Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Ruegeria.
An Updated genome annotation for the model marine bacterium Ruegeria pomeroyi DSS-3
Erratum:[Stand Genomic Sci. 2015;10:112. PMID: 26613013] Publication Status: Online-Only
Ecological genomics of marine Roseobacters
Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment
Submitted (26-NOV-2013) Marine Science, University of Georgia, 325 Samford Dr., Athens, GA 30602, USA
Submitted (21-OCT-2004) The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, MD 20850, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP000032.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/02/2023 10:13:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,474\nCDSs (total) :: 4,410\nGenes (coding) :: 4,364\nCDSs (with protein) :: 4,364\nGenes (RNA) :: 64\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 3\nPseudo Genes (total) :: 46\nCDSs (without protein) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 30 of 46\nPseudo Genes (incomplete) :: 22 of 46\nPseudo Genes (internal stop) :: 15 of 46\nPseudo Genes (multiple problems) :: 17 of 46\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_014879137.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
phytanoyl-CoA dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009176114.1
COORDINATES: similar to AA sequence:RefSeq:WP_005978072.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007120806.1
GO:0042834 - peptidoglycan binding [Evidence IEA]; GO:0015288 - porin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008203720.1
COORDINATES: similar to AA sequence:RefSeq:WP_010438000.1
COORDINATES: similar to AA sequence:RefSeq:WP_011241793.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004540 - RNA nuclease activity [Evidence IEA]
GO:0042254 - ribosome biogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009176031.1
COORDINATES: similar to AA sequence:RefSeq:WP_010438007.1
GO:0016410 - N-acyltransferase activity [Evidence IEA]
GO:0042158 - lipoprotein biosynthetic process [Evidence IEA]; GO:0006497 - protein lipidation [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF01727
SAM-SAH riboswitch; SAM riboswitches modulate the expression of downstream genes in response to levels of S-adenosylmethionine; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_009159912.1
GO:0004478 - methionine adenosyltransferase activity [Evidence IEA]
GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009175943.1
COORDINATES: similar to AA sequence:RefSeq:WP_011241799.1
GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0008176 - tRNA (guanine-N7-)-methyltransferase activity [Evidence IEA]
tRNA (guanine(46)-N(7))-methyltransferase TrmB
COORDINATES: similar to AA sequence:RefSeq:WP_009175841.1
GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
3-phosphoshikimate 1-carboxyvinyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_005978049.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0036431 - dCMP kinase activity [Evidence IEA]
GO:0006220 - pyrimidine nucleotide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008758241.1
COORDINATES: protein motif:HMM:NF017495.2
COORDINATES: protein motif:HMM:NF013345.2
COORDINATES: protein motif:HMM:TIGR01679.1
GO:0003885 - D-arabinono-1,4-lactone oxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007973348.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012655.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014873203.1
GO:0018817 - 2-oxo-hept-3-ene-1,7-dioate hydratase activity [Evidence IEA]
2-oxo-hepta-3-ene-1,7-dioic acid hydratase
COORDINATES: similar to AA sequence:RefSeq:WP_008554865.1
GO:0003824 - catalytic activity [Evidence IEA]
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010441601.1
GO:0008687 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase activity [Evidence IEA]; GO:0008198 - ferrous iron binding [Evidence IEA]
GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
3,4-dihydroxyphenylacetate 2,3-dioxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_006937125.1
GO:0018480 - 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase activity [Evidence IEA]
GO:1901023 - 4-hydroxyphenylacetate catabolic process [Evidence IEA]
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_005977016.1
GO:0016655 - oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [Evidence IEA]
GO:0006814 - sodium ion transport [Evidence IEA]
Na(+)-translocating NADH-quinone reductase subunit A
COORDINATES: similar to AA sequence:RefSeq:WP_011241813.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016655 - oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [Evidence IEA]
GO:0022904 - respiratory electron transport chain [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
NADH:ubiquinone reductase (Na(+)-transporting) subunit B
COORDINATES: similar to AA sequence:RefSeq:WP_005977012.1
Na(+)-translocating NADH-quinone reductase subunit C
COORDINATES: similar to AA sequence:RefSeq:WP_008208348.1
NADH:ubiquinone reductase (Na(+)-transporting) subunit D
