Rhizobium daejeonense strain KACC 13094 plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
Genome sequence of Rhizobium daejeonense KACC 13094
Submitted (09-JAN-2020) Agriculture & Life Science, Kyungpook National University, Daehak-ro 80, Daegu 41566, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP048424.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2020-01-09\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 114.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/06/2023 01:57:08\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,885\nCDSs (total) :: 4,813\nGenes (coding) :: 4,745\nCDSs (with protein) :: 4,745\nGenes (RNA) :: 72\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 4\nPseudo Genes (total) :: 68\nCDSs (without protein) :: 68\nPseudo Genes (ambiguous residues) :: 0 of 68\nPseudo Genes (frameshifted) :: 34 of 68\nPseudo Genes (incomplete) :: 48 of 68\nPseudo Genes (internal stop) :: 15 of 68\nPseudo Genes (multiple problems) :: 24 of 68\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_006315604.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
BTAD domain-containing putative transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007600329.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654541.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_010974358.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611992.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394313.1
COORDINATES: similar to AA sequence:RefSeq:WP_019572591.1
COORDINATES: similar to AA sequence:RefSeq:WP_009638291.1
COORDINATES: protein motif:HMM:NF013088.2
GO:0005215 - transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024242.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007893050.1
GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009638289.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009638288.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007893054.1
COORDINATES: similar to AA sequence:RefSeq:WP_008108737.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008108753.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_006023052.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_019565065.1
COORDINATES: similar to AA sequence:RefSeq:WP_013376974.1
COORDINATES: similar to AA sequence:RefSeq:WP_017802682.1
COORDINATES: similar to AA sequence:RefSeq:WP_004946508.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002445025.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015378403.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_002115907.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612015.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003551598.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611812.1
COORDINATES: protein motif:HMM:NF015437.2
autoinducer binding domain-containing protein
COORDINATES: protein motif:HMM:NF012698.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015633362.1
COORDINATES: similar to AA sequence:RefSeq:WP_016957931.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018329017.1
COORDINATES: similar to AA sequence:RefSeq:WP_007536904.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018856397.1
COORDINATES: protein motif:HMM:NF024252.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010875417.1
COORDINATES: similar to AA sequence:RefSeq:WP_007536784.1
carbon-nitrogen hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018068589.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992759.1
GO:0051213 - dioxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018329006.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760261.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006724070.1
COORDINATES: similar to AA sequence:RefSeq:WP_006724071.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018116484.1
COORDINATES: similar to AA sequence:RefSeq:WP_003548532.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611975.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018484739.1
COORDINATES: similar to AA sequence:RefSeq:WP_003568376.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO:0017013 - protein flavinylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006643175.1
COORDINATES: similar to AA sequence:RefSeq:WP_006204531.1
COORDINATES: similar to AA sequence:RefSeq:WP_017988251.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484746.1
COORDINATES: similar to AA sequence:RefSeq:WP_018484747.1
COORDINATES: similar to AA sequence:RefSeq:WP_011651861.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555993.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538570.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015341949.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516731.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0008233 - peptidase activity [Evidence IEA]
conjugative transfer signal peptidase TraF
COORDINATES: similar to AA sequence:RefSeq:WP_020048127.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_007637593.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516734.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_018210396.1
Ti-type conjugative transfer system protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_018329045.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007538550.1
COORDINATES: similar to AA sequence:RefSeq:WP_003594536.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012477327.1
COORDINATES: similar to AA sequence:RefSeq:WP_017273099.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516741.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018482054.1
COORDINATES: similar to AA sequence:RefSeq:WP_003508788.1
COORDINATES: similar to AA sequence:RefSeq:WP_018326268.1
