Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 chromosome II, complete sequence.
Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Bacteria; Deinococcota; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.
Landscape of structural changes in the genome of Deinococcus radiodurans recA mutants
Submitted (02-APR-2019) Division of Molecular Biology, Ruder Boskovic Institute, Bijenicka cesta 54, Zagreb 10000, Croatia
REFSEQ INFORMATION: The reference sequence is identical to\nCP038664.1.\nBacteria and source DNA available from Molecular Microbiology\nLaboratory, Ruder Boskovic Institute.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2016\nAssembly Method :: Canu v. 2016\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 373.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/09/2023 03:06:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,202\nCDSs (total) :: 3,140\nGenes (coding) :: 3,112\nCDSs (with protein) :: 3,112\nGenes (RNA) :: 62\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 28\nCDSs (without protein) :: 28\nPseudo Genes (ambiguous residues) :: 0 of 28\nPseudo Genes (frameshifted) :: 7 of 28\nPseudo Genes (incomplete) :: 19 of 28\nPseudo Genes (internal stop) :: 2 of 28\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_019011418.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017869438.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889262.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_017869440.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_014686133.1
NTP transferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017869441.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623095.1
COORDINATES: similar to AA sequence:RefSeq:WP_013556212.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587155.1
COORDINATES: protein motif:HMM:NF019350.2
COORDINATES: similar to AA sequence:RefSeq:WP_000619270.1
COORDINATES: similar to AA sequence:RefSeq:WP_011531250.1
GO:0004851 - uroporphyrin-III C-methyltransferase activity [Evidence IEA]
GO:0019354 - siroheme biosynthetic process [Evidence IEA]
uroporphyrinogen-III C-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012694271.1
GO:0016829 - lyase activity [Evidence IEA]
CbiX/SirB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014685122.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889274.1
GO:0004020 - adenylylsulfate kinase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012693458.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0004604 - phosphoadenylyl-sulfate reductase (thioredoxin) activity [Evidence IEA]
GO:0019379 - sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010889276.1
GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017869443.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889278.1
bifunctional metallophosphatase/5'-nucleotidase
COORDINATES: similar to AA sequence:RefSeq:WP_019586542.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869446.1
GO:0043752 - adenosylcobinamide kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_019587228.1
COORDINATES: protein motif:HMM:NF021127.2
COORDINATES: similar to AA sequence:RefSeq:WP_019010476.1
COORDINATES: similar to AA sequence:RefSeq:WP_015236970.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870816.1
COORDINATES: protein motif:HMM:NF025461.2
COORDINATES: similar to AA sequence:RefSeq:WP_017870814.1
acetyl ornithine aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017870813.1
L-glutamate gamma-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_017869785.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
glucose-1-phosphate thymidylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_015231422.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869783.1
tyrosine-protein kinase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019587352.1
COORDINATES: protein motif:HMM:NF014051.2
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: similar to AA sequence:RefSeq:WP_019588417.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012694167.1
glucose-1-phosphate thymidylyltransferase RfbA
COORDINATES: similar to AA sequence:RefSeq:WP_012694166.1
dTDP-4-dehydrorhamnose 3,5-epimerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019008843.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587345.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695644.1
phosphoglucomutase/phosphomannomutase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011529468.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695248.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889310.1
COORDINATES: protein motif:HMM:NF013306.2
COORDINATES: similar to AA sequence:RefSeq:WP_017869778.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869777.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011530208.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_017869241.1
COORDINATES: protein motif:HMM:NF014404.2
COORDINATES: similar to AA sequence:RefSeq:WP_017869240.1
COORDINATES: similar to AA sequence:RefSeq:WP_014685033.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869775.1
COORDINATES: similar to AA sequence:RefSeq:WP_019585711.1
COORDINATES: similar to AA sequence:RefSeq:WP_013614030.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014684392.1
COORDINATES: similar to AA sequence:RefSeq:WP_012692780.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017869773.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525943.1
GO:0008448 - N-acetylglucosamine-6-phosphate deacetylase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]
N-acetylglucosamine-6-phosphate deacetylase
COORDINATES: similar to AA sequence:RefSeq:WP_012693562.1
COORDINATES: similar to AA sequence:RefSeq:WP_011529950.1
COORDINATES: similar to AA sequence:RefSeq:WP_011529306.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013615900.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_014682913.1
COORDINATES: similar to AA sequence:RefSeq:WP_013615895.1
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: protein motif:HMM:NF012870.2
GO:0015074 - DNA integration [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: protein motif:HMM:NF024793.2
COORDINATES: protein motif:HMM:NF024248.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF015211.2