COORDINATES: similar to AA sequence:RefSeq:NP_251685.1
NADH:ubiquinone reductase (Na(+)-transporting) subunit E
COORDINATES: similar to AA sequence:RefSeq:WP_019296951.1
NADH:ubiquinone reductase (Na(+)-transporting) subunit F
COORDINATES: similar to AA sequence:RefSeq:WP_008558203.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296965.1
COORDINATES: similar to AA sequence:RefSeq:WP_005976995.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO:0017013 - protein flavinylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558301.1
COORDINATES: protein motif:HMM:NF012422.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF040606.1
COORDINATES: similar to AA sequence:RefSeq:WP_008759020.1
COORDINATES: similar to AA sequence:RefSeq:WP_011241825.1
COORDINATES: similar to AA sequence:RefSeq:WP_009830845.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_008557320.1
GO:0018578 - protocatechuate 3,4-dioxygenase activity [Evidence IEA]
GO:0046278 - 3,4-dihydroxybenzoate metabolic process [Evidence IEA]
protocatechuate 3,4-dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_006939027.1
protocatechuate 3,4-dioxygenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_019294946.1
GO:0047575 - 4-carboxymuconolactone decarboxylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005630128.1
GO:0018659 - 4-hydroxybenzoate 3-monooxygenase activity [Evidence IEA]
GO:0018874 - benzoate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020042691.1
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific [Evidence IEA]
GO:0019619 - 3,4-dihydroxybenzoate catabolic process [Evidence IEA]; GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011750449.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294814.1
GO:0050304 - nitrous-oxide reductase activity [Evidence IEA]
GO:0019333 - denitrification pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011241835.1
nitrous oxide reductase family maturation protein NosD
COORDINATES: similar to AA sequence:RefSeq:WP_005977218.1
COORDINATES: similar to AA sequence:RefSeq:WP_011241837.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008554266.1
nitrous oxide reductase accessory protein NosL
COORDINATES: similar to AA sequence:RefSeq:WP_013963006.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294836.1
COORDINATES: similar to AA sequence:RefSeq:WP_008209508.1
GO:0004047 - aminomethyltransferase activity [Evidence IEA]
GO:0006546 - glycine catabolic process [Evidence IEA]
glycine cleavage system aminomethyltransferase GcvT
COORDINATES: similar to AA sequence:RefSeq:WP_008557313.1
GO:0019464 - glycine decarboxylation via glycine cleavage system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014889456.1
GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IEA]
aminomethyl-transferring glycine dehydrogenase
COORDINATES: protein motif:HMM:NF024242.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011241845.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007119723.1
GO:0047689 - aspartate racemase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014880788.1
COORDINATES: similar to AA sequence:RefSeq:WP_008555557.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807689.1
5-guanidino-2-oxopentanoate decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_007117760.1
pyridoxal phosphate-dependent aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008563404.1
TetR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009815622.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889375.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019294810.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015837 - amine transport [Evidence IEA]
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009815625.1
COORDINATES: similar to AA sequence:RefSeq:WP_009810563.1
COORDINATES: similar to AA sequence:RefSeq:WP_019295067.1
low molecular weight phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005978442.1
COORDINATES: similar to AA sequence:RefSeq:WP_005978440.1
COORDINATES: similar to AA sequence:RefSeq:WP_008553470.1
carbon-nitrogen hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:YP_002517801.2
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011241861.1
COORDINATES: similar to AA sequence:RefSeq:WP_009176071.1
COORDINATES: similar to AA sequence:RefSeq:WP_011241863.1
GO:0008270 - zinc ion binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_008279220.1
COORDINATES: similar to AA sequence:RefSeq:WP_012041523.1
COORDINATES: protein motif:HMM:NF025638.2
COORDINATES: similar to AA sequence:RefSeq:WP_009762880.1
COORDINATES: similar to AA sequence:RefSeq:WP_009506120.1
COORDINATES: similar to AA sequence:RefSeq:WP_009506118.1
COORDINATES: protein motif:HMM:NF024872.2
COORDINATES: protein motif:HMM:NF017717.2
COORDINATES: similar to AA sequence:RefSeq:WP_020043694.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611977.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS5-like element ISSpo7 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_003816713.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611975.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009176103.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005615893.1
