Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
Genome sequence of Rhizobium daejeonense KACC 13094
Submitted (09-JAN-2020) Agriculture & Life Science, Kyungpook National University, Daehak-ro 80, Daegu 41566, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP048425.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2020-01-09\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 114.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/06/2023 01:57:08\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,885\nCDSs (total) :: 4,813\nGenes (coding) :: 4,745\nCDSs (with protein) :: 4,745\nGenes (RNA) :: 72\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 4\nPseudo Genes (total) :: 68\nCDSs (without protein) :: 68\nPseudo Genes (ambiguous residues) :: 0 of 68\nPseudo Genes (frameshifted) :: 34 of 68\nPseudo Genes (incomplete) :: 48 of 68\nPseudo Genes (internal stop) :: 15 of 68\nPseudo Genes (multiple problems) :: 24 of 68\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_017265750.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020042528.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007798846.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014069606.1
COORDINATES: similar to AA sequence:RefSeq:WP_012564486.1
GO:0008838 - diaminopropionate ammonia-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013539.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005862140.1
COORDINATES: similar to AA sequence:RefSeq:WP_005862142.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005862144.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014321981.1
COORDINATES: similar to AA sequence:RefSeq:WP_018390024.1
GO:0004157 - dihydropyrimidinase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018325682.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011983018.1
GO:0051304 - chromosome separation [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612142.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012590993.1
TetR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008493915.1
COORDINATES: similar to AA sequence:RefSeq:WP_018115051.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012554594.1
COORDINATES: similar to AA sequence:RefSeq:WP_011631861.1
COORDINATES: similar to AA sequence:RefSeq:WP_010348304.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654541.1
COORDINATES: similar to AA sequence:RefSeq:WP_003590941.1
GSU2403 family nucleotidyltransferase fold protein
COORDINATES: similar to AA sequence:RefSeq:WP_018006004.1
COORDINATES: similar to AA sequence:RefSeq:WP_013892804.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010217771.1
COORDINATES: similar to AA sequence:RefSeq:WP_008960648.1
COORDINATES: protein motif:HMM:NF018984.2
CGNR zinc finger domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017778251.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015341702.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341703.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_014197550.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione S-transferase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013698761.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018899351.1
COORDINATES: protein motif:HMM:NF015608.2
COORDINATES: similar to AA sequence:RefSeq:WP_003549375.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549373.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992360.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992365.1
COORDINATES: similar to AA sequence:RefSeq:WP_018069720.1
COORDINATES: similar to AA sequence:RefSeq:WP_008194750.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018096017.1
COORDINATES: similar to AA sequence:RefSeq:WP_003526077.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003515192.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003515217.1
COORDINATES: similar to AA sequence:RefSeq:WP_020009010.1
COORDINATES: similar to AA sequence:RefSeq:WP_003523942.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010973691.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003510192.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010974519.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974518.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974517.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974516.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974515.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008117052.1
COORDINATES: similar to AA sequence:RefSeq:WP_007434549.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974520.1
COORDINATES: similar to AA sequence:RefSeq:WP_012640836.1
tannase/feruloyl esterase family alpha/beta hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_009820057.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011970376.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_003510063.1
COORDINATES: similar to AA sequence:RefSeq:WP_012650505.1
COORDINATES: similar to AA sequence:RefSeq:WP_003517424.1
COORDINATES: similar to AA sequence:RefSeq:WP_003517406.1
COORDINATES: similar to AA sequence:RefSeq:WP_007015588.1
COORDINATES: similar to AA sequence:RefSeq:WP_012648960.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007710900.1
COORDINATES: similar to AA sequence:RefSeq:WP_012228108.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018485258.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611656.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: protein motif:HMM:NF016648.2
GO:0016989 - sigma factor antagonist activity [Evidence IEA]; GO:0004888 - transmembrane signaling receptor activity [Evidence IEA]
GO:0006811 - monoatomic ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014748594.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013648.2
COORDINATES: similar to AA sequence:RefSeq:WP_014748592.1
Fe(3+)-hydroxamate ABC transporter permease FhuB
COORDINATES: similar to AA sequence:RefSeq:WP_006939175.1
COORDINATES: protein motif:HMM:TIGR01414.1
autotransporter domain-containing protein
COORDINATES: protein motif:HMM:NF019316.2
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018493178.1
COORDINATES: similar to AA sequence:RefSeq:WP_003245309.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188566.1
