Endosymbiont 'TC1' of Trimyema compressum strain not applicalbe isolate TC1 plasmid pTC1, complete sequence.
endosymbiont 'TC1' of Trimyema compressum
Complete genome sequence of the intracellular bacterial symbiont 'TC1' in the anaerobic ciliate Trimyema compressum
Submitted (01-MAR-2016) Tropical Biosphere Research Center, University of the Ryukyus, 1 Senbaru, Nishihara town, Nakagami gun, Okinawa 903-0213, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nCP014607.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 8.1\nGenome Coverage :: missing\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/03/2023 04:06:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,162\nCDSs (total) :: 2,116\nGenes (coding) :: 1,879\nCDSs (with protein) :: 1,879\nGenes (RNA) :: 46\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 36\nncRNAs :: 4\nPseudo Genes (total) :: 237\nCDSs (without protein) :: 237\nPseudo Genes (ambiguous residues) :: 0 of 237\nPseudo Genes (frameshifted) :: 169 of 237\nPseudo Genes (incomplete) :: 63 of 237\nPseudo Genes (internal stop) :: 109 of 237\nPseudo Genes (multiple problems) :: 96 of 237\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF013235.2
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF015736.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
DnaB-like helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014930127.1
COORDINATES: protein motif:HMM:NF018751.2
COORDINATES: similar to AA sequence:RefSeq:WP_014930125.1
COORDINATES: protein motif:HMM:NF013670.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019381618.1
GO:0140911 - pore-forming activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019126.2
COORDINATES: protein motif:HMM:TIGR01603.1
COORDINATES: protein motif:HMM:NF016754.2
COORDINATES: protein motif:HMM:TIGR01560.2
GO:0016032 - viral process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01554.2
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF016471.2
GO:0008233 - peptidase activity [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01537.1
COORDINATES: similar to AA sequence:RefSeq:WP_014823278.1
nucleotide modification associated domain-containing protein
COORDINATES: protein motif:HMM:NF015321.2
COORDINATES: protein motif:HMM:TIGR01558.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
phage terminase small subunit P27 family
COORDINATES: protein motif:HMM:NF013964.2
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF023802.2
COORDINATES: protein motif:HMM:NF037979.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]