COORDINATES: similar to AA sequence:RefSeq:WP_003524938.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_003575317.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997409.1
COORDINATES: similar to AA sequence:RefSeq:WP_018326271.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018326272.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989420.1
DUF3991 and toprim domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008535171.1
COORDINATES: similar to AA sequence:RefSeq:WP_020810055.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_013761981.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020050408.1
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003523673.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite, after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell, providing resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013761984.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018859051.1
GO:0030612 - arsenate reductase (thioredoxin) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF040501.1
arsenic resistance N-acetyltransferase ArsN2
COORDINATES: similar to AA sequence:RefSeq:WP_003501168.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341926.1
COORDINATES: similar to AA sequence:RefSeq:WP_018326274.1
COORDINATES: similar to AA sequence:RefSeq:WP_002211654.1
COORDINATES: similar to AA sequence:RefSeq:WP_007701406.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007701409.1
GO:0016853 - isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010400104.1
COORDINATES: similar to AA sequence:RefSeq:WP_007701421.1
GO:0050114 - myo-inosose-2 dehydratase activity [Evidence IEA]
GO:0019310 - inositol catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007701426.1
GO:0016823 - hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)
COORDINATES: similar to AA sequence:RefSeq:WP_007701428.1
GO:0050112 - inositol 2-dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007701431.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_007398363.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017998843.1
COORDINATES: similar to AA sequence:RefSeq:WP_010400094.1
COORDINATES: similar to AA sequence:RefSeq:WP_013066939.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0009374 - biotin binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004736 - pyruvate carboxylase activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0006090 - pyruvate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012385753.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018304443.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010400113.1
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010400114.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003530542.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019567110.1
COORDINATES: similar to AA sequence:RefSeq:WP_020812846.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245377.1
COORDINATES: similar to AA sequence:RefSeq:WP_000251103.1
GO:0003953 - NAD+ nucleosidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
toll/interleukin-1 receptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013761204.1
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018068208.1
TM0106 family RecB-like putative nuclease
COORDINATES: protein motif:HMM:NF019348.2
COORDINATES: similar to AA sequence:RefSeq:WP_013761208.1
COORDINATES: similar to AA sequence:RefSeq:WP_009050665.1
COORDINATES: similar to AA sequence:RefSeq:WP_015888063.1
COORDINATES: similar to AA sequence:RefSeq:WP_011579895.1
COORDINATES: similar to AA sequence:RefSeq:WP_018075905.1
COORDINATES: similar to AA sequence:RefSeq:WP_003163813.1
COORDINATES: protein motif:HMM:NF037100.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003518564.1
COORDINATES: similar to AA sequence:RefSeq:WP_018855502.1
COORDINATES: similar to AA sequence:RefSeq:WP_007537192.1
COORDINATES: similar to AA sequence:RefSeq:WP_012650505.1
COORDINATES: similar to AA sequence:RefSeq:WP_018067754.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018325682.1
COORDINATES: similar to AA sequence:RefSeq:WP_017270337.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_011727564.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012706124.1
COORDINATES: similar to AA sequence:RefSeq:WP_019566848.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427859.1
COORDINATES: similar to AA sequence:RefSeq:WP_012655018.1
COORDINATES: similar to AA sequence:RefSeq:WP_017265752.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330295.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240670.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003501704.1
COORDINATES: similar to AA sequence:RefSeq:WP_018010281.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984785.1
COORDINATES: similar to AA sequence:RefSeq:WP_018899386.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341955.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbJ
COORDINATES: similar to AA sequence:RefSeq:WP_018326240.1
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_018482029.1
COORDINATES: similar to AA sequence:RefSeq:WP_018899390.1
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_012477350.1
COORDINATES: similar to AA sequence:RefSeq:WP_018899392.1
IncP-type conjugal transfer protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_007199054.1
COORDINATES: similar to AA sequence:RefSeq:WP_008139145.1
class II aldolase and adducin N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011594709.1
4-hydroxyphenylacetate 3-hydroxylase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_085938460.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF012790.2
GO:0016783 - sulfurtransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015495561.1
COORDINATES: similar to AA sequence:RefSeq:WP_015495560.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015495559.1
