Bacteroides cellulosilyticus strain CL06T03C01 plasmid pMMCAT_BcelCL06T03, complete sequence.
Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.
Mobile Type VI secretion system loci of the gut Bacteroidales display extensive intra-ecosystem transfer, multi-species spread and geographical clustering
Submitted (25-JAN-2021) Department of Medicine/Division of Infectious Diseases, Brigham & Women's Hospital, 181 Longwood Avenue, Boston, MA 02115, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP072253.1.\nSequencing by the Institute for Genome Sciences, Genomics Resource\nCenter, School of Medicine, University of Maryland, 801 W.\nBaltimore Street, Baltimore, MD 21201, USA. Gene calling method:\nProdigal version 2.6.3. Annotated using a custom modification of\nProkka version 1.14.6.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 20-OCT-2020\nAssembly Method :: FALCON-Unzip v. 1.2.0\nAssembly Name :: BcelCL06T03C01_pbv2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 171x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 04:21:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,612\nCDSs (total) :: 5,533\nGenes (coding) :: 5,463\nCDSs (with protein) :: 5,463\nGenes (RNA) :: 79\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 65\nncRNAs :: 2\nPseudo Genes (total) :: 70\nCDSs (without protein) :: 70\nPseudo Genes (ambiguous residues) :: 0 of 70\nPseudo Genes (frameshifted) :: 23 of 70\nPseudo Genes (incomplete) :: 47 of 70\nPseudo Genes (internal stop) :: 12 of 70\nPseudo Genes (multiple problems) :: 11 of 70\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007564705.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_005868870.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008771414.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868867.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868866.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868865.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005868864.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868863.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868862.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868861.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868860.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868858.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868857.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868855.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868853.1
COORDINATES: protein motif:HMM:NF013884.2
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008770296.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005868843.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868841.1
CpsB/CapC family capsule biosynthesis tyrosine phosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_004293531.1
GO:0045226 - extracellular polysaccharide biosynthetic process [Evidence IEA]
polysaccharide biosynthesis tyrosine autokinase
COORDINATES: similar to AA sequence:RefSeq:WP_004320798.1
GO:0015159 - polysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015774 - polysaccharide transport [Evidence IEA]
polysaccharide biosynthesis/export family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009275860.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868833.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
UpxY family transcription antiterminator
COORDINATES: similar to AA sequence:RefSeq:WP_008860766.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276868.1
COORDINATES: similar to AA sequence:RefSeq:WP_008781163.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868823.1
COORDINATES: similar to AA sequence:RefSeq:WP_008781165.1
COORDINATES: similar to AA sequence:RefSeq:WP_007569216.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868817.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_005868815.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008781167.1
COORDINATES: similar to AA sequence:RefSeq:WP_009274828.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010185730.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013611928.1
COORDINATES: similar to AA sequence:RefSeq:WP_008777463.1
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005868809.1
COORDINATES: similar to AA sequence:RefSeq:WP_007851284.1
COORDINATES: similar to AA sequence:RefSeq:WP_007659518.1
COORDINATES: similar to AA sequence:RefSeq:WP_005648607.1
COORDINATES: similar to AA sequence:RefSeq:WP_008777460.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868799.1
COORDINATES: similar to AA sequence:RefSeq:WP_008777459.1
COORDINATES: similar to AA sequence:RefSeq:WP_007659510.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868794.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_004329298.1
COORDINATES: similar to AA sequence:RefSeq:WP_004329299.1
COORDINATES: similar to AA sequence:RefSeq:WP_004329300.1
COORDINATES: similar to AA sequence:RefSeq:WP_004329302.1
COORDINATES: similar to AA sequence:RefSeq:WP_005775886.1
COORDINATES: similar to AA sequence:RefSeq:WP_004329304.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868790.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868789.1
MobC family plasmid mobilization relaxosome protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611159.1
GO:0004803 - transposase activity [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008770285.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868786.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868785.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844659.1
COORDINATES: similar to AA sequence:RefSeq:WP_008770288.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868781.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868780.1
COORDINATES: similar to AA sequence:RefSeq:WP_008781192.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771457.1
COORDINATES: similar to AA sequence:RefSeq:WP_005799262.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_005868776.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844651.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868772.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868770.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868769.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276895.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008771448.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771447.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844644.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005868762.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868761.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771437.1
COORDINATES: similar to AA sequence:RefSeq:WP_008781197.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771441.1
COORDINATES: similar to AA sequence:RefSeq:WP_007568430.1
COORDINATES: similar to AA sequence:RefSeq:WP_007564662.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868755.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868753.1
COORDINATES: similar to AA sequence:RefSeq:WP_007564676.1
COORDINATES: similar to AA sequence:RefSeq:WP_008781195.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005868750.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771460.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868748.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844626.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868910.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844621.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771433.1
COORDINATES: similar to AA sequence:RefSeq:WP_008781143.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844616.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005868902.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844614.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008771427.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771426.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276840.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276841.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771424.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771423.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844600.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771421.1
COORDINATES: similar to AA sequence:RefSeq:WP_008771420.1
COORDINATES: protein motif:HMM:NF040179.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009276848.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276849.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276850.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868879.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844591.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844590.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009276853.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844587.1
COORDINATES: similar to AA sequence:RefSeq:WP_008781157.1