Methanocaldococcus jannaschii DSM 2661 plasmid pDSM2661_2, complete sequence.
type: Entry
definition: Methanocaldococcus jannaschii DSM 2661 plasmid pDSM2661_2, complete sequence.
sequence version: NC_001733.1
sequence date: 2023-04-24
sequence: sequence
division: CON
label: NC_001733.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02603984
keyword: RefSeq
source: Methanocaldococcus jannaschii DSM 2661
organism: Methanocaldococcus jannaschii DSM 2661
taxonomy: Archaea; Euryarchaeota; Methanomada group; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus.
reference: 1
references: 8688087
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nL77119.1.\nAddress all correspondence to:\nJ. Craig Venter\nThe Institute for Genomic Research\n9712 Medical Center Dr,\nRockville, MD, 20850, USA\n\nCarol J. Bult is with the National Center for Geographic\nInformation and Analysis, University of Maine, Orono, ME.\n\nJudith A. Blake is with the Jackson Laboratory, Bar Harbor,\nME,04649-1500\n\nHamilton O. Smith is with the Johns Hopkins University School of\nMedicine, Baltimore, MD, 21205.\n\nGary J. Olson, Claudia I. Reich, Brian P. Klaine, and Carl R. Woese\nare with Microbiology Department, University of Illinois,\nChampaign-Urbana, IL, 61801.\n\nJoseph M. Merrick is with the State University of New York,\nDepartment of Microbiology, Buffalo, NY, 14214.\n\nAll other authors are with The Institute for Genomic Research, 9712\nMedical Center Dr, Rockville, MD, 20850.\n\nPredicted open reading frames were determined using GeneMark\nsoftware, kindly supplied by Mark Borodovsky, Georgia Institute of\nTechnology, Atlanta, GA, 30332.\ne-mail: mark@amber.gatech.edu\n\nSubmission and annotation: Owen White\ne-mail: owhite@tigr.org\n\nBiological role information, putative identifications, sequence\nalignments, on-line name and sequence search capability are\navailable at TIGR's World Wide Web site.\n(URL: http://www.tigr.org/).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/24/2023 01:03:50\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,904\nCDSs (total) :: 1,859\nGenes (coding) :: 1,818\nCDSs (with protein) :: 1,818\nGenes (RNA) :…

sequence
subclass of: SO_0000155
sequence length: 16550
topology: circular
so has quality: SO_0000988
location: 1..16550
location: region:1-16550:1
RO_0002162: 243232

NC_001733
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02603984
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii
author: Bult, C.J.
author: White, O.
author: Olsen, G.J.
author: Zhou, L.
author: Fleischmann, R.D.
author: Sutton, G.G.
author: Blake, J.A.
author: FitzGerald, L.M.
author: Clayton, R.A.
author: Gocayne, J.D.
author: Kerlavage, A.R.
author: Dougherty, B.A.
author: Tomb, J.F.
author: Adams, M.D.
author: Reich, C.I.
author: Overbeek, R.
author: Kirkness, E.F.
author: Weinstock, K.G.
author: Merrick, J.M.
author: Glodek, A.
author: Scott, J.L.
author: Geoghagen, N.S.
author: Venter, J.C.
journal: Science
volume: 273
issue: 5278
pages: 1058-1073
year: 1996
pubmed: 8688087

8688087
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: White, O.
author: Kerlavage, A.R.
author: Adams, M.D.
author: Klenk, H.-P.
journal: Submitted (05-SEP-1996) The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, Maryland 20850, USA
comments: The starts of translation for some of the genes in the Methanococcus jannaschii extra-chromosomal element have been extended.