COORDINATES: protein motif:HMM:NF037026.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025878.2
COORDINATES: protein motif:HMM:NF012264.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024834.2
COORDINATES: similar to AA sequence:RefSeq:WP_015436522.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013699807.1
COORDINATES: similar to AA sequence:RefSeq:WP_012536907.1
COORDINATES: protein motif:HMM:NF024950.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF020893.2
COORDINATES: similar to AA sequence:RefSeq:WP_010658625.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:1905887 - autoinducer AI-2 transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014764550.1
COORDINATES: similar to AA sequence:RefSeq:WP_007818973.1
nitrate reductase cytochrome c-type subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010967653.1
GO:0009325 - nitrate reductase complex [Evidence IEA]
GO:0008940 - nitrate reductase activity [Evidence IEA]
GO:0042126 - nitrate metabolic process [Evidence IEA]
periplasmic nitrate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_007818976.1
COORDINATES: protein motif:HMM:NF024247.2
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007818980.1
periplasmic nitrate reductase, NapE protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611469.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013584.2
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019862822.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF013697.2
COORDINATES: protein motif:HMM:NF013353.2
GO:0036361 - racemase activity, acting on amino acids and derivatives [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
aspartate/glutamate racemase family protein
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_007681550.1
COORDINATES: similar to AA sequence:RefSeq:WP_015922797.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611992.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_007635327.1
COORDINATES: similar to AA sequence:RefSeq:WP_018242080.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019566737.1
COORDINATES: similar to AA sequence:RefSeq:WP_012339451.1
COORDINATES: similar to AA sequence:RefSeq:WP_006385421.1
COORDINATES: similar to AA sequence:RefSeq:WP_006385422.1
COORDINATES: similar to AA sequence:RefSeq:WP_011546982.1
COORDINATES: similar to AA sequence:RefSeq:WP_017800803.1
GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018063457.1
COORDINATES: similar to AA sequence:RefSeq:WP_019172897.1
COORDINATES: similar to AA sequence:RefSeq:WP_006329739.1
BMP family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020476054.1
COORDINATES: similar to AA sequence:RefSeq:WP_003814358.1
COORDINATES: similar to AA sequence:RefSeq:WP_013529872.1
alanine--glyoxylate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020290275.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003820902.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012248571.1
N-acyl homoserine lactonase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003820906.1
COORDINATES: similar to AA sequence:RefSeq:WP_007758986.1
4-hydroxyphenylacetate 3-hydroxylase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF019013.2
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017800809.1
COORDINATES: protein motif:HMM:NF013756.2
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017800813.1
COORDINATES: similar to AA sequence:RefSeq:WP_017800798.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006699854.1
COORDINATES: similar to AA sequence:RefSeq:WP_009175525.1
COORDINATES: similar to AA sequence:RefSeq:WP_009571033.1
GO:0005267 - potassium channel activity [Evidence IEA]
GO:0034220 - monoatomic ion transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003800405.1
COORDINATES: protein motif:HMM:NF008239.0
COORDINATES: protein motif:HMM:NF024748.2
COORDINATES: similar to AA sequence:RefSeq:WP_008973509.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014494877.1
COORDINATES: similar to AA sequence:RefSeq:WP_007610959.1
COORDINATES: similar to AA sequence:RefSeq:WP_014494879.1
COORDINATES: similar to AA sequence:RefSeq:WP_007610957.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006469618.1
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
succinylglutamate desuccinylase/aspartoacylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004850819.1
COORDINATES: similar to AA sequence:RefSeq:WP_012822885.1
COORDINATES: similar to AA sequence:RefSeq:WP_007631914.1
COORDINATES: similar to AA sequence:RefSeq:WP_018447051.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007631911.1
COORDINATES: similar to AA sequence:RefSeq:WP_011729016.1
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009573559.1
COORDINATES: similar to AA sequence:RefSeq:WP_015001765.1
COORDINATES: similar to AA sequence:RefSeq:WP_015684575.1
COORDINATES: similar to AA sequence:RefSeq:WP_004116603.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010975799.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018898014.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013850646.1
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018898012.1
COORDINATES: similar to AA sequence:RefSeq:WP_018898011.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_003499958.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008884986.1
COORDINATES: similar to AA sequence:RefSeq:WP_018860240.1
COORDINATES: similar to AA sequence:RefSeq:WP_018860239.1
COORDINATES: similar to AA sequence:RefSeq:WP_018860238.1
COORDINATES: similar to AA sequence:RefSeq:WP_006469628.1
COORDINATES: similar to AA sequence:RefSeq:WP_018860236.1
COORDINATES: similar to AA sequence:RefSeq:WP_018860235.1
COORDINATES: similar to AA sequence:RefSeq:WP_002729091.1
GO:0008836 - diaminopimelate decarboxylase activity [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018860233.1
COORDINATES: similar to AA sequence:RefSeq:WP_009571618.1
COORDINATES: similar to AA sequence:RefSeq:WP_018067525.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011976106.1
COORDINATES: similar to AA sequence:RefSeq:WP_015343189.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003521909.1