COORDINATES: protein motif:HMM:TIGR01641.1
GO:0044423 - virion component [Evidence IEA]
GO:0016032 - viral process [Evidence IEA]; GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014685309.1
COORDINATES: similar to AA sequence:RefSeq:WP_014685310.1
COORDINATES: protein motif:HMM:NF021648.2
COORDINATES: protein motif:HMM:NF024627.2
right-handed parallel beta-helix repeat-containing protein
class I SAM-dependent DNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_017869754.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_017869753.1
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_010889382.1
GO:0018817 - 2-oxo-hept-3-ene-1,7-dioate hydratase activity [Evidence IEA]
2-oxo-hepta-3-ene-1,7-dioic acid hydratase
COORDINATES: similar to AA sequence:RefSeq:WP_011526015.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869751.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869750.1
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017869769.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869768.1
COORDINATES: protein motif:HMM:NF037627.2
COORDINATES: protein motif:HMM:NF024869.2
COORDINATES: similar to AA sequence:RefSeq:WP_014695576.1
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017871724.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695578.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015236708.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013615724.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871932.1
COORDINATES: similar to AA sequence:RefSeq:WP_013615722.1
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_017871930.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011408.1
COORDINATES: protein motif:HMM:NF014906.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013615067.1
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017871997.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871478.1
GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]
GO:0006548 - histidine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010889408.1
GO:0050480 - imidazolonepropionase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017871476.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010889411.1
GO:0016153 - urocanate hydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019586639.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586220.1
COORDINATES: similar to AA sequence:RefSeq:WP_013622960.1
COORDINATES: similar to AA sequence:RefSeq:WP_014682732.1
COORDINATES: similar to AA sequence:RefSeq:WP_015234918.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011529792.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]; GO:0042301 - phosphate ion binding [Evidence IEA]
phosphate ABC transporter substrate-binding protein PstS
COORDINATES: similar to AA sequence:RefSeq:WP_017871467.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter permease subunit PstC
COORDINATES: similar to AA sequence:RefSeq:WP_019010146.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871465.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter ATP-binding protein PstB
COORDINATES: similar to AA sequence:RefSeq:WP_010889421.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0051049 - regulation of transport [Evidence IEA]
phosphate signaling complex protein PhoU
COORDINATES: similar to AA sequence:RefSeq:WP_017871462.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871461.1
COORDINATES: protein motif:HMM:NF008229.0
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
GO:0006662 - glycerol ether metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF039515.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889427.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871762.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017871761.1
GO:0015412 - ABC-type molybdate transporter activity [Evidence IEA]; GO:0030973 - molybdate ion binding [Evidence IEA]
GO:0015689 - molybdate ion transport [Evidence IEA]
molybdate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017871760.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871759.1
GO:0008902 - hydroxymethylpyrimidine kinase activity [Evidence IEA]; GO:0008972 - phosphomethylpyrimidine kinase activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_013557354.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871757.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017871756.1
GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010889435.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_011525967.1
nucleobase:cation symporter-2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019008367.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011525962.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]; GO:0004854 - xanthine dehydrogenase activity [Evidence IEA]
GO:0009115 - xanthine catabolic process [Evidence IEA]
xanthine dehydrogenase molybdopterin binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019587844.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]
GO:0065003 - protein-containing complex assembly [Evidence IEA]; GO:0009115 - xanthine catabolic process [Evidence IEA]
xanthine dehydrogenase accessory protein XdhC
COORDINATES: similar to AA sequence:RefSeq:WP_010889440.1
GO:0008892 - guanine deaminase activity [Evidence IEA]
GO:0006147 - guanine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017870897.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017871749.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587850.1
COORDINATES: similar to AA sequence:RefSeq:WP_012692116.1
GO:0008478 - pyridoxal kinase activity [Evidence IEA]
GO:0009443 - pyridoxal 5'-phosphate salvage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017871991.1
COORDINATES: similar to AA sequence:RefSeq:WP_012692087.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871401.1
GO:0009380 - excinuclease repair complex [Evidence IEA]
GO:0009381 - excinuclease ABC activity [Evidence IEA]
GO:0006289 - nucleotide-excision repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019587309.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0008172 - S-methyltransferase activity [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
GO:0018339 - peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid [Evidence IEA]