3
title: Direct Submission
author: Bult, C.J.
author: White, O.
author: Olsen, G.J.
author: Zhou, L.
author: Fleischmann, R.D.
author: Sutton, G.G.
author: Blake, J.A.
author: FitzGerald, L.M.
author: Clayton, R.A.
author: Gocayne, J.D.
author: Kerlavage, A.R.
author: Dougherty, B.A.
author: Tomb, J.-F.
author: Adams, M.D.
author: Reich, C.I.
author: Overbeek, R.
author: Kirkness, E.F.
author: Weinstock, K.G.
author: Merrick, J.M.
author: Glodek, A.
author: Scott, J.L.
author: Geoghagen, N.S.M.
author: Weidman, J.F.
author: Fuhrmann, J.L.
author: Presley, E.A.
author: Nguyen, D.
author: Utterback, T.R.
author: Kelley, J.M.
author: Peterson, J.D.
author: Sadow, P.W.
author: Hanna, M.C.
author: Cotton, M.D.
author: Hurst, M.A.
author: Roberts, K.M.
author: Kaine, B.P.
author: Borodovsky, M.
author: Klenk, H.-P.
author: Fraser, C.M.
author: Smith, H.O.
author: Woese, C.R.
author: Venter, J.C.
journal: Submitted (20-AUG-1996) The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, Maryland 20850, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16550:1
position: 16550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16550:1:source
so part of: sequence
organism: Methanocaldococcus jannaschii DSM 2661
mol type: genomic DNA
strain: DSM 2661
type material: type strain of Methanocaldococcus jannaschii
plasmid: pDSM2661_2

243232
type: Taxonomy
SIO_000068: taxonomy

MJ_RS09205
type: Gene
subclass of: SO_0000704
RO_0002162: 243232
locus tag: MJ_RS09205
old locus tag: MJ_ECS12
so part of: sequence
location: complement(join(15408..16550,1..57))
location: region:1-16550:-1
so has part: feature:1-57:-1:exon
so has part: feature:15408-16550:-1:exon
subclass of: SO_0000010

1450839
type: Gene
SIO_000068: ncbigene

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16550:-1
position: 16550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-57:-1:exon

position:57:-1
position: 57
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:15408-16550:-1:exon

position:15408:-1
position: 15408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MJ_RS09205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 243232
locus tag: MJ_RS09205
old locus tag: MJ_ECS12
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: transglutaminase-like domain-containing protein
translation: MNFVYIFLLLFIGVTILFIKLSHFLSIPSLKEIYSNEIKKLSEQLWENSIVETLNNILEWQETNIRYWMERAADSLIYYVIAAMLYGVVLLFMVLLLIIGFEIIINDIMVLILWVISAVVALLVLISLPSKYSQYLNNISMLLLVSIFTLYIFSENLIIISIISGLWVLILTLIVKYLFQCNGNFVSAIAMLHDTLCYDIKVSKILKYKKAVCRDYAKLTIALLSNLFPNYNLYLVTHPMHVAAAIEINGKIYVIDQRLPIREINTWIKIQSTNHRILGRGYKIYKIIRKKNGFDSQKENIEKYIDKNLLNEEYIKPNWDNIIKEIYEVMKSKKPNFEFELKNYAIWYDINDAIIKESLCRYIKNILRKEFCGNCSKIKDIELKQKGKDIVVHLQFKLG
SIO_010081: MJ_RS09205
subclass of: SO_0000673
so part of: MJ_RS09205
location: complement(join(15408..16550,1..57))
location: region:1-16550:-1
so has part: feature:1-57:-1:exon
so has part: feature:15408-16550:-1:exon

WP_064497007.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-57:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:15408-16550:-1:exon

MJ_RS09210
type: Gene
subclass of: SO_0000704
RO_0002162: 243232
locus tag: MJ_RS09210
so part of: sequence
location: complement(119..310)
location: region:119-310:-1
so has part: feature:119-310:-1:exon
subclass of: SO_0000010

27930021
type: Gene
SIO_000068: ncbigene

position:119:-1
position: 119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:310:-1
position: 310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:119-310:-1:exon

MJ_RS09210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 243232
locus tag: MJ_RS09210
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYWKKLLEGDLTEEEEEELKQLEEENLKTINEVYESIKGDKEINKLIKKIISHEWVRIIENGV
SIO_010081: MJ_RS09210
subclass of: SO_0000673
so part of: MJ_RS09210
location: complement(119..310)
location: region:119-310:-1
so has part: feature:119-310:-1:exon

WP_064497006.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:119-310:-1:exon

