Ustilago maydis 521 chromosome 1, whole genome shotgun sequence.
Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago.
Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis
Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (02-SEP-2014) Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum Muenchen, German Research Center for Environmental Health (GmbH), Ingolstaedter Landstrasse 1, Neuherberg, Bavaria 85764, Germany
Submitted (23-JUL-2003) Whitehead Institute/MIT Center for Genome Research, 320 Charles Street, Cambridge, MA 02142, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM003140.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2014\nAssembly Method :: Arachne v. May-2005\nAssembly Name :: Umaydis521_2.0\nGenome Coverage :: 10.0x\nSequencing Technology :: Sanger\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
carboxylesterase-mitochondrial 37S ribosomal protein YmS2
related to protein phosphatase methylesterase 1
related to TNA1 - High affinity nicotinic acid plasma membrane permease
related to PGC1 - phosphatidyl glycerol phospholipase C
putative Benzoate 4-monooxygenase cytochrome P450
related to IZH3 - membrane protein involved in zinc ion homeostasis
related to PHS1 - essential 3-hydroxyacyl-CoA dehydratase of the ER membrane
translation machinery-associated protein 20
related to TMA20 - Protein putative involved in cytoplasmic ribosome function
related to ZIM17 - Zinc finger Motif protein, mitochondrial
related to PNS1 - Protein of unknown function
related to NADH-dependent flavin oxidoreductase
related to l-azetidine-2-carboxylic acid acetyltransferase
related to a retinal short-chain dehydrogenase/reductase
related to Proline oxidase, mitochondrial precursor
related to ARO80 - positive transcription regulator of ARO9 and ARO10
putative mfs-multidrug-resistance transporter
succinate dehydrogenase assembly factor SDH5
related to EMI5 - protein required for transcriptional induction of TF IME1
related to 3-mercaptopyruvate sulfurtransferase
related to pepsin precursor (aspartate protease)
related to HMF1 - Heat-shock induceable Inhibitor of cell Growth
related to RKM3 - ribosomal lysine methyltransferase
related to ubiquitin-protein ligase e3 component
related to ICE2 - integral ER membrane protein with type-III transmembrane domains
related to ERD1 protein, required for retention of luminal ER proteins
related to NOP16 nucleolar protein involved in 60S ribosomal subunit biogenesis
related to Molybdopterin biosynthesis CNX2 protein
putative uracil phosphoribosyltransferase
related to NonF protein, involved in nonactin biosynthesis
related to choline-phosphate cytidylyltransferase
related to ESBP6 - similarity to Monocarboxylate transporter
related to membrane protein, peroxisomal
putative non-snRNP spliceosome component required for DNA repair
related to transcriptional activator acu-15
related to SPT3 - general transcriptional adaptor or co-activator
putative branched-chain-amino-acid transaminase
related to nicotinamide mononucleotide permease
related to protein FR, involved in hyphal branching
related to PTC7 - type 2C protein phosphatase
related to L-lactate dehydrogenase (cytochrome b2)
related to Glucan 1,3-beta-glucosidase precursor
related to NADPH quinone oxidoreductase homolog PIG3
putative translation elongation factor Tu
related to SPT5 - transcription elongation protein
related to MRP10 - mitochondrial ribosomal protein of the small subunit
putative protein transport protein sec61 subunit beta
alternatively spliced; related to p53-related protein kinase (isoform B)
related to p53-related protein kinase (isoform A)
putative TOM complex membrane pore subunit
putative multifunctional beta-oxidation protein
related to MMT1 - Mitochondrial iron transport protein
related to tandem ph domain-containing protein-2 (tapp2)
related to SUR4 - elongase, involved in fatty acid and sphingolipid biosynthesis
putative transport vesicle fusion protein
related to Cell division control protein 15
related to AUT1 - essential for autophagocytosis
related to tRNA isopentenylpyrophosphate transferase
bifunctional aminopeptidase/epoxide hydrolase
related to meiotic recombination protein rec8
chromatin-remodeling histone chaperone SPT6
related to transcriptional regulator protein SPT6
related to eIF3f - translation initiation factor 3 subunit F
putative phosphatidylinositol-3-phosphatase
related to UTP7 - nucleolar protein, component of the small subunit processome
related to SWD1 - subunit of the COMPASS complex
related to RPF1 - involved in the assembly of the large ribosomal subunit
