Shewanella putrefaciens strain 4H plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.
Shewanella Putrefacies 4H,complete genome
Submitted (16-SEP-2022) College of Environmental Engineering, Wuhan Textile University, Sunshine Street No.1, WuHan, Hubei 430200, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP104756.1.\nBacteria and source DNA available from Wuhan Textile University.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: AUG-2022\nAssembly Method :: unicycler v. August-2022\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 249.0x\nSequencing Technology :: Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/27/2022 21:01:26\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,104\nCDSs (total) :: 3,970\nGenes (coding) :: 3,898\nCDSs (with protein) :: 3,898\nGenes (RNA) :: 134\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 105\nncRNAs :: 4\nPseudo Genes (total) :: 73\nCDSs (without protein) :: 72\nPseudo Genes (ambiguous residues) :: 0 of 73\nPseudo Genes (frameshifted) :: 30 of 73\nPseudo Genes (incomplete) :: 48 of 73\nPseudo Genes (internal stop) :: 11 of 73\nPseudo Genes (multiple problems) :: 15 of 73\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_019677805.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011784911.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011784790.1
GO:0005384 - manganese ion transmembrane transporter activity [Evidence IEA]
GO:0030026 - cellular manganese ion homeostasis [Evidence IEA]
COORDINATES: protein motif:HMM:NF012402.2
COORDINATES: similar to AA sequence:RefSeq:WP_012204557.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003056109.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011734096.1
COORDINATES: similar to AA sequence:RefSeq:WP_019677824.1
COORDINATES: similar to AA sequence:RefSeq:WP_012204556.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019677823.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_016236504.1
COORDINATES: similar to AA sequence:RefSeq:WP_001138064.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013221328.1
COORDINATES: similar to AA sequence:RefSeq:WP_008301687.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018574804.1
GO:0045340 - mercury ion binding [Evidence IEA]
mercury resistance system periplasmic binding protein MerP
COORDINATES: similar to AA sequence:RefSeq:WP_008301683.1
mercuric transporter MerT family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018574802.1
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific [Evidence IEA]
Hg(II)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003156773.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229645.1
COORDINATES: similar to AA sequence:RefSeq:WP_001277466.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013722692.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229640.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229639.1
COORDINATES: similar to AA sequence:RefSeq:WP_000414383.1
mercury resistance transcriptional regulator MerR
COORDINATES: similar to AA sequence:RefSeq:WP_014611548.1
COORDINATES: similar to AA sequence:RefSeq:WP_014611547.1
COORDINATES: similar to AA sequence:RefSeq:WP_000007431.1
COORDINATES: similar to AA sequence:RefSeq:WP_011918370.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011918367.1
COORDINATES: similar to AA sequence:RefSeq:WP_011846739.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_011918365.1
COORDINATES: similar to AA sequence:RefSeq:WP_011074346.1
COORDINATES: similar to AA sequence:RefSeq:WP_011074345.1
COORDINATES: similar to AA sequence:RefSeq:WP_011074341.1
COORDINATES: similar to AA sequence:RefSeq:WP_017040200.1
phage integrase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011620836.1
COORDINATES: similar to AA sequence:RefSeq:WP_017411300.1
COORDINATES: similar to AA sequence:RefSeq:WP_001527814.1
COORDINATES: similar to AA sequence:RefSeq:WP_014611557.1
COORDINATES: protein motif:HMM:NF017832.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:NP_416082.1
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_011074398.1
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
type II toxin-antitoxin system HigB family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_014620400.1
COORDINATES: similar to AA sequence:RefSeq:WP_001339197.1
IS4-like element IS10A family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011784783.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]