Anoxybacillus caldiproteolyticus strain U458 plasmid pBstUI51, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Anoxybacillus.
Complete genomes and methylomes of original NEB strains producers of restriction endonucleases
Submitted (03-NOV-2020) Genome biology, NEB, 240 County Rd, Ipswich, MA 01938, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP064061.1.\nBacteria and source DNA available from NEB 433 culture collection.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 19-OCT-2020\nAssembly Method :: HGAP v. 2.3.0\nAssembly Name :: BstUI_NEB433_HGAP3_5\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 309.58x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/29/2022 03:10:39\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,908\nCDSs (total) :: 3,777\nGenes (coding) :: 3,646\nCDSs (with protein) :: 3,646\nGenes (RNA) :: 131\nrRNAs :: 9, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 9, 9 (5S, 16S, 23S)\ntRNAs :: 99\nncRNAs :: 5\nPseudo Genes (total) :: 131\nCDSs (without protein) :: 131\nPseudo Genes (ambiguous residues) :: 0 of 131\nPseudo Genes (frameshifted) :: 79 of 131\nPseudo Genes (incomplete) :: 75 of 131\nPseudo Genes (internal stop) :: 45 of 131\nPseudo Genes (multiple problems) :: 50 of 131\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006323828.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011888079.1
COORDINATES: similar to AA sequence:RefSeq:WP_017795165.1
COORDINATES: similar to AA sequence:RefSeq:WP_013400125.1
COORDINATES: similar to AA sequence:RefSeq:WP_009336266.1
COORDINATES: similar to AA sequence:RefSeq:WP_009676290.1
COORDINATES: similar to AA sequence:RefSeq:WP_000661509.1
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_001992085.1
COORDINATES: similar to AA sequence:RefSeq:WP_011877562.1
COORDINATES: similar to AA sequence:RefSeq:WP_005940794.1
phage terminase large subunit family protein
COORDINATES: protein motif:HMM:NF040009.1
COORDINATES: similar to AA sequence:RefSeq:WP_012004101.1
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF012783.2
COORDINATES: similar to AA sequence:RefSeq:WP_008908159.1
COORDINATES: similar to AA sequence:RefSeq:WP_004069503.1
COORDINATES: protein motif:HMM:NF018472.2
COORDINATES: similar to AA sequence:RefSeq:WP_011877572.1
COORDINATES: similar to AA sequence:RefSeq:WP_008908167.1
COORDINATES: protein motif:HMM:NF021614.2
COORDINATES: protein motif:HMM:TIGR01760.1
GO:0016032 - viral process [Evidence IEA]
COORDINATES: protein motif:HMM:NF017739.2
contractile injection system protein, VgrG/Pvc8 family
COORDINATES: protein motif:HMM:TIGR01644.1
COORDINATES: protein motif:HMM:NF018674.2
COORDINATES: protein motif:HMM:NF016736.2
COORDINATES: similar to AA sequence:RefSeq:WP_009331328.1
COORDINATES: protein motif:HMM:NF023985.2
COORDINATES: similar to AA sequence:RefSeq:WP_013400158.1
COORDINATES: similar to AA sequence:RefSeq:WP_003349902.1
COORDINATES: similar to AA sequence:RefSeq:WP_000151296.1
COORDINATES: similar to AA sequence:RefSeq:WP_000838151.1
GO:0140911 - pore-forming activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013357.2
GO:0003796 - lysozyme activity [Evidence IEA]
GO:0016998 - cell wall macromolecule catabolic process [Evidence IEA]; GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013855.2
COORDINATES: similar to AA sequence:RefSeq:WP_016119112.1
COORDINATES: similar to AA sequence:RefSeq:WP_011888483.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011230058.1
COORDINATES: similar to AA sequence:RefSeq:WP_013877725.1
COORDINATES: similar to AA sequence:RefSeq:WP_015216843.1
adenylate/guanylate cyclase domain-containing protein
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF024835.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF038310.1
AimR family lysis-lysogeny pheromone receptor
COORDINATES: protein motif:HMM:NF013540.2