COORDINATES: similar to AA sequence:RefSeq:WP_011537183.1
COORDINATES: similar to AA sequence:RefSeq:WP_005615888.1
COORDINATES: similar to AA sequence:RefSeq:WP_020294626.1
COORDINATES: protein motif:HMM:NF014684.2
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_018270862.1
COORDINATES: similar to AA sequence:RefSeq:WP_018303531.1
COORDINATES: protein motif:HMM:NF012235.2
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012045199.1
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF025887.2
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018855295.1
COORDINATES: similar to AA sequence:RefSeq:WP_016787030.1
COORDINATES: protein motif:HMM:NF024092.2
COORDINATES: similar to AA sequence:RefSeq:WP_007673281.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003291498.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016356.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612406.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024212.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005861883.1
COORDINATES: protein motif:HMM:NF024675.2
COORDINATES: similar to AA sequence:RefSeq:WP_014496302.1
indolepyruvate oxidoreductase subunit beta family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005861877.1
indolepyruvate ferredoxin oxidoreductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_012976303.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006938529.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013953708.1
COORDINATES: similar to AA sequence:RefSeq:WP_019938811.1
COORDINATES: similar to AA sequence:RefSeq:WP_011241899.1
COORDINATES: similar to AA sequence:RefSeq:WP_008903747.1
COORDINATES: similar to AA sequence:RefSeq:WP_005861521.1
GO:0005215 - transporter activity [Evidence IEA]
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009573181.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_011456629.1
GO:0042597 - periplasmic space [Evidence IEA]
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011156928.1
COORDINATES: similar to AA sequence:RefSeq:WP_011241905.1
IS5-like element ISSpo9 family transposase
COORDINATES: protein motif:HMM:NF024180.2
COORDINATES: protein motif:HMM:NF024573.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006938514.1
COORDINATES: similar to AA sequence:RefSeq:WP_005861858.1
GO:0016812 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005861856.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_005861854.1
COORDINATES: similar to AA sequence:RefSeq:WP_005861852.1
COORDINATES: similar to AA sequence:RefSeq:WP_011086185.1
GO:0019439 - aromatic compound catabolic process [Evidence IEA]; GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
aromatic-ring-hydroxylating dioxygenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_012043360.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008968260.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007668202.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_012187268.1
COORDINATES: similar to AA sequence:RefSeq:WP_005626392.1
COORDINATES: similar to AA sequence:RefSeq:WP_005978460.1
GO:0008760 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity [Evidence IEA]
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_010441087.1
COORDINATES: similar to AA sequence:RefSeq:WP_008756619.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001484.0
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_005617048.1
COORDINATES: similar to AA sequence:RefSeq:WP_008887615.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294506.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558487.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_009807823.1
COORDINATES: similar to AA sequence:RefSeq:WP_009816496.1
COORDINATES: similar to AA sequence:RefSeq:WP_012329917.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296955.1
COORDINATES: similar to AA sequence:RefSeq:WP_009815456.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
PLP-dependent aminotransferase family protein
COORDINATES: protein motif:HMM:NF024039.2
COORDINATES: protein motif:HMM:NF012264.2
COORDINATES: protein motif:HMM:NF015131.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025910.2
COORDINATES: protein motif:HMM:TIGR03805.1
parallel beta-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012321.2
COORDINATES: similar to AA sequence:RefSeq:WP_008554838.1
putative sulfate exporter family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_011241939.1
COORDINATES: similar to AA sequence:RefSeq:WP_008555758.1
COORDINATES: similar to AA sequence:RefSeq:WP_009804486.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018690001.1
COORDINATES: similar to AA sequence:RefSeq:WP_009804488.1
TRAP transporter substrate-binding protein DctP
COORDINATES: similar to AA sequence:RefSeq:WP_009804489.1
GO:0004420 - hydroxymethylglutaryl-CoA reductase (NADPH) activity [Evidence IEA]
