Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 plasmid pCP1, complete sequence.
Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Bacteria; Deinococcota; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.
Landscape of structural changes in the genome of Deinococcus radiodurans recA mutants
Submitted (02-APR-2019) Division of Molecular Biology, Ruder Boskovic Institute, Bijenicka cesta 54, Zagreb 10000, Croatia
REFSEQ INFORMATION: The reference sequence is identical to\nCP038666.1.\nBacteria and source DNA available from Molecular Microbiology\nLaboratory, Ruder Boskovic Institute.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2016\nAssembly Method :: Canu v. 2016\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 373.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/09/2023 03:06:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,202\nCDSs (total) :: 3,140\nGenes (coding) :: 3,112\nCDSs (with protein) :: 3,112\nGenes (RNA) :: 62\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 28\nCDSs (without protein) :: 28\nPseudo Genes (ambiguous residues) :: 0 of 28\nPseudo Genes (frameshifted) :: 7 of 28\nPseudo Genes (incomplete) :: 19 of 28\nPseudo Genes (internal stop) :: 2 of 28\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012609.2
GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013491.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
PEP/pyruvate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076612364.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS630-like element ISDra3 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_017870637.1
COORDINATES: protein motif:HMM:NF013213.2
COORDINATES: similar to AA sequence:RefSeq:WP_010884100.1
COORDINATES: protein motif:HMM:NF021064.2
COORDINATES: similar to AA sequence:RefSeq:WP_010886790.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011525782.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: protein motif:HMM:NF013670.2
COORDINATES: protein motif:HMM:NF021507.2
phosphodiester glycosidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017871622.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010884084.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010851.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010884117.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611852.1
IS66-like element ISDra8 family transposase
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010884088.1
IS5-like element ISDra5 family transposase
COORDINATES: protein motif:HMM:NF015983.2
COORDINATES: protein motif:HMM:NF014589.2
COORDINATES: protein motif:HMM:NF039907.1
COORDINATES: protein motif:HMM:NF017760.2