Methanocaldococcus jannaschii DSM 2661 plasmid pDSM2661_2, complete sequence.
Archaea; Euryarchaeota; Methanomada group; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus.
Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii
Submitted (05-SEP-1996) The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, Maryland 20850, USA
The starts of translation for some of the genes in the Methanococcus jannaschii extra-chromosomal element have been extended.
Submitted (20-AUG-1996) The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, Maryland 20850, USA
REFSEQ INFORMATION: The reference sequence is identical to\nL77119.1.\nAddress all correspondence to:\nJ. Craig Venter\nThe Institute for Genomic Research\n9712 Medical Center Dr,\nRockville, MD, 20850, USA\n\nCarol J. Bult is with the National Center for Geographic\nInformation and Analysis, University of Maine, Orono, ME.\n\nJudith A. Blake is with the Jackson Laboratory, Bar Harbor,\nME,04649-1500\n\nHamilton O. Smith is with the Johns Hopkins University School of\nMedicine, Baltimore, MD, 21205.\n\nGary J. Olson, Claudia I. Reich, Brian P. Klaine, and Carl R. Woese\nare with Microbiology Department, University of Illinois,\nChampaign-Urbana, IL, 61801.\n\nJoseph M. Merrick is with the State University of New York,\nDepartment of Microbiology, Buffalo, NY, 14214.\n\nAll other authors are with The Institute for Genomic Research, 9712\nMedical Center Dr, Rockville, MD, 20850.\n\nPredicted open reading frames were determined using GeneMark\nsoftware, kindly supplied by Mark Borodovsky, Georgia Institute of\nTechnology, Atlanta, GA, 30332.\ne-mail: mark@amber.gatech.edu\n\nSubmission and annotation: Owen White\ne-mail: owhite@tigr.org\n\nBiological role information, putative identifications, sequence\nalignments, on-line name and sequence search capability are\navailable at TIGR's World Wide Web site.\n(URL: http://www.tigr.org/).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/24/2023 01:03:50\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,904\nCDSs (total) :: 1,859\nGenes (coding) :: 1,818\nCDSs (with protein) :: 1,818\nGenes (RNA) :: 45\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 37\nncRNAs :: 2\nPseudo Genes (total) :: 41\nCDSs (without protein) :: 41\nPseudo Genes (ambiguous residues) :: 0 of 41\nPseudo Genes (frameshifted) :: 30 of 41\nPseudo Genes (incomplete) :: 16 of 41\nPseudo Genes (internal stop) :: 2 of 41\nPseudo Genes (multiple problems) :: 6 of 41\nCRISPR Arrays :: 15\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Methanocaldococcus jannaschii
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
transglutaminase-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010890094.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010890095.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890096.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890097.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890098.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890099.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890100.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890101.1
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010890103.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890104.1