GO:0016054 - organic acid catabolic process [Evidence IEA]
hydroxymethylglutaryl-CoA reductase, degradative
COORDINATES: protein motif:HMM:NF012382.2
COORDINATES: similar to AA sequence:RefSeq:WP_019296986.1
COORDINATES: similar to AA sequence:RefSeq:WP_008546398.1
TAXI family TRAP transporter solute-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011456000.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558284.1
COORDINATES: similar to AA sequence:RefSeq:WP_019963946.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0043546 - molybdopterin cofactor binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018699608.1
COORDINATES: similar to AA sequence:RefSeq:WP_010442377.1
COORDINATES: similar to AA sequence:RefSeq:WP_012561988.1
hexameric tyrosine-coordinated heme protein
COORDINATES: similar to AA sequence:RefSeq:WP_014889533.1
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011518606.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030151 - molybdenum ion binding [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012402.2
COORDINATES: similar to AA sequence:RefSeq:WP_009760301.1
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_014286404.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006938184.1
COORDINATES: similar to AA sequence:RefSeq:WP_014875434.1
formate/nitrite transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008205214.1
COORDINATES: similar to AA sequence:RefSeq:WP_008205211.1
COORDINATES: similar to AA sequence:RefSeq:WP_008205210.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_008205208.1
COORDINATES: similar to AA sequence:RefSeq:WP_008205206.1
COORDINATES: similar to AA sequence:RefSeq:WP_008205204.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
cytochrome-c oxidase, cbb3-type subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_014875441.1
CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone
COORDINATES: similar to AA sequence:RefSeq:WP_014875442.1
cytochrome-c oxidase, cbb3-type subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_014875443.1
cytochrome-c oxidase, cbb3-type subunit I
COORDINATES: protein motif:HMM:NF021472.2
COORDINATES: similar to AA sequence:RefSeq:WP_008205198.1
COORDINATES: similar to AA sequence:RefSeq:WP_011241972.1
GO:0020037 - heme binding [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013500805.1
GO:0003870 - 5-aminolevulinate synthase activity [Evidence IEA]
GO:0006783 - heme biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: protein motif:HMM:NF015853.2
cytochrome c-type biogenesis protein CcmH
COORDINATES: similar to AA sequence:RefSeq:WP_007233769.1
DsbE family thiol:disulfide interchange protein
COORDINATES: protein motif:HMM:NF007691.0
COORDINATES: protein motif:HMM:TIGR04392.1
COORDINATES: similar to AA sequence:RefSeq:WP_018407712.1
COORDINATES: similar to AA sequence:RefSeq:WP_010441090.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024758.2
trypsin-like peptidase domain-containing protein
COORDINATES: protein motif:HMM:NF012311.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012257.2
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: protein motif:HMM:NF012437.2
adenylate/guanylate cyclase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012650378.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015500079.1
COORDINATES: similar to AA sequence:RefSeq:WP_005976948.1
COORDINATES: similar to AA sequence:RefSeq:WP_014881246.1
GO:0005436 - sodium:phosphate symporter activity [Evidence IEA]
GO:0044341 - sodium-dependent phosphate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005977173.1
cytochrome C oxidase subunit IV family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005977175.1
COORDINATES: similar to AA sequence:RefSeq:WP_010443112.1
COORDINATES: similar to AA sequence:RefSeq:WP_010443111.1
COORDINATES: similar to AA sequence:RefSeq:WP_011241995.1
COORDINATES: similar to AA sequence:RefSeq:WP_011567810.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014875952.1
COORDINATES: similar to AA sequence:RefSeq:WP_010443107.1
COORDINATES: similar to AA sequence:RefSeq:WP_013651333.1
COORDINATES: similar to AA sequence:RefSeq:WP_020593498.1
GO:0004851 - uroporphyrin-III C-methyltransferase activity [Evidence IEA]
GO:0019354 - siroheme biosynthetic process [Evidence IEA]
uroporphyrinogen-III C-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_010393306.1
COORDINATES: similar to AA sequence:RefSeq:WP_010443101.1
COORDINATES: similar to AA sequence:RefSeq:WP_005977200.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011567818.1
COORDINATES: similar to AA sequence:RefSeq:WP_010443098.1
COORDINATES: similar to AA sequence:RefSeq:WP_010443097.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0006783 - heme biosynthetic process [Evidence IEA]; GO:0046500 - S-adenosylmethionine metabolic process [Evidence IEA]
heme d1 biosynthesis radical SAM protein NirJ
COORDINATES: similar to AA sequence:RefSeq:WP_013962996.1
COORDINATES: similar to AA sequence:RefSeq:WP_010443095.1