MJ_RS09215
type: Gene
subclass of: SO_0000704
RO_0002162: 243232
locus tag: MJ_RS09215
old locus tag: MJ_ECS01
old locus tag: MJECS01
so part of: sequence
location: complement(429..1259)
location: region:429-1259:-1
so has part: feature:429-1259:-1:exon
subclass of: SO_0000010

1450828
type: Gene
SIO_000068: ncbigene

position:429:-1
position: 429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1259:-1
position: 1259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:429-1259:-1:exon

MJ_RS09215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 243232
locus tag: MJ_RS09215
old locus tag: MJ_ECS01
old locus tag: MJECS01
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890094.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKFIFEKYYRHPINKYNGSKITPISQKNIFVVIKVELDDNELNNIHDEAKKLAEDVCEKNPSGDIRTEERKLLSSFCGLIAEKVVKQLITEKLMLIKDYIEIKGANVSNENFNYESHNDIEIHLSNDEIITIEIRSSIATKYDLNDILNKDFDILGSYTTSYKSKEHNKDYYFRIIFHNPGDYGYNPHLKKWEYNKRLENAFKQEKNKALDYFKNNVKVYFVGGCTFDDLENYGEHDDLKQKNAEYWIIRPITKGRDVLEILEILEKDILNKLGFL
SIO_010081: MJ_RS09215
subclass of: SO_0000673
so part of: MJ_RS09215
location: complement(429..1259)
location: region:429-1259:-1
so has part: feature:429-1259:-1:exon

WP_010890094.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:429-1259:-1:exon

MJ_RS09220
type: Gene
subclass of: SO_0000704
RO_0002162: 243232
locus tag: MJ_RS09220
old locus tag: MJ_ECS02
old locus tag: MJECS02
so part of: sequence
location: complement(1269..4805)
location: region:1269-4805:-1
so has part: feature:1269-4805:-1:exon
subclass of: SO_0000010

1450829
type: Gene
SIO_000068: ncbigene

position:1269:-1
position: 1269
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4805:-1
position: 4805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1269-4805:-1:exon

MJ_RS09220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 243232
locus tag: MJ_RS09220
old locus tag: MJ_ECS02
old locus tag: MJECS02
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890095.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO process: GO:0006306 - DNA methylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: N-6 DNA methylase
translation: MAQTKLCSDIEIPKEVYNKWKDFIKLVGNIILSIKQIPELEGKFKELLKKGRYNFKSDDFGGQLPEPFTRQKVIEPILEFLGYEFTSEISKKSPLGDRKIPDYRVSVFNKEILIEAEPLGSDLNKKDSGIHQVKEWLIIKSYGVDTGIATNGLEWVLLHYDDTIKEIRTLKELNLKSIFEYVLENKKDKDLENELKQVFSEFYYCFSKEYIEEYIEVATKNIKHKKEEITNEFYKEFVKLVFGFEDVKDVKKKDKSSSEKDKGTKKCLYNCIEAPPNTSELDKKKFAVLLMNRLIFIKFLEDKGIVPRDLLRRTYEDYKKSNVLINYYDAYLKPLFYEVLNTPEDERKENIRTNPYYKDIPYLNGGLFRSNNVPNELSFTIKDNEIIGEVINFLERYKFTLSTSEGSEEVELNPDILGYVYEKLINILAEKGQKGLGAYYTPDEITSYIAKNTIEPIVVERFKEIIKNWKINDINFSTLDEILNEDSKIAENKHILRAFLDELDKIRILDPAVGSGHFLISALKELLQIKKRIYYLLREEMDIYKEKLGIILNNLYGVDIDDIAVEIAKLRLWLALIENLDVEALKRGEVLLPNIEYNVRCGNSLVGWIDENLKQLSISYLCDNVRIMCVLEGLIINAHNSEERKKLKKAKELLEKRDGYVLDNYVEAYHLLYEVYRTSHGLKANLLKELLDEIRDSIYESVTPAYFAEIYQNGNNKKNNGKKSKKNRPRVEEFEKLKPFHWKIDFGWIIKEEGFDVIIGNPPYGNLLSPTEKEIMKRRDTPEFDIFVTFIVHSSKLLKNEGYLGFIIPSSFGTGVRYSNLRKELFTKMCLKKLIYLPFDVFSGAYVDNCIIILHKKPPKSEDLVLIYAFPKKTKKISFEFKNDLFIEYSKILNDPKCRIFPKSPEIYIILDKIKQNCRESLTYLEDLTESTIGILASKYKFSDKKENEYYLPYLEGNVYRYETKLKLKNYVDFSKHKNNEKLINLFMSPEKIFIRRIVNRQDRIMASYGNIEGVVKKDLYVFVLKPDTPINYFYLLGILNSELISYIYIGKSAIALKDDFRQTTLEELRELPIVIPKNKNIINALTQLSKLRFELNDKLNENDRIFLENIIDSLVYGIYFQDLIPKEELNEICNEINGIIKKYDEKSIDCLKYCQNIIKLLNTINTNELVRKIRNKN
SIO_010081: MJ_RS09220
subclass of: SO_0000673
so part of: MJ_RS09220
location: complement(1269..4805)
location: region:1269-4805:-1
so has part: feature:1269-4805:-1:exon

