Tolypothrix tenuis PCC 7101 plasmid plasmid5 DNA, complete genome.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Tolypothrichaceae; Tolypothrix.
Genome sequencing of cyanobaciteial culture collection at National Institute for Environmental Studies (NIES)
Submitted (23-JUN-2017) Contact:Yuu Hirose Toyohashi University of Technology, Department of Environmental and Life Sciences; Hibarigaoka-1-1 Tenpakucho, Toyohashi, Aichi 441-8122, Japan
REFSEQ INFORMATION: The reference sequence was derived from\nAP018253.\nNBRP Genome Information Upgrading Program.: Genome sequencing of\ncyanobaciteial culture collection at National Institute for\nEnvironmental Studies (NIES).\n\nAnnotated using prokka 1.11 from http://www.vicbioinformatics.com.\nAnnotated at D-FAST https://dfast.nig.ac.jp\n\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: GS De Novo Assembler v. 2.9\nGenome Coverage :: 55x\nSequencing Technology :: Ilumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 09/28/2017 13:20:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS+\nAnnotation Software revision :: 4.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 7,460\nCDS (total) :: 7,369\nGenes (coding) :: 7,118\nCDS (coding) :: 7,118\nGenes (RNA) :: 91\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 72\nncRNAs :: 4\nPseudo Genes (total) :: 251\nPseudo Genes (ambiguous residues) :: 7 of 251\nPseudo Genes (frameshifted) :: 42 of 251\nPseudo Genes (incomplete) :: 186 of 251\nPseudo Genes (internal stop) :: 48 of 251\nPseudo Genes (multiple problems) :: 30 of 251\nCRISPR Arrays :: 18\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS+
Derived by automated computational analysis using gene prediction method: GeneMarkS+.
COORDINATES: similar to AA sequence:RefSeq:WP_016876068.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016876069.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876070.1
COORDINATES: protein motif:HMM:PF13476.4,HMM:PF13558.4
COORDINATES: protein motif:HMM:TIGR00619
COORDINATES: similar to AA sequence:RefSeq:WP_019493328.1
COORDINATES: similar to AA sequence:RefSeq:WP_016879858.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876037.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876038.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_016879859.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186198.1
COORDINATES: similar to AA sequence:RefSeq:WP_016879861.1
COORDINATES: similar to AA sequence:RefSeq:WP_016879862.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876043.1
COORDINATES: similar to AA sequence:RefSeq:WP_016879863.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016879864.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876049.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876050.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876052.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876053.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016876054.1
COORDINATES: similar to AA sequence:RefSeq:WP_016879868.1
COORDINATES: similar to AA sequence:RefSeq:WP_016879869.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016876058.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876059.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016879871.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876061.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876062.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876063.1
COORDINATES: similar to AA sequence:RefSeq:WP_016879872.1