Tolypothrix tenuis PCC 7101 plasmid plasmid4 DNA, complete genome.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Tolypothrichaceae; Tolypothrix.
Genome sequencing of cyanobaciteial culture collection at National Institute for Environmental Studies (NIES)
Submitted (23-JUN-2017) Contact:Yuu Hirose Toyohashi University of Technology, Department of Environmental and Life Sciences; Hibarigaoka-1-1 Tenpakucho, Toyohashi, Aichi 441-8122, Japan
REFSEQ INFORMATION: The reference sequence was derived from\nAP018252.\nNBRP Genome Information Upgrading Program.: Genome sequencing of\ncyanobaciteial culture collection at National Institute for\nEnvironmental Studies (NIES).\n\nAnnotated using prokka 1.11 from http://www.vicbioinformatics.com.\nAnnotated at D-FAST https://dfast.nig.ac.jp\n\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: GS De Novo Assembler v. 2.9\nGenome Coverage :: 55x\nSequencing Technology :: Ilumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 09/28/2017 13:20:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS+\nAnnotation Software revision :: 4.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 7,460\nCDS (total) :: 7,369\nGenes (coding) :: 7,118\nCDS (coding) :: 7,118\nGenes (RNA) :: 91\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 72\nncRNAs :: 4\nPseudo Genes (total) :: 251\nPseudo Genes (ambiguous residues) :: 7 of 251\nPseudo Genes (frameshifted) :: 42 of 251\nPseudo Genes (incomplete) :: 186 of 251\nPseudo Genes (internal stop) :: 48 of 251\nPseudo Genes (multiple problems) :: 30 of 251\nCRISPR Arrays :: 18\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:PF00487.22
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS+
Derived by automated computational analysis using gene prediction method: GeneMarkS+.
COORDINATES: similar to AA sequence:RefSeq:WP_015161274.1
COORDINATES: similar to AA sequence:RefSeq:WP_017308351.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876725.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876724.1
COORDINATES: similar to AA sequence:RefSeq:WP_015196839.1
COORDINATES: similar to AA sequence:RefSeq:WP_017308356.1
COORDINATES: similar to AA sequence:RefSeq:WP_017308358.1
ssl1498 family light-harvesting-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_019495070.1
COORDINATES: similar to AA sequence:RefSeq:WP_016872797.1
incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016876718.1
COORDINATES: protein motif:HMM:PF01656.21
COORDINATES: similar to AA sequence:RefSeq:WP_017655420.1
COORDINATES: similar to AA sequence:RefSeq:WP_006670689.1
COORDINATES: similar to AA sequence:RefSeq:WP_019506723.1
COORDINATES: similar to AA sequence:RefSeq:WP_015201219.1
COORDINATES: similar to AA sequence:RefSeq:WP_017749267.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006195159.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010994166.1
COORDINATES: similar to AA sequence:RefSeq:WP_007905614.1
COORDINATES: similar to AA sequence:RefSeq:WP_011318391.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_013190900.1
COORDINATES: protein motif:HMM:PF09556.8
COORDINATES: similar to AA sequence:RefSeq:WP_017655405.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655404.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655402.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655401.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412870.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994109.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994150.1
COORDINATES: similar to AA sequence:RefSeq:WP_015183121.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412855.1
COORDINATES: similar to AA sequence:RefSeq:WP_015130608.1