COORDINATES: similar to AA sequence:RefSeq:WP_014876133.1
COORDINATES: similar to AA sequence:RefSeq:WP_015495299.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
glycine betaine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014876131.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
glycine betaine/L-proline ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014876130.1
COORDINATES: similar to AA sequence:RefSeq:WP_015495302.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014878832.1
GO:0008783 - agmatinase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019297422.1
COORDINATES: similar to AA sequence:RefSeq:WP_019297421.1
sigma-54 dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005857180.1
C4-dicarboxylate TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011242018.1
COORDINATES: similar to AA sequence:RefSeq:WP_010442337.1
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003572271.1
GO:0016787 - hydrolase activity [Evidence IEA]
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013960675.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011536940.1
COORDINATES: similar to AA sequence:RefSeq:WP_012179111.1
GO:0009436 - glyoxylate catabolic process [Evidence IEA]; GO:0071704 - organic substance metabolic process [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012179112.1
COORDINATES: similar to AA sequence:RefSeq:WP_006390524.1
GO:0050570 - 4-hydroxythreonine-4-phosphate dehydrogenase activity [Evidence IEA]; GO:0050897 - cobalt ion binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0042823 - pyridoxal phosphate biosynthetic process [Evidence IEA]; GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
4-hydroxythreonine-4-phosphate dehydrogenase PdxA
COORDINATES: similar to AA sequence:RefSeq:WP_008759519.1
COORDINATES: similar to AA sequence:RefSeq:WP_015917933.1
COORDINATES: similar to AA sequence:RefSeq:WP_019965587.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0005488 - binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
DctP family TRAP transporter solute-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009845881.1
COORDINATES: similar to AA sequence:RefSeq:WP_019965585.1
COORDINATES: protein motif:HMM:NF012742.2
COORDINATES: similar to AA sequence:RefSeq:WP_008759510.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008759521.1
COORDINATES: similar to AA sequence:RefSeq:WP_009464560.1
COORDINATES: similar to AA sequence:RefSeq:WP_014762853.1
COORDINATES: similar to AA sequence:RefSeq:WP_011242036.1
COORDINATES: similar to AA sequence:RefSeq:WP_008759537.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008759558.1
COORDINATES: similar to AA sequence:RefSeq:WP_019298496.1
COORDINATES: similar to AA sequence:RefSeq:WP_019298495.1
COORDINATES: similar to AA sequence:RefSeq:WP_008282004.1
COORDINATES: similar to AA sequence:RefSeq:WP_019646393.1
COORDINATES: similar to AA sequence:RefSeq:WP_019646392.1
COORDINATES: similar to AA sequence:RefSeq:WP_018688485.1
COORDINATES: similar to AA sequence:RefSeq:WP_011242045.1
COORDINATES: similar to AA sequence:RefSeq:WP_005977107.1
COORDINATES: similar to AA sequence:RefSeq:WP_014873806.1
COORDINATES: similar to AA sequence:RefSeq:WP_011242048.1
COORDINATES: similar to AA sequence:RefSeq:WP_014873804.1
COORDINATES: similar to AA sequence:RefSeq:WP_014873803.1
COORDINATES: similar to AA sequence:RefSeq:WP_011242051.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]; GO:0009404 - toxin metabolic process [Evidence IEA]
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_006199469.1
COORDINATES: similar to AA sequence:RefSeq:WP_009178412.1
COORDINATES: similar to AA sequence:RefSeq:WP_002719328.1
GO:0003867 - 4-aminobutyrate transaminase activity [Evidence IEA]
GO:0009448 - gamma-aminobutyric acid metabolic process [Evidence IEA]
4-aminobutyrate--2-oxoglutarate transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_009178389.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_005853352.1
GO:0016301 - kinase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008554888.1
COORDINATES: similar to AA sequence:RefSeq:WP_008279509.1
COORDINATES: similar to AA sequence:RefSeq:WP_008555918.1
COORDINATES: similar to AA sequence:RefSeq:WP_017006024.1
COORDINATES: similar to AA sequence:RefSeq:WP_014881429.1
COORDINATES: similar to AA sequence:RefSeq:WP_010440647.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558320.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008209351.1
COORDINATES: similar to AA sequence:RefSeq:WP_008561091.1
COORDINATES: similar to AA sequence:RefSeq:WP_010441756.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010441543.1
COORDINATES: similar to AA sequence:RefSeq:WP_008279799.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019297537.1
COORDINATES: similar to AA sequence:RefSeq:WP_008758577.1
COORDINATES: similar to AA sequence:RefSeq:WP_013960172.1
COORDINATES: similar to AA sequence:RefSeq:WP_011242071.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956972.1