related to COX8 - cytochrome-c oxidase chain VIII
related to MNR2 - Manganese resistance protein
related to ESF1 - 18S rRNA factor, nucleolar protein involved in pre-rRNA processing
putative U6 snRNA-associated Sm-like protein LSm5
related to BUD13 - subunit of the RES complex, required for pre-mRNA retention and splicing
putative transmembrane protein involved in ammonia production
related to TAD2 - tRNA-specific adenosine deaminase 2
related to eIF3h -translation initiation factor 3 subunit H
related to mitochondrial carrier family protein
related to SRC1 - involved in sister chromatid segregation
phosphatidylinositol N-acetylglucosaminyltransferase
related to GPI1 - required for N-acetylglucosaminyl phosphatidylinositol synthesis
putative methylmalonate-semialdehyde dehydrogenase (acylating)
putative DNA replication factor C subunit protein
cleavage polyadenylation factor subunit PFS2
related to PFS2 - polyadenylation factor I subunit 2
putative P-type ATPase, Cu(2+)-transporting ATPase
related to FMO1 - flavin-containing monooxygenase
related to Formyltetrahydrofolate deformylase
related to SYF2 - pre-mRNA-splicing factor
putative exo-beta-1,3-glucanase (I/II), major isoform
putative nonsense-mediated mRNA decay protein, ATP-dependent RNA helicase
related to SSK1 - two-component signal transducer
related to MAK5 - ATP-dependent RNA helicase
related to mitochondrial uncoupling protein 3
putative adenylyl-cyclase-associated protein CAP
related to kinetochore associated 2 (HEC)
related to 3-oxoacyl-[acyl-carrier protein] reductase
putative glycine cleavage system H protein
related to carnitine/acylcarnitine translocase
related to ZAP1 - metalloregulatory protein involved in zinc-responsive transcriptional regulation
related to pyruvate dehydrogenase complex protein X precursor, dihydrolipoamide acetyltransferase component
related to Rpa34 - 34 kD subunit of DNA-directed RNA polymerase I
related to JSN1 - RNA-binding protein (pumilio family)
related to Lipase, required for intravacuolar lysis of autophagic bodies
related to NTG2 - DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase involved in base excision repair
nitrogen permease regulating protein NPR2
related to NPR2 - nitrogen permease regulator
related to Glutaminyl-peptide cyclotransferase precursor
related to vesicle-associated membrane protein 7
related to muconate cycloisomerase / hypothetical protein
related to inner kinetochore protein MIF2
related to DNA topoisomerase II binding protein
rRNA-binding ribosome biosynthesis protein RPF2
related to protein RPF2 involved in ribosomal large subunit assembly and maintenance
related to Peroxisome assembly protein 12
related to ubiquitin-specific processing protease
N-acetylglucosaminylphosphatidylinositol deacetylase
related to N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
chromatin-binding/pre-rRNA-processing protein IPI3
putative asparagine synthase (glutamine-hydrolyzing) 2
putative DEAD-box ATP-dependent RNA helicase DBP2
related to MRT4 - protein involved in mRNA turnover
related to LIA1 - deoxyhypusine hydroxylase
cleavage polyadenylation factor subunit MPE1
related to MPE1 - subunit of CPF involved 3' end formation of mRNA
putative lecithin cholesterol acyltransferase-like protein
related to TAO3 - Transcriptional Activator of OCH1
related to magnesium-dependent acid phosphatase
related to ERJ5 - Type I membrane protein preserves the folding capacity of the endoplasmic reticulum
related to exocyst complex 100 kDa component
related to PSF3 - subunit of the GINS complex
transcription factor TFIIIC subunit TFC4
related to transcription factor TFIIIC subunit
putative peroxisomal acyl-coenzyme A thioester hydrolase 1
putative E2 ubiquitin-conjugating protein UBC7
dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichol alpha-1,6-mannosyltransferase
related to ALG12 - alpha-1,6-mannosyltransferase
glycosylphosphatidylinositol-alpha 1,4 mannosyltransferase I
related to GPI14 - Glycosylphosphatidylinositol-alpha 1,4 mannosyltransferase I
related to PUN1 - plasma membrane protein with a role in cell wall integrity
related to acetyl coenzyme A synthetase / hypothetical protein
related to U4/U6 snRNP-associated 61 kDa protein
putative succinate--CoA ligase (GDP-forming) subunit beta
putative ubiquitin-conjugating enzyme E2
related to DAD4 - outer kinetochore protein (part of Dam1 complex)
putative allantoate and ureidosuccinate permease
related to eIF3e - eukaryotic initiation factor 3 subunit E
related to MAG1 - 3-methyl-adenine DNA glycosylase
putative NADH2 dehydrogenase (ubiquinone) 40K chain