WP_244409577.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1269-4805:-1:exon

MJ_RS09225
type: Gene
subclass of: SO_0000704
RO_0002162: 243232
locus tag: MJ_RS09225
old locus tag: MJ_ECS03
old locus tag: MJECS03
so part of: sequence
location: complement(4848..5174)
location: region:4848-5174:-1
so has part: feature:4848-5174:-1:exon
subclass of: SO_0000010

1450830
type: Gene
SIO_000068: ncbigene

position:4848:-1
position: 4848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5174:-1
position: 5174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4848-5174:-1:exon

MJ_RS09225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 243232
locus tag: MJ_RS09225
old locus tag: MJ_ECS03
old locus tag: MJECS03
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890096.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF365 domain-containing protein
translation: MKIIFYASREEQGFYGEAEIEEVEFFENPMKILEKYKNNLFLTEEEFKKYIEDSNKKWGYGKKKKKPWIVIILKNIRKYPKVVKPKRFIPVCGKYVKEDEYEQILKKL
SIO_010081: MJ_RS09225
subclass of: SO_0000673
so part of: MJ_RS09225
location: complement(4848..5174)
location: region:4848-5174:-1
so has part: feature:4848-5174:-1:exon

WP_010890096.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4848-5174:-1:exon

MJ_RS09230
type: Gene
subclass of: SO_0000704
RO_0002162: 243232
locus tag: MJ_RS09230
old locus tag: MJ_ECS04
old locus tag: MJECS04
so part of: sequence
location: complement(5456..5863)
location: region:5456-5863:-1
so has part: feature:5456-5863:-1:exon
subclass of: SO_0000010

1450831
type: Gene
SIO_000068: ncbigene

position:5456:-1
position: 5456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5863:-1
position: 5863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5456-5863:-1:exon

MJ_RS09230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 243232
locus tag: MJ_RS09230
old locus tag: MJ_ECS04
old locus tag: MJECS04
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890097.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLKKAIIKLLGIDNYIEKIEELEGERKEIFENFEKLNKKLDNFENELNFIKKEIERIQLEFNNVINSNNNDYVSKKELNDIVNQLNTLSTLVNGLIINISHGNNLKESSNTVDDVKNRLLELLQSEKDYCITEIN
SIO_010081: MJ_RS09230
subclass of: SO_0000673
so part of: MJ_RS09230
location: complement(5456..5863)
location: region:5456-5863:-1
so has part: feature:5456-5863:-1:exon

WP_010890097.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5456-5863:-1:exon

MJ_RS09235
type: Gene
subclass of: SO_0000704
RO_0002162: 243232
locus tag: MJ_RS09235
old locus tag: MJ_ECS05
old locus tag: MJECS05
so part of: sequence
location: 6452..6817
location: region:6452-6817:1
so has part: feature:6452-6817:1:exon
subclass of: SO_0000010

1450832
type: Gene
SIO_000068: ncbigene

position:6452:1
position: 6452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6817:1
position: 6817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6452-6817:1:exon