GO:0003882 - CDP-diacylglycerol-serine O-phosphatidyltransferase activity [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-diacylglycerol--serine O-phosphatidyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008559890.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009158121.1
GO:0036361 - racemase activity, acting on amino acids and derivatives [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
aspartate/glutamate racemase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013962533.1
COORDINATES: similar to AA sequence:RefSeq:WP_011567151.1
COORDINATES: similar to AA sequence:RefSeq:WP_009829014.1
COORDINATES: similar to AA sequence:RefSeq:WP_011567149.1
COORDINATES: similar to AA sequence:RefSeq:WP_013962531.1
COORDINATES: similar to AA sequence:RefSeq:WP_009160883.1
COORDINATES: similar to AA sequence:RefSeq:WP_010442312.1
COORDINATES: similar to AA sequence:RefSeq:WP_008758513.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007803648.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558403.1
COORDINATES: similar to AA sequence:RefSeq:WP_010441422.1
GO:0003729 - mRNA binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019296956.1
FAD-dependent tricarballylate dehydrogenase TcuA
COORDINATES: similar to AA sequence:RefSeq:WP_019296957.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296958.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296959.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296960.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_019296961.1
trimethylamine methyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019296962.1
COORDINATES: similar to AA sequence:RefSeq:WP_008204196.1
GO:0004450 - isocitrate dehydrogenase (NADP+) activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011910393.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009177396.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011540051.1
GO:0018826 - methionine gamma-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019346 - transsulfuration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011995892.1
COORDINATES: similar to AA sequence:RefSeq:WP_014873199.1
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_017967937.1
COORDINATES: similar to AA sequence:RefSeq:WP_014873621.1
COORDINATES: similar to AA sequence:RefSeq:WP_010443116.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558040.1
COORDINATES: similar to AA sequence:RefSeq:WP_007676285.1
COORDINATES: similar to AA sequence:RefSeq:WP_018438673.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014430.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - DNA transposition [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611656.1
COORDINATES: similar to AA sequence:RefSeq:WP_009815243.1
GO:0016746 - acyltransferase activity [Evidence IEA]
GO:0009404 - toxin metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007002862.1
GO:0008929 - methylglyoxal synthase activity [Evidence IEA]
GO:0019242 - methylglyoxal biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009504980.1
GO:0008675 - 2-dehydro-3-deoxy-phosphogluconate aldolase activity [Evidence IEA]; GO:0008700 - 4-hydroxy-2-oxoglutarate aldolase activity [Evidence IEA]
GO:0009255 - Entner-Doudoroff pathway through 6-phosphogluconate [Evidence IEA]; GO:0009084 - glutamine family amino acid biosynthetic process [Evidence IEA]
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_018699732.1
COORDINATES: similar to AA sequence:RefSeq:WP_005850424.1
GO:0016836 - hydro-lyase activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009825539.1
COORDINATES: similar to AA sequence:RefSeq:WP_005850421.1
COORDINATES: similar to AA sequence:RefSeq:WP_018688955.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018688953.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010621.1
COORDINATES: protein motif:HMM:TIGR01490.1
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008941525.1
GO:0016853 - isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019049602.1
COORDINATES: protein motif:HMM:NF015700.2
AfsA-related hotdog domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016436516.1
COORDINATES: similar to AA sequence:RefSeq:WP_015835858.1
COORDINATES: similar to AA sequence:RefSeq:WP_020038282.1
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010673464.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: protein motif:HMM:NF019310.2
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019297918.1
COORDINATES: similar to AA sequence:RefSeq:WP_005980035.1
COORDINATES: similar to AA sequence:RefSeq:WP_008555224.1
COORDINATES: similar to AA sequence:RefSeq:WP_014873197.1
COORDINATES: similar to AA sequence:RefSeq:WP_015888073.1
COORDINATES: protein motif:HMM:NF013775.2
COORDINATES: similar to AA sequence:RefSeq:WP_008556175.1
Tm-1-like ATP-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009573615.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009573616.1
COORDINATES: similar to AA sequence:RefSeq:WP_009808012.1
COORDINATES: similar to AA sequence:RefSeq:WP_009814391.1