related to Ferric reductase transmembrane component 1 precursor
related to THG1 - protein required for tRNA-His guanylylation at 5 prime end
protein serine/threonine kinase activating protein DBF4
putative RNA helicase, involved in exosome mediated 3` to 5` mRNA degradation
putative mitochondrial 54S ribosomal protein
putative glycerol 2-dehydrogenase (NADP(+))
putative mitogen-activated serine/threonine-protein kinase SLT2
related to CAP1 - F-actin capping protein alpha subunit
putative alpha,alpha-trehalose-phosphate synthase (UDP-forming)
putative glycine decarboxylase subunit T
mitochondrial 54S ribosomal protein YmL6
related to phosphatidylinositol 3-kinase
mannose-ethanolamine phosphotransferase MCD4
related to MIR1 - Phosphate transporter of the mitochondrial carrier (MCF) family
related to SKI3 - protein involved in exosome mediated 3` to 5` mRNA degradation
bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase MET8
phosphoribosylglycinamide formyltransferase
related to glycinamide ribonucleotide transformylase
related to 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
related to Monocarboxylate transporter 1
transmembrane mucin involved in surface sensing via MAP-kinase cascade
putative signal peptidase (endopeptidase SP18)
tRNA splicing endonuclease subunit SEN34
related to RNA splicing endonuclease gamma subunit
transcription factor TFIIIB subunit BRF1
mismatch base pair and cruciform DNA recognition protein Hmp1
related to CSR1 - phosphatidylinositol transfer protein
related to Inhibitor-sensitive equilibrative nucleoside transporter 1
related to BRO1 - cytoplasmic class E vacuolar protein sorting (VPS) factor
related to MED6 - subunit of the RNA polymerase II mediator complex
putative H(+)-transporting V0 sector ATPase subunit c
putative intra-mitochondrial sorting protein
putative proteasome core particle subunit beta 3
related to TAF13 - TFIID subunit involved in RNA polymerase II transcription initiation
related to TRP4 - anthranilate phosphoribosyltransferase
putative electron transfer flavoprotein beta chain
putative phosphatidylinositol-4-OH kinase regulator
putative E2 ubiquitin-conjugating protein UBC1
related to DNA polymerase delta subunit 4
putative carboxylic acid transport protein JEN1
related to PPR1 - transcription factor regulating pyrimidine pathway
related to UGO1 - outer membrane component of the mitochondrial fusion machinery
related to MON2 - peripheral membrane protein with a role in endocytosis and vacuole integrity
related to HRD1 - ubiquitin-protein ligase
related to MIC17 - mitochondrial intermembrane space protein, required for normal oxygen consumption
putative proteasome regulatory particle base subunit RPT3
putative delta 1-pyrroline-5-carboxylate reductase
related to GDA1 - guanosine diphosphatase
related to UTR1 (associated with ferric reductase activity)
related to putative C2H2 zinc finger protein flbC
related to GTPase activating protein sec2
putative glycerol-3-phosphate dehydrogenase (NAD)
related to GDP/GTP exchange factor for Gsp1p/Gsp2p
putative glycogen synthase kinase 3 alpha
related to cell cycle arrest protein BUB2
mitochondrial 54S ribosomal protein YmL33
related to MRPL33 - mitochondrial ribosomal protein, large subunit
putative chaperonin containing TCP-1 complex subunit CCT7
putative phosphatidylinositol 3-phosphate 5-kinase
related to FCP1 - TFIIF interacting component of CTD phosphatase
related to MEU1 - multiple enhancer of UAS2
related to RAD16 - nucleotide excision repair protein
putative DNA/RNA helicase (DEAD/H box family II)
related to IES1 - Subunit 1 of the INO80 chromatin remodeling complex
related to LRP1 - nuclear exosome-associated nucleic acid binding protein
peptide alpha-N-acetyltransferase complex A subunit NAT1
related to n-terminal acetyltransferase 1
related to cytoskeleton assembly control protein
putative 26S proteasome regulatory subunit
related to GLO4 - glyoxalase II (hydroxyacylglutathione hydrolase)
related to Nuclear receptor co-repressor/HDAC3 complex subunit TBLR1
putative dihydrolipoamide acetyltransferase
putative ATP-binding cassette Fe/S cluster precursor transporter
putative syntaxin, vesicular transport protein
related to Splicing factor U2AF-associated protein 2
putative serine/threonine protein kinase
related to SGT1 - subunit of SCF ubiquitin ligase complex
dolichyl-P-Glc:Glc1Man(9)GlcNAc(2)-PP-dolichol alpha-1,3-glucosyltransferase
related to PUF3 - transcript-specific regulator of mRNA degradation
related to phosducin homolog, likely to be involved in regulation of pheromone response
related to RKR1 - RING domain E3 ubiquitin ligase