MJ_RS09235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 243232
locus tag: MJ_RS09235
old locus tag: MJ_ECS05
old locus tag: MJECS05
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890098.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLTFLTVGIGAIFTPQTYPIMPTIGFIVVAGIVSLIGMTIGALIIHQQYETLPANEKLEFKQKLLPEAYYICIELFGYGSLVLLYNTFTSNNPTLCVMSLLMAGLFILVVLVIWYFGYKSY
SIO_010081: MJ_RS09235
subclass of: SO_0000673
so part of: MJ_RS09235
location: 6452..6817
location: region:6452-6817:1
so has part: feature:6452-6817:1:exon

WP_244409579.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6452-6817:1:exon

MJ_RS09895
type: Gene
subclass of: SO_0000704
RO_0002162: 243232
locus tag: MJ_RS09895
so part of: sequence
location: complement(6823..6948)
location: region:6823-6948:-1
so has part: feature:6823-6948:-1:exon
subclass of: SO_0000010

80265065
type: Gene
SIO_000068: ncbigene

position:6823:-1
position: 6823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6948:-1
position: 6948
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6823-6948:-1:exon

MJ_RS09895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 243232
locus tag: MJ_RS09895
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEDANLWIFFTAMLMYGLLIIAFAVLNYWLFKKPVKDASKE
SIO_010081: MJ_RS09895
subclass of: SO_0000673
so part of: MJ_RS09895
location: complement(6823..6948)
location: region:6823-6948:-1
so has part: feature:6823-6948:-1:exon

WP_280109661.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6823-6948:-1:exon

MJ_RS09240
type: Gene
subclass of: SO_0000704
RO_0002162: 243232
locus tag: MJ_RS09240
old locus tag: MJ_ECS06
old locus tag: MJECS06
so part of: sequence
location: complement(7006..7428)
location: region:7006-7428:-1
so has part: feature:7006-7428:-1:exon
subclass of: SO_0000010

1450833
type: Gene
SIO_000068: ncbigene

position:7006:-1
position: 7006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7428:-1
position: 7428
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7006-7428:-1:exon

MJ_RS09240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 243232
locus tag: MJ_RS09240
old locus tag: MJ_ECS06
old locus tag: MJECS06
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890099.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNIDDYIEKLEIQKEGFFYKCPYCNYTNADVKAIKKHIKSKHYDIIAKEVENLNKQNKPQRKPMKKQPKKKDDDYKDYMLLFAHKKKCKIYLDNGMIVEGTVKAKDRFNIMVLDAKVDDKEVERIIIQKGHIVALIPLEE
SIO_010081: MJ_RS09240
subclass of: SO_0000673
so part of: MJ_RS09240
location: complement(7006..7428)
location: region:7006-7428:-1
so has part: feature:7006-7428:-1:exon

WP_010890099.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7006-7428:-1:exon

MJ_RS09245
type: Gene
subclass of: SO_0000704
RO_0002162: 243232
locus tag: MJ_RS09245
old locus tag: MJ_ECS07
old locus tag: MJECS07
so part of: sequence
location: complement(7425..8723)
location: region:7425-8723:-1
so has part: feature:7425-8723:-1:exon
subclass of: SO_0000010

1450834
type: Gene
SIO_000068: ncbigene

position:7425:-1
position: 7425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8723:-1
position: 8723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7425-8723:-1:exon

MJ_RS09245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 243232
locus tag: MJ_RS09245
old locus tag: MJ_ECS07
old locus tag: MJECS07
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890100.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDRLTYYKLTSRYLYYFCLDRLLSCHRLDLDRDRKINWRHPKYWNYNNIPKGEKPYLRHIDLWDYRGNFKDWIIENLRSIYCSPYYFESPRYELEYPAIDYNYWDWVIDIDFKGNFKKSKEIAKEVREIFKDYGVKDIHIKFSGSKGFHIWINARYLPNEILNKGYVEGSTILTNFLNFKLRKLLDFVGKEGDTGIDLSIYKENMTVTAPFSLYYADIEGKTPISIPFPINKVEKFKPIYLQNVKPYFIRKLTKYYENFGEIRGDLTDFVDDALRYYQATKKVNNDIKIDLEINTNKKAKPKVEHSKREYIKTTIGDKEVVLNKVKLESYLNELINSNWEDGKMRGCYYLTSLCKLLGYGRDKTIKLLNRWASKYGNKYIKHIDYEVRYLYDRNGKVCSIKWLKENIPEAKTQIEIYKKYYELDKNNYLVKK
SIO_010081: MJ_RS09245
subclass of: SO_0000673
so part of: MJ_RS09245
location: complement(7425..8723)
location: region:7425-8723:-1
so has part: feature:7425-8723:-1:exon