COORDINATES: similar to AA sequence:RefSeq:WP_009573641.1
COORDINATES: similar to AA sequence:RefSeq:WP_008555744.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008554581.1
COORDINATES: similar to AA sequence:RefSeq:WP_008555538.1
COORDINATES: similar to AA sequence:RefSeq:WP_008282883.1
COORDINATES: similar to AA sequence:RefSeq:WP_008553280.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820143.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
ABC transporter transmembrane domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007601267.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827246.1
COORDINATES: similar to AA sequence:RefSeq:WP_009812855.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
copper resistance system multicopper oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_007813847.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819753.1
COORDINATES: similar to AA sequence:RefSeq:WP_007813843.1
COORDINATES: similar to AA sequence:RefSeq:WP_008034265.1
COORDINATES: similar to AA sequence:RefSeq:WP_007813839.1
COORDINATES: similar to AA sequence:RefSeq:WP_008034269.1
COORDINATES: similar to AA sequence:RefSeq:WP_006937075.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008281557.1
COORDINATES: similar to AA sequence:RefSeq:WP_011569939.1
COORDINATES: similar to AA sequence:RefSeq:WP_013046664.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008281554.1
COORDINATES: similar to AA sequence:RefSeq:WP_009816228.1
COORDINATES: similar to AA sequence:RefSeq:WP_009816227.1
COORDINATES: similar to AA sequence:RefSeq:WP_009450210.1
COORDINATES: similar to AA sequence:RefSeq:WP_020591187.1
COORDINATES: protein motif:HMM:NF024938.2
COORDINATES: similar to AA sequence:RefSeq:WP_005645241.1
COORDINATES: similar to AA sequence:RefSeq:WP_008229739.1
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007090418.1
COORDINATES: similar to AA sequence:RefSeq:WP_003108980.1
COORDINATES: similar to AA sequence:RefSeq:WP_006448658.1
COORDINATES: similar to AA sequence:RefSeq:WP_018688998.1
COORDINATES: similar to AA sequence:RefSeq:WP_009805920.1
COORDINATES: similar to AA sequence:RefSeq:WP_012029342.1
COORDINATES: similar to AA sequence:RefSeq:WP_008561439.1
COORDINATES: similar to AA sequence:RefSeq:WP_014875246.1
COORDINATES: similar to AA sequence:RefSeq:WP_018689009.1
COORDINATES: similar to AA sequence:RefSeq:WP_005861472.1
COORDINATES: similar to AA sequence:RefSeq:WP_008559843.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0003959 - NADPH dehydrogenase activity [Evidence IEA]
bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007090666.1
COORDINATES: similar to AA sequence:RefSeq:WP_011539547.1
GO:0020037 - heme binding [Evidence IEA]; GO:0004833 - tryptophan 2,3-dioxygenase activity [Evidence IEA]
GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IEA]
tryptophan 2,3-dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014880036.1
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_008182728.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005978469.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011242192.1
COORDINATES: similar to AA sequence:RefSeq:WP_008207662.1
COORDINATES: similar to AA sequence:RefSeq:WP_008553461.1
COORDINATES: similar to AA sequence:RefSeq:WP_008207656.1
COORDINATES: similar to AA sequence:RefSeq:WP_005666564.1
GO:0009058 - biosynthetic process [Evidence IEA]
PhzF family phenazine biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_010443195.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014058466.1
COORDINATES: similar to AA sequence:RefSeq:WP_005978507.1
COORDINATES: similar to AA sequence:RefSeq:WP_008251216.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008296152.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008555493.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_010437973.1
COORDINATES: similar to AA sequence:RefSeq:WP_008205079.1
COORDINATES: similar to AA sequence:RefSeq:WP_010437975.1
COORDINATES: similar to AA sequence:RefSeq:WP_009811045.1
COORDINATES: similar to AA sequence:RefSeq:WP_009825139.1
COORDINATES: similar to AA sequence:RefSeq:WP_009811047.1
COORDINATES: similar to AA sequence:RefSeq:WP_005849443.1
GO:0047570 - 3-oxoadipate enol-lactonase activity [Evidence IEA]
GO:0042952 - beta-ketoadipate pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008555373.1
COORDINATES: similar to AA sequence:RefSeq:WP_005978096.1
COORDINATES: similar to AA sequence:RefSeq:WP_005978092.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014879132.1
COORDINATES: similar to AA sequence:RefSeq:WP_005676343.1
COORDINATES: similar to AA sequence:RefSeq:WP_014879134.1
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024860.2
COORDINATES: similar to AA sequence:RefSeq:WP_007120814.1
GO:0008693 - (3R)-3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity [Evidence IEA]
bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_005849434.1
COORDINATES: similar to AA sequence:RefSeq:WP_008555275.1