30S ribosomal protein S12 methylthiotransferase RimO
COORDINATES: similar to AA sequence:RefSeq:WP_017871736.1
COORDINATES: similar to AA sequence:RefSeq:WP_011526046.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871415.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586159.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_017871413.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017871412.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586166.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871410.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586169.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889460.1
GO:0004359 - glutaminase activity [Evidence IEA]; GO:0003952 - NAD+ synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO:0008795 - NAD+ synthase activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017871407.1
GO:0006801 - superoxide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017871406.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871405.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871404.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871403.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871733.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871732.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871731.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871730.1
COORDINATES: similar to AA sequence:RefSeq:WP_011526053.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695159.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889472.1
GO:0016835 - carbon-oxygen lyase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009254 - peptidoglycan turnover [Evidence IEA]
N-acetylmuramic acid 6-phosphate etherase
COORDINATES: similar to AA sequence:RefSeq:WP_011531000.1
GO:0003955 - NAD(P)H dehydrogenase (quinone) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019585276.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871726.1
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019586241.1
COORDINATES: protein motif:HMM:NF012371.2
COORDINATES: similar to AA sequence:RefSeq:WP_017869510.1
GO:0018480 - 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase activity [Evidence IEA]
GO:1901023 - 4-hydroxyphenylacetate catabolic process [Evidence IEA]
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_017869509.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623239.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869506.1
4-hydroxyphenylacetate 3-monooxygenase, oxygenase component
COORDINATES: similar to AA sequence:RefSeq:WP_017869505.1
GO:0008687 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase activity [Evidence IEA]
3,4-dihydroxyphenylacetate 2,3-dioxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_017869504.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623235.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017869502.1
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_013623001.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869500.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869499.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869498.1
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010889491.1
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_017869496.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012695235.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869495.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869494.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869493.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869492.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889498.1
adenosylcobinamide-GDP ribazoletransferase
COORDINATES: similar to AA sequence:RefSeq:WP_010889499.1
GO:0008939 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity [Evidence IEA]
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_017869488.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869487.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889502.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0008941 - nitric oxide dioxygenase activity [Evidence IEA]; GO:0019825 - oxygen binding [Evidence IEA]
GO:0051409 - response to nitrosative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017869485.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010887933.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869483.1
COORDINATES: similar to AA sequence:RefSeq:WP_013622981.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF013613.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0007155 - cell adhesion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
leishmanolysin-related zinc metalloendopeptidase
COORDINATES: similar to AA sequence:RefSeq:WP_017869481.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525650.1
NADPH:quinone oxidoreductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017869479.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611356.1
IS4-like element ISDra7 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_010889514.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869477.1
GO:0047475 - phenylacetate-CoA ligase activity [Evidence IEA]
GO:0010124 - phenylacetate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017869476.1
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017869475.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869474.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019586258.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869472.1
branched-chain amino acid ABC transporter ATP-binding protein/permease
COORDINATES: similar to AA sequence:RefSeq:WP_019586256.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_014695600.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889523.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869467.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869466.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869465.1
COORDINATES: similar to AA sequence:RefSeq:WP_012692369.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869464.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869463.1
GO:0004516 - nicotinate phosphoribosyltransferase activity [Evidence IEA]
GO:0019357 - nicotinate nucleotide biosynthetic process [Evidence IEA]; GO:0019358 - nicotinate nucleotide salvage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017869462.1
bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase
COORDINATES: similar to AA sequence:RefSeq:WP_017869461.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869460.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586412.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869458.1
GO:0004474 - malate synthase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013615485.1
COORDINATES: similar to AA sequence:RefSeq:WP_013615484.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586499.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586498.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871875.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871876.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869455.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869454.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869453.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017869452.1
GO:0018802 - 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019323.2
COORDINATES: similar to AA sequence:RefSeq:WP_017871874.1
COORDINATES: protein motif:HMM:NF017262.2
COORDINATES: similar to AA sequence:RefSeq:WP_011530264.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013614702.1
COORDINATES: similar to AA sequence:RefSeq:WP_013614701.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870737.1
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: protein motif:HMM:NF004822.0
COORDINATES: protein motif:HMM:NF013225.2
carboxyl transferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010889570.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889571.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016530 - metallochaperone activity [Evidence IEA]
GO:0019627 - urea metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014684165.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889573.1
COORDINATES: similar to AA sequence:RefSeq:WP_014684167.1
GO:0016530 - metallochaperone activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
hydrogenase nickel incorporation protein HypB
COORDINATES: similar to AA sequence:RefSeq:WP_010889575.1
hydrogenase maturation nickel metallochaperone HypA
COORDINATES: protein motif:HMM:NF016819.2
COORDINATES: similar to AA sequence:RefSeq:WP_010889577.1
GO:0016151 - nickel cation binding [Evidence IEA]; GO:0009039 - urease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF009671.0
GO:0035550 - urease complex [Evidence IEA]
GO:0043419 - urea catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019011441.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0033221 - ATPase-coupled urea transmembrane transporter activity [Evidence IEA]; GO:0033219 - urea binding [Evidence IEA]
GO:0015840 - urea transport [Evidence IEA]
urea ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019011442.1
GO:0033221 - ATPase-coupled urea transmembrane transporter activity [Evidence IEA]
urea ABC transporter permease subunit UrtB
COORDINATES: similar to AA sequence:RefSeq:WP_019011443.1
urea ABC transporter permease subunit UrtC
COORDINATES: similar to AA sequence:RefSeq:WP_019011444.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0033221 - ATPase-coupled urea transmembrane transporter activity [Evidence IEA]
urea ABC transporter ATP-binding protein UrtD
COORDINATES: similar to AA sequence:RefSeq:WP_019011445.1
urea ABC transporter ATP-binding subunit UrtE
COORDINATES: protein motif:HMM:NF020678.2
COORDINATES: similar to AA sequence:RefSeq:WP_012694324.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008852.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623006.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008847.1
COORDINATES: protein motif:HMM:NF024491.2
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017870826.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870825.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870824.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017870823.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870822.1
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_017870821.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870820.1
GO:0030429 - kynureninase activity [Evidence IEA]
GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012695283.1
GO:0004833 - tryptophan 2,3-dioxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017870818.1
COORDINATES: protein motif:HMM:NF012311.2
COORDINATES: protein motif:HMM:NF024816.2
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889602.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870827.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0006282 - regulation of DNA repair [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019587270.1
GO:0046677 - response to antibiotic [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010889605.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870829.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889607.1
COORDINATES: similar to AA sequence:RefSeq:WP_019009890.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870834.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870835.1
COORDINATES: protein motif:HMM:NF012245.2
COORDINATES: similar to AA sequence:RefSeq:WP_013623123.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013623125.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017871802.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871801.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871800.1
COORDINATES: similar to AA sequence:RefSeq:WP_014685746.1
COORDINATES: similar to AA sequence:RefSeq:WP_013615135.1
GO:0004795 - threonine synthase activity [Evidence IEA]
GO:0009088 - threonine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013694.2
magnesium transporter CorA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013555946.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889622.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695369.1
COORDINATES: similar to AA sequence:RefSeq:WP_017872006.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019008467.1
GO:0008767 - UDP-galactopyranose mutase activity [Evidence IEA]
GO:0009273 - peptidoglycan-based cell wall biogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013623086.1