WP_244409581.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7425-8723:-1:exon

MJ_RS09250
type: Gene
subclass of: SO_0000704
RO_0002162: 243232
locus tag: MJ_RS09250
old locus tag: MJ_ECS08
old locus tag: MJECS08
so part of: sequence
location: complement(8735..11929)
location: region:8735-11929:-1
so has part: feature:8735-11929:-1:exon
subclass of: SO_0000010

1450835
type: Gene
SIO_000068: ncbigene

position:8735:-1
position: 8735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11929:-1
position: 11929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8735-11929:-1:exon

MJ_RS09250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 243232
locus tag: MJ_RS09250
old locus tag: MJ_ECS08
old locus tag: MJECS08
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890101.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: winged helix-turn-helix transcriptional regulator
translation: MDKYVNGSINNIQNNNVLEYTINEINQYPEDVLEVAIKLLNIRYDPNTIKELDEHNKNNTEILGNIWLFSLNKLPLKERQLLLKYGLWELGAELPTDKLYRLEDAITSILGWSFWEIHDPKEVVLKLVKAGEMLHQQNRDIKIGEIVGEEFTALHQQNNDFTMLHQCGEEFTALHQQNNDFTMLHQLLHNIQDNSMIEDLCNKIGERANTLKKSYKNDDCKKTAKIFTILTFEGMRFDEFMNKAIEQLKIGEGTLKQHLKIYKQLEWIDIRKNPEDYDRKYIYLTYKFYEDIKDILDEYLPKKAFQEAEAKSEFMEDLKKSLKKFIEERLTPEGFEFDINEVDRLKGKERIVGAYFRSLLLNEPYEAIEMIYKVYYEKYFQFKPLEINIIGLETLRSRTIMTKAKDWGEFRNKLCVFRGDIAGIIHHRKSRPILRRYVCIDLDKNGNNKGCNCEVIRLYEPVENSQDYKIKCPECGRDIKYSESLFKDEDGEPIKLERDLTIAIIQLKETDEVYRVYLPYTPEINNLRDVEIVGILKTNHKGEYYIEGLSINPQKTINFNYDAFVRKVKNAGYSNALDYIKDRVFYEVKAILDKEGKNPTIDTLITLEILASSHIYWDKNRDGHLKPETIDCLFIGSYGQGKSLTIEPLAKLHNTTEDMIRVDMPNIENLIGLVISRDNIKFYKKGIIPMNHNRPIFIEEMMDFILRVGNDLDLLKSGKTSGIWKREREGYNIPMIGVSPWIGVGNIKDIDLMELWEIYHLKGFEEFKEAMINYFAKKLLKQHDYDRNEAEDRAKKIVNNILGANPQLNASEWLLSKILDFTLKNLRGMTDRIPLIYLLKPYTNEDWKEIKLHTYKVKRLREDNNFIKQKNLEAYECALFISYIKNKDIEFKEDALKTLWEVEEKLRDLLRDYGLFKGYSDRLFNQIEYMAKAYAKLKFKEYVDLEDVRDALKIWFKTILGVLLRIKAPDKVKEIFKLVGEEIKETQQKDEELEEINKLIEESRKLSQLKREILNYMLQNPKIYTTVEIAENFNISEDTARGILKELWKNGDVDNPESDQWRPL
SIO_010081: MJ_RS09250
subclass of: SO_0000673
so part of: MJ_RS09250
location: complement(8735..11929)
location: region:8735-11929:-1
so has part: feature:8735-11929:-1:exon

WP_010890101.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8735-11929:-1:exon