related to BYE1 - negative regulator of transcription elongation
putative protein channel TOM complex structural subunit
related to O-sialoglycoprotein endopeptidase
DNA-(apurinic or apyrimidinic site) lyase APN2
related to APN2 - AP endonuclease, exonuclease III homolog
putative H+-ATPase V1 domain catalytic subunit
putative proteasome regulatory particle base subunit RPT1
CDP-diacylglycerol--inositol 3-phosphatidyltransferase
related to CDP diacylglycerol-inositol 3-phosphatidyltransferase
related to FCJ1 - mitochondrial inner membrane protein involved in formation of crista junctions
related to CDA2 - sporulation-specific chitin deacetylase
related to nuclear pore complex protein Nup160
Hgl1p, required for dimorphism and teliospore formation
related to COP9 signalosome complex subunit 6
putative E2 ubiquitin-conjugating enzyme
related to Progesterone 5-beta-reductase
related to CDC23 - cell division control protein
related to YSC84 - protein involved in the organization of the actin cytoskeleton
related to RAD7 - nucleotide excision repair protein
putative NEDD4 family E3 ubiquitin-protein ligase
related to MZM1 protein required for assembly of the cytochrome bc1 complex
related to NADH:ubiquinone oxidoreductase 14 kda
related to Pre-mRNA-splicing factor RBM22
related to SIP2 - subunit of the Snf1 serine/threonine protein kinase complex
related to TFB3 - TFIIH subunit (transcription/repair factor)
putative fructose-bisphosphate aldolase FBA1
related to TRM44 - tRNA(Ser) Um(44) 2'-O-methyltransferase
related to TOM5 - mitochondrial outer membrane protein
related to RRP5 - processing of pre-ribosomal RNA
related to VBA1 - Vacuolar Basic Amino acid transporter
related to anaphase promoting complex subunit 10
related to TIM13 - Translocase of the inner membrane
related to TAZ1 - Lyso-phosphatidylcholine acyltransferase
related to CYC2 - cytochrome-c mitochondrial import factor
related to bacterial leucyl aminopeptidase precursor
related to LTV1 - low-temperature viability protein
related to CSL4 - exosome core component
related to HRK1 - Protein kinase with a role in ion homeostasis
mRNA-binding ribosome synthesis protein NOP7
related to NOP7 - component of several different pre-ribosomal particles
related to SAD1 - protein required for assembly of U4 snRNA into the U4/U6 particle
related to protein DGCR14, probably involved in pre-mRNA splicing
related to Exocyst complex component Sec5
related to Proteasome activator complex subunit 3
putative nuclear protein localization factor and ER translocation component
related to NOP6 - protein with possible role in rRNA processing
putative NADH2 dehydrogenase (ubiquinone) flavoprotein 1
related to stress response protein rds1p
related to UTP11 - subunit of U3-containing small subunit processome complex
putative cytochrome-c oxidase assembly protein
related to Origin recognition complex subunit 4
related to KEL1 - involved in cell fusion and morphology
related to 2-dehydropantoate 2-reductase
related to TAF1 - TFIID subunit (TBP-associated factor), 145 kD
rRNA-binding ribosome biosynthesis protein UTP25
related to UTP25 - nucleolar protein required for 35S pre-RNA processing and 40S ribosomal subunit biogenesis
putative 60S ribosomal biogenesis GTPase subunit
related to IMG2 - mitochondrial ribosomal protein of the large subunit
related to SSS1 - ER protein-translocase complex subunit
related to INO80 - ATPase with chromatin remodeling and helicase activity
related to ERG8 - phosphomevalonate kinase
related to CDC28 - cyclin-dependent protein kinase
related to MMS21 - SUMO ligase and component of the SMC5-SMC6 complex
related to RAV1 - Regulator of (H+)-ATPase in vacuolar membrane
mitochondrial 54S ribosomal protein YmL8
related to mitochondrial ribosomal protein YmL8
mitochondrial 37S ribosomal protein RSM22
putative alanine/arginine aminopeptidase
related to SKN1 - protein involved in sphingolipid biosynthesis
related to KOG1 - Subunit of TORC1, a rapamycin-sensitive complex involved in growth control
related to RRB1 - involved in the regulation of ribosome biosynthesis
related to ATX2 - Golgi membrane protein involved in manganese homeostasis
related to small nuclear ribonucleoprotein snRNP U1A
related to BDP1 - essential subunit of RNA polymerase III transcription factor
mitochondrial 54S ribosomal protein MRPL1
putative bifunctional purine biosynthetic protein ade1
putative thiamine biosynthesis protein nmt1
putative COP9 signalosome complex, subunit 2
related to bacterial glycerol-3-phosphate acyltransferases
related to KAP114 - Member of the karyopherin-beta family, nuclear import