MSMEG_0572 family nitrogen starvation response protein
COORDINATES: similar to AA sequence:RefSeq:WP_003545448.1
GO:0000257 - nitrilase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011650436.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]; GO:0046500 - S-adenosylmethionine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017990254.1
GO:0016746 - acyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018486353.1
sll0787 family AIR synthase-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_018486352.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003545440.1
MSMEG_0570 family nitrogen starvation response protein
COORDINATES: similar to AA sequence:RefSeq:WP_007603202.1
MSMEG_0569 family flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007821612.1
COORDINATES: similar to AA sequence:RefSeq:WP_003510741.1
COORDINATES: similar to AA sequence:RefSeq:WP_003531422.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010969450.1
COORDINATES: similar to AA sequence:RefSeq:WP_010969451.1
GO:0047443 - 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity [Evidence IEA]
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_010969452.1
COORDINATES: similar to AA sequence:RefSeq:WP_003531415.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_003531414.1
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017263640.1
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010969456.1
COORDINATES: similar to AA sequence:RefSeq:WP_017276068.1
COORDINATES: similar to AA sequence:RefSeq:WP_017264273.1
COORDINATES: similar to AA sequence:RefSeq:WP_007880317.1
COORDINATES: similar to AA sequence:RefSeq:WP_006468832.1
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007880315.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011970056.1
COORDINATES: similar to AA sequence:RefSeq:WP_007880312.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538550.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551417.1
autoinducer binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006726961.1
GO:0006935 - chemotaxis [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
HAMP domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_015914799.1
COORDINATES: similar to AA sequence:RefSeq:WP_019860152.1
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_007374993.1
GO:0004133 - glycogen debranching enzyme activity [Evidence IEA]
GO:0005980 - glycogen catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018329916.1
COORDINATES: similar to AA sequence:RefSeq:WP_013850788.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_014527282.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496096.1
GO:0097367 - carbohydrate derivative binding [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018856029.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018209845.1
COORDINATES: similar to AA sequence:RefSeq:WP_011426606.1
COORDINATES: similar to AA sequence:RefSeq:WP_014763917.1
COORDINATES: similar to AA sequence:RefSeq:WP_003575363.1
COORDINATES: similar to AA sequence:RefSeq:WP_004207038.1
COORDINATES: similar to AA sequence:RefSeq:WP_013891366.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551705.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558376.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004432296.1
COORDINATES: similar to AA sequence:RefSeq:WP_018428765.1
COORDINATES: similar to AA sequence:RefSeq:WP_018390111.1
COORDINATES: similar to AA sequence:RefSeq:WP_012654568.1
COORDINATES: similar to AA sequence:RefSeq:WP_012654569.1
GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
cyclopropane-fatty-acyl-phospholipid synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018859305.1
COORDINATES: similar to AA sequence:RefSeq:WP_014131689.1
COORDINATES: similar to AA sequence:RefSeq:WP_007006767.1
COORDINATES: similar to AA sequence:RefSeq:WP_006469985.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012654574.1
COORDINATES: similar to AA sequence:RefSeq:WP_011158886.1
COORDINATES: similar to AA sequence:RefSeq:WP_017966696.1
COORDINATES: similar to AA sequence:RefSeq:WP_012759868.1
COORDINATES: similar to AA sequence:RefSeq:WP_014328678.1
COORDINATES: similar to AA sequence:RefSeq:WP_020009890.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003994 - aconitate hydratase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
COORDINATES: similar to AA sequence:RefSeq:WP_008068994.1
COORDINATES: similar to AA sequence:RefSeq:WP_010911301.1
COORDINATES: similar to AA sequence:RefSeq:WP_019860981.1
COORDINATES: similar to AA sequence:RefSeq:WP_008873050.1
COORDINATES: similar to AA sequence:RefSeq:WP_008873051.1
COORDINATES: similar to AA sequence:RefSeq:WP_015314932.1
COORDINATES: similar to AA sequence:RefSeq:WP_019171409.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
Derived by automated computational analysis using gene prediction method: cmsearch.
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: similar to AA sequence:RefSeq:WP_076611444.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020175794.1
GO:0009116 - nucleoside metabolic process [Evidence IEA]
phosphoribosyltransferase family protein
COORDINATES: protein motif:HMM:NF020811.2
COORDINATES: similar to AA sequence:RefSeq:WP_007787899.1
YbhB/YbcL family Raf kinase inhibitor-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_012701149.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020087122.1
COORDINATES: protein motif:HMM:NF012257.2
COORDINATES: protein motif:HMM:TIGR01251.1
GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018407357.1
COORDINATES: protein motif:HMM:TIGR01843.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_015915219.1
COORDINATES: similar to AA sequence:RefSeq:WP_018388914.1
COORDINATES: protein motif:HMM:NF037144.2
COORDINATES: similar to AA sequence:RefSeq:WP_007532264.1
COORDINATES: similar to AA sequence:RefSeq:WP_013761690.1
COORDINATES: similar to AA sequence:RefSeq:WP_003506966.1
COORDINATES: similar to AA sequence:RefSeq:WP_020012038.1
COORDINATES: protein motif:HMM:NF018941.2
COORDINATES: similar to AA sequence:RefSeq:WP_020811315.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559808.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559809.1