Chryseobacterium balustinum strain KC_1863 plasmid unnamed, complete sequence.
Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae; Chryseobacterium group; Chryseobacterium.
Proposal to divide the Flavobacteriaceae and reorganize its genera based on Amino Acid Identity values calculated from whole genome sequences
Submitted (09-NOV-2018) Bacterial Special Pathogens Branch, Centers for Disease Control, 1600 Clifton Road, Atlanta, GA 30329, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP033935.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2018\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nReference-guided Assembly :: N/A (de novo assembly)\nGenome Coverage :: 99.26x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 00:30:26\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,624\nCDSs (total) :: 4,520\nGenes (coding) :: 4,437\nCDSs (with protein) :: 4,437\nGenes (RNA) :: 104\nrRNAs :: 8, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 8, 8 (5S, 16S, 23S)\ntRNAs :: 77\nncRNAs :: 3\nPseudo Genes (total) :: 83\nCDSs (without protein) :: 83\nPseudo Genes (ambiguous residues) :: 0 of 83\nPseudo Genes (frameshifted) :: 55 of 83\nPseudo Genes (incomplete) :: 28 of 83\nPseudo Genes (internal stop) :: 10 of 83\nPseudo Genes (multiple problems) :: 9 of 83\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012464.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005390110.1
COORDINATES: protein motif:HMM:NF027613.2
COORDINATES: similar to AA sequence:RefSeq:WP_002979777.1
COORDINATES: protein motif:HMM:NF037494.2
COORDINATES: protein motif:HMM:NF014036.2
COORDINATES: protein motif:HMM:NF024676.2
COORDINATES: protein motif:HMM:NF012234.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015210.2
COORDINATES: similar to AA sequence:RefSeq:WP_016194671.1
COORDINATES: similar to AA sequence:RefSeq:WP_016523971.1
COORDINATES: similar to AA sequence:RefSeq:WP_002981634.1
COORDINATES: protein motif:HMM:NF024982.2
COORDINATES: protein motif:HMM:NF023922.2
COORDINATES: protein motif:HMM:NF040179.1
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF012422.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: protein motif:HMM:NF022077.2
COORDINATES: protein motif:HMM:NF024554.2
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: protein motif:HMM:NF026253.2
endonuclease/exonuclease/phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007846375.1
COORDINATES: protein motif:HMM:NF019997.2
zincin-like metallopeptidase domain-containing protein
COORDINATES: protein motif:HMM:NF040155.1
COORDINATES: similar to AA sequence:RefSeq:WP_002669295.1
COORDINATES: protein motif:HMM:NF025639.2
COORDINATES: similar to AA sequence:RefSeq:WP_002667619.1
COORDINATES: protein motif:HMM:NF024991.2
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF012307.2
reverse transcriptase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004918625.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010600966.1
COORDINATES: similar to AA sequence:RefSeq:WP_010600967.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014707154.1
class I SAM-dependent DNA methyltransferase
COORDINATES: protein motif:HMM:NF021427.2
COORDINATES: protein motif:HMM:NF012492.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004918596.1
COORDINATES: similar to AA sequence:RefSeq:WP_015026364.1
COORDINATES: similar to AA sequence:RefSeq:WP_009092671.1
COORDINATES: similar to AA sequence:RefSeq:WP_009092672.1
COORDINATES: similar to AA sequence:RefSeq:WP_007842405.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
RHS repeat-associated core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007660951.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611811.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF024736.2
COORDINATES: similar to AA sequence:RefSeq:WP_007844625.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844627.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_006259851.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007844634.1
COORDINATES: similar to AA sequence:RefSeq:WP_007844658.1
COORDINATES: similar to AA sequence:RefSeq:WP_007845506.1
COORDINATES: similar to AA sequence:RefSeq:WP_012025746.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR04183.1
T9SS type A sorting domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014791663.1
COORDINATES: protein motif:HMM:NF019106.2