MJ_RS09255
type: Gene
subclass of: SO_0000704
RO_0002162: 243232
locus tag: MJ_RS09255
old locus tag: MJ_ECS09
old locus tag: MJECS09
so part of: sequence
location: complement(11922..12491)
location: region:11922-12491:-1
so has part: feature:11922-12491:-1:exon
subclass of: SO_0000010

1450836
type: Gene
SIO_000068: ncbigene

position:11922:-1
position: 11922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12491:-1
position: 12491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11922-12491:-1:exon

MJ_RS09255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 243232
locus tag: MJ_RS09255
old locus tag: MJ_ECS09
old locus tag: MJECS09
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MCVINNYIYFLIIIDLEYLVKWIKCYSDNVLKGTIKLLTNYYSKLYYIKLSLSHWLFSLCNLPLEDEMLFLSCGSLVKYQDASTHKLYKLEYLTKLILGYNRINVDNCICSIKVFAISTFERFLYHEFENNAFKLIMLHKRTSFNVYKVKTSKIALLNILEKIGRTYKRYLHTLKTPKNLTTTEVVRHG
SIO_010081: MJ_RS09255
subclass of: SO_0000673
so part of: MJ_RS09255
location: complement(11922..12491)
location: region:11922-12491:-1
so has part: feature:11922-12491:-1:exon

WP_244409572.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11922-12491:-1:exon

MJ_RS09260
type: Gene
subclass of: SO_0000704
RO_0002162: 243232
locus tag: MJ_RS09260
old locus tag: MJ_ECS10
old locus tag: MJECS10
so part of: sequence
location: complement(13178..14014)
location: region:13178-14014:-1
so has part: feature:13178-14014:-1:exon
subclass of: SO_0000010

1450837
type: Gene
SIO_000068: ncbigene

position:13178:-1
position: 13178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14014:-1
position: 14014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13178-14014:-1:exon

MJ_RS09260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 243232
locus tag: MJ_RS09260
old locus tag: MJ_ECS10
old locus tag: MJECS10
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890103.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPDEIICNFYVNISYLEISATYDSKNKRYSLSSKTGNFNVGVKGFEKLLSIFEKIGHVMKINEKTYKIIIQNKILNLKHLYSKKNKTHTLEILDEYNNLMKLSGKKLIDVALQLFKTFKINENIENSLNVKKTENDIQIINNNQNLKIEENINDSKTKENDNKCYREIIDRVLKSRSEQLFIENLENIPPKSVIYSITGAFSFIFGLGVLCETLESGKIRWKAIILGFIILILILAIVNYLMMKEKNVDEHEYNIPTKLMEDVYTTDCENFPCGYFPK
SIO_010081: MJ_RS09260
subclass of: SO_0000673
so part of: MJ_RS09260
location: complement(13178..14014)
location: region:13178-14014:-1
so has part: feature:13178-14014:-1:exon

WP_244409575.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13178-14014:-1:exon

MJ_RS09265
type: Gene
subclass of: SO_0000704
RO_0002162: 243232
locus tag: MJ_RS09265
old locus tag: MJ_ECS11
old locus tag: MJECS11
so part of: sequence
location: 14527..15033
location: region:14527-15033:1
so has part: feature:14527-15033:1:exon
subclass of: SO_0000010

1450838
type: Gene
SIO_000068: ncbigene

position:14527:1
position: 14527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15033:1
position: 15033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14527-15033:1:exon

MJ_RS09265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 243232
locus tag: MJ_RS09265
old locus tag: MJ_ECS11
old locus tag: MJECS11
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890104.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YfbU family protein
translation: MLSKIERLILANQYKILKILENTSEYDEIIKILEEGYEIFYDEILGHIFDELPESEGQFVLDILSFYDIVVEPYKQKNPNDHEIINHPYSYFKGFDGNSETKYMAFVRFLIEDQKKFSFVAKYAKKTDNFNSHFPMLDKYRKMVELWESKYNKKYDLKREEILDILNA
SIO_010081: MJ_RS09265
subclass of: SO_0000673
so part of: MJ_RS09265
location: 14527..15033
location: region:14527-15033:1
so has part: feature:14527-15033:1:exon

WP_010890104.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14527-15033:1:exon