORDINATES: protein motif:HMM:NF025050.2
COORDINATES: similar to AA sequence:RefSeq:WP_019511896.1
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_016691341.1
COORDINATES: protein motif:HMM:NF019590.2
COORDINATES: similar to AA sequence:RefSeq:WP_006966421.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611950.1
GO:0004803 - transposase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015445.2
TRAP transporter substrate-binding protein DctP
COORDINATES: similar to AA sequence:RefSeq:WP_008298534.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: protein motif:HMM:NF013757.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF039910.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012932054.1
GO:0016624 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [Evidence IEA]
alpha-ketoacid dehydrogenase subunit alpha/beta
COORDINATES: similar to AA sequence:RefSeq:WP_015494255.1
COORDINATES: similar to AA sequence:RefSeq:WP_011598950.1
COORDINATES: protein motif:HMM:NF036995.2
DUF1016 N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013753.2
COORDINATES: similar to AA sequence:RefSeq:WP_009082012.1
COORDINATES: similar to AA sequence:RefSeq:WP_017793554.1
COORDINATES: similar to AA sequence:RefSeq:WP_020636385.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_017828408.1
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF024242.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012335.2
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004984398.1
COORDINATES: similar to AA sequence:RefSeq:WP_004859478.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF012885.2
COORDINATES: similar to AA sequence:RefSeq:WP_005278130.1
COORDINATES: protein motif:HMM:NF025878.2
COORDINATES: protein motif:HMM:NF019604.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF019474.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019930829.1
COORDINATES: similar to AA sequence:RefSeq:WP_015399608.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689827.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689828.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018780299.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_011689753.1
COORDINATES: protein motif:HMM:NF024118.2
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007269537.1
COORDINATES: similar to AA sequence:RefSeq:WP_018534015.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012738.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024772.2
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012946.2
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020097557.1
COORDINATES: protein motif:HMM:NF013696.2
COORDINATES: similar to AA sequence:RefSeq:WP_005257385.1
COORDINATES: similar to AA sequence:RefSeq:WP_009377411.1
COORDINATES: similar to AA sequence:RefSeq:WP_005278129.1
COORDINATES: similar to AA sequence:RefSeq:WP_018398491.1
GO:0009317 - acetyl-CoA carboxylase complex [Evidence IEA]
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
acetyl-CoA carboxylase biotin carboxyl carrier protein
COORDINATES: similar to AA sequence:RefSeq:WP_005278131.1
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]; GO:0004075 - biotin carboxylase activity [Evidence IEA]
acetyl-CoA carboxylase biotin carboxylase subunit
COORDINATES: protein motif:HMM:NF024799.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018664700.1
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017832557.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014420.2
energy-coupling factor transporter transmembrane component T
COORDINATES: similar to AA sequence:RefSeq:WP_013349219.1
COORDINATES: similar to AA sequence:RefSeq:WP_018773250.1
maleylpyruvate isomerase family mycothiol-dependent enzyme
COORDINATES: protein motif:HMM:NF039733.1
COORDINATES: similar to AA sequence:RefSeq:WP_013421224.1
COORDINATES: similar to AA sequence:RefSeq:WP_009743599.1
COORDINATES: similar to AA sequence:RefSeq:WP_013161016.1
COORDINATES: protein motif:HMM:NF025015.2
COORDINATES: similar to AA sequence:RefSeq:WP_018779228.1
COORDINATES: similar to AA sequence:RefSeq:WP_010154738.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006241555.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
type I restriction-modification system subunit M
COORDINATES: protein motif:HMM:NF039782.1
COORDINATES: similar to AA sequence:RefSeq:WP_017193979.1
COORDINATES: similar to AA sequence:RefSeq:WP_016699757.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845373.1