COORDINATES: similar to AA sequence:RefSeq:WP_015495558.1
COORDINATES: similar to AA sequence:RefSeq:WP_015495556.1
COORDINATES: similar to AA sequence:RefSeq:WP_004392539.1
COORDINATES: protein motif:HMM:NF015729.2
COORDINATES: protein motif:HMM:NF016088.2
COORDINATES: similar to AA sequence:RefSeq:WP_012975535.1
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008123197.1
GO:0015837 - amine transport [Evidence IEA]
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003504159.1
amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009489281.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016555832.1
COORDINATES: similar to AA sequence:RefSeq:WP_004615617.1
COORDINATES: similar to AA sequence:RefSeq:WP_009490152.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011751231.1
COORDINATES: similar to AA sequence:RefSeq:WP_018640794.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009490158.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976773.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013529535.1
COORDINATES: protein motif:HMM:NF017262.2
GO:0042597 - periplasmic space [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004615616.1
COORDINATES: similar to AA sequence:RefSeq:WP_009490134.1
COORDINATES: similar to AA sequence:RefSeq:WP_009713488.1
COORDINATES: similar to AA sequence:RefSeq:WP_015749451.1
COORDINATES: similar to AA sequence:RefSeq:WP_012975558.1
COORDINATES: similar to AA sequence:RefSeq:WP_012975557.1
COORDINATES: similar to AA sequence:RefSeq:WP_007375063.1
COORDINATES: similar to AA sequence:RefSeq:WP_016496069.1
COORDINATES: similar to AA sequence:RefSeq:WP_007375064.1
COORDINATES: protein motif:HMM:NF015366.2
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012293098.1
tripartite tricarboxylate transporter permease
COORDINATES: protein motif:HMM:NF018979.2
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004680536.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_076611806.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009109859.1
COORDINATES: similar to AA sequence:RefSeq:WP_009109861.1
COORDINATES: similar to AA sequence:RefSeq:WP_009109863.1
COORDINATES: similar to AA sequence:RefSeq:WP_006727799.1
COORDINATES: similar to AA sequence:RefSeq:WP_007606988.1
COORDINATES: similar to AA sequence:RefSeq:WP_006727797.1
COORDINATES: similar to AA sequence:RefSeq:WP_006727796.1
COORDINATES: similar to AA sequence:RefSeq:WP_006727795.1
COORDINATES: similar to AA sequence:RefSeq:WP_006699178.1
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_006699177.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_014989239.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996105.1
His-Xaa-Ser system radical SAM maturase HxsC
COORDINATES: similar to AA sequence:RefSeq:WP_007691140.1
His-Xaa-Ser system radical SAM maturase HxsB
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016552871.1
COORDINATES: similar to AA sequence:RefSeq:WP_008532503.1
COORDINATES: protein motif:HMM:NF024098.2
COORDINATES: similar to AA sequence:RefSeq:WP_010974313.1
GO:0045027 - DNA end binding [Evidence IEA]
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014531966.1
COORDINATES: similar to AA sequence:RefSeq:WP_007758852.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003910 - DNA ligase (ATP) activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007758851.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974317.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974318.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974319.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501642.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501640.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014989546.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989547.1
COORDINATES: similar to AA sequence:RefSeq:WP_003526923.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003501635.1
COORDINATES: similar to AA sequence:RefSeq:WP_003526921.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501631.1
GO:0097367 - carbohydrate derivative binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020479288.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014989553.1
sugar phosphate isomerase/epimerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003526913.1
COORDINATES: similar to AA sequence:RefSeq:WP_003535705.1
COORDINATES: similar to AA sequence:RefSeq:WP_003526910.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501610.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501609.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003501604.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501597.1
COORDINATES: similar to AA sequence:RefSeq:WP_003526904.1
COORDINATES: similar to AA sequence:RefSeq:WP_003526903.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_076611337.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611370.1,RefSeq:WP_076611755.1
COORDINATES: similar to AA sequence:RefSeq:WP_015242849.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120130.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DNA polymerase ligase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018896725.1
COORDINATES: similar to AA sequence:RefSeq:WP_007821092.1
COORDINATES: similar to AA sequence:RefSeq:WP_019566740.1
COORDINATES: similar to AA sequence:RefSeq:WP_019566741.1
COORDINATES: similar to AA sequence:RefSeq:WP_018210340.1
3'-5' exonuclease of DNA polymerase III; frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003576622.1
COORDINATES: similar to AA sequence:RefSeq:WP_004126773.1
COORDINATES: similar to AA sequence:RefSeq:WP_003511292.1
COORDINATES: similar to AA sequence:RefSeq:WP_007600322.1
COORDINATES: similar to AA sequence:RefSeq:WP_007600324.1