Hymenobacter oligotrophus strain sh-6 plasmid unnamed1, complete sequence.
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter.
Hymenobacter medium sp. nov., isolated from R2A medium
Submitted (11-SEP-2018) Wuhan Uiversity, College of Life Science, Guangba Road, Wuhan 430000, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP032318.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0 AUGAUST-2018\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 187.42x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/06/2022 01:01:25\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,657\nCDSs (total) :: 3,596\nGenes (coding) :: 3,575\nCDSs (with protein) :: 3,575\nGenes (RNA) :: 61\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 21\nCDSs (without protein) :: 21\nPseudo Genes (ambiguous residues) :: 0 of 21\nPseudo Genes (frameshifted) :: 5 of 21\nPseudo Genes (incomplete) :: 16 of 21\nPseudo Genes (internal stop) :: 1 of 21\nPseudo Genes (multiple problems) :: 1 of 21\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type material of Hymenobacter oligotrophus
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014681690.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
YeeE/YedE thiosulfate transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009779119.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019948667.1
COORDINATES: similar to AA sequence:RefSeq:WP_019948668.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015027247.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: protein motif:HMM:NF014385.2
COORDINATES: similar to AA sequence:RefSeq:WP_020604907.1
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019946792.1
COORDINATES: similar to AA sequence:RefSeq:WP_008249967.1
COORDINATES: similar to AA sequence:RefSeq:WP_005796426.1
COORDINATES: similar to AA sequence:RefSeq:WP_019946788.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019949149.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: protein motif:HMM:NF024946.2
COORDINATES: protein motif:HMM:NF037521.2
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019949660.1
COORDINATES: similar to AA sequence:RefSeq:WP_004069457.1
COORDINATES: protein motif:HMM:NF037437.2
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: protein motif:HMM:NF025386.2
COORDINATES: protein motif:HMM:NF024491.2
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013406981.1
GO:0004527 - exonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012929343.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF033527.1
GO:0004803 - transposase activity